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Commit 19bce219 authored by Tim O'Donnell's avatar Tim O'Donnell
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Unzip uniref30_2103.tar.gz after download 

Also fix a typo in the README
parent 5e2c3058
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README.md
View file @ 19bce219
...@@ -141,8 +141,8 @@ python3 run_pretrained_openfold.py \ ...@@ -141,8 +141,8 @@ python3 run_pretrained_openfold.py \
--jackhmmer_binary_path lib/conda/envs/openfold_venv/bin/jackhmmer \ --jackhmmer_binary_path lib/conda/envs/openfold_venv/bin/jackhmmer \
--hhblits_binary_path lib/conda/envs/openfold_venv/bin/hhblits \ --hhblits_binary_path lib/conda/envs/openfold_venv/bin/hhblits \
--hhsearch_binary_path lib/conda/envs/openfold_venv/bin/hhsearch \ --hhsearch_binary_path lib/conda/envs/openfold_venv/bin/hhsearch \
--kalign_binary_path lib/conda/envs/openfold_venv/bin/kalign --kalign_binary_path lib/conda/envs/openfold_venv/bin/kalign \
--config_preset "model_1_ptm" --config_preset "model_1_ptm" \
--openfold_checkpoint_path openfold/resources/openfold_params/finetuning_ptm_2.pt --openfold_checkpoint_path openfold/resources/openfold_params/finetuning_ptm_2.pt
``` ```
......
scripts/download_uniref30.sh
View file @ 19bce219
...@@ -36,3 +36,4 @@ BASENAME=$(basename "${SOURCE_URL}") ...@@ -36,3 +36,4 @@ BASENAME=$(basename "${SOURCE_URL}")
mkdir --parents "${ROOT_DIR}" mkdir --parents "${ROOT_DIR}"
aria2c "${SOURCE_URL}" --dir="${ROOT_DIR}" -x 4 --check-certificate=false aria2c "${SOURCE_URL}" --dir="${ROOT_DIR}" -x 4 --check-certificate=false
gunzip "${ROOT_DIR}/${BASENAME}"
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