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Commit 0cf8b928 authored by Jennifer's avatar Jennifer
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remove nested definition of local_alignmnet_dir in run_pretrained_openfold.py

parent 26d555d5
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Showing with 1 addition and 4 deletions
run_pretrained_openfold.py
View file @ 0cf8b928
...@@ -63,10 +63,7 @@ def precompute_alignments(tags, seqs, alignment_dir, args): ...@@ -63,10 +63,7 @@ def precompute_alignments(tags, seqs, alignment_dir, args):
with open(tmp_fasta_path, "w") as fp: with open(tmp_fasta_path, "w") as fp:
fp.write(f">{tag}\n{seq}") fp.write(f">{tag}\n{seq}")
local_alignment_dir = os.path.join( local_alignment_dir = os.path.join(alignment_dir, tag),
alignment_dir,
os.path.join(alignment_dir, tag),
)
if args.use_precomputed_alignments is None: if args.use_precomputed_alignments is None:
logger.info(f"Generating alignments for {tag}...") logger.info(f"Generating alignments for {tag}...")
......
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