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OpenDAS
OpenFold
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0e9aaa63
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0e9aaa63
authored
Dec 20, 2021
by
Gustaf Ahdritz
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GitHub
Dec 20, 2021
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Update name of ProteinNet script in README
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0e9aaa63
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@@ -86,7 +86,7 @@ MMseqs2 should be split according to the memory available on the system).
...
@@ -86,7 +86,7 @@ MMseqs2 should be split according to the memory available on the system).
Alternatively, you can use raw MSAs from
Alternatively, you can use raw MSAs from
[
ProteinNet
](
https://github.com/aqlaboratory/proteinnet
)
. After downloading
[
ProteinNet
](
https://github.com/aqlaboratory/proteinnet
)
. After downloading
the database, use
`scripts/prep
are
_proteinnet_msas.py`
to convert the data into
the database, use
`scripts/prep_proteinnet_msas.py`
to convert the data into
a format recognized by the OpenFold parser. The resulting directory becomes the
a format recognized by the OpenFold parser. The resulting directory becomes the
`alignment_dir`
used in subsequent steps. Use
`scripts/unpack_proteinnet.py`
to
`alignment_dir`
used in subsequent steps. Use
`scripts/unpack_proteinnet.py`
to
extract
`.core`
files from ProteinNet text files.
extract
`.core`
files from ProteinNet text files.
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