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Dingquan Yu's avatar
added test alignment files for dataloader unittest  
Dingquan Yu committed
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# STOCKHOLM 1.0

#=GS MGYP000467963421/26-116  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000846229465/30-113  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000846229465/117-203 DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP001107424229/29-115  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP001155424688/26-110  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000271262092/21-101  DE [subseq from] PL=01 UP=0 BIOMES=0000000000001
#=GS MGYP000271262092/119-204 DE [subseq from] PL=01 UP=0 BIOMES=0000000000001
#=GS MGYP000271262092/153-232 DE [subseq from] PL=01 UP=0 BIOMES=0000000000001
#=GS MGYP000271262092/397-484 DE [subseq from] PL=01 UP=0 BIOMES=0000000000001
#=GS MGYP000403888639/59-146  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000403888639/147-232 DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP001071433531/28-111  DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP001071433531/110-191 DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP000364879671/27-111  DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP000364879671/110-191 DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP001155937486/27-110  DE [subseq from] PL=10 UP=0 BIOMES=0110000000000
#=GS MGYP001155937486/107-190 DE [subseq from] PL=10 UP=0 BIOMES=0110000000000
#=GS MGYP001034379205/29-115  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP001034379205/119-205 DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000709415397/123-201 DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
#=GS MGYP000709415397/203-292 DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
#=GS MGYP000709415397/286-350 DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
#=GS MGYP000364172476/28-110  DE [subseq from] PL=00 UP=0 BIOMES=0000101000000
#=GS MGYP000252758770/27-110  DE [subseq from] PL=00 UP=0 BIOMES=0000110000000
#=GS MGYP000642723508/1-56    DE [subseq from] PL=01 UP=0 BIOMES=0110000000000
#=GS MGYP000642723508/56-137  DE [subseq from] PL=01 UP=0 BIOMES=0110000000000
#=GS MGYP000258252309/73-152  DE [subseq from] PL=10 UP=0 BIOMES=0000000000001
#=GS MGYP000258252309/116-203 DE [subseq from] PL=10 UP=0 BIOMES=0000000000001
#=GS MGYP000607404454/33-111  DE [subseq from] PL=01 UP=0 BIOMES=0100000000000
#=GS MGYP000204898342/28-110  DE [subseq from] PL=00 UP=0 BIOMES=0000101000000
#=GS MGYP000920188452/23-109  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000178393279/28-111  DE [subseq from] PL=00 UP=0 BIOMES=0000101000000
#=GS MGYP000903457189/33-114  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000040529999/23-110  DE [subseq from] PL=00 UP=0 BIOMES=0000000000001
#=GS MGYP000400076375/33-112  DE [subseq from] PL=00 UP=0 BIOMES=0000000000001
#=GS MGYP000606502806/33-112  DE [subseq from] PL=00 UP=1 BIOMES=0000000000001
#=GS MGYP001004435883/33-112  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000055469423/28-110  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000847493743/29-115  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000512368666/27-110  DE [subseq from] PL=00 UP=0 BIOMES=0000100000000
#=GS MGYP000948663314/33-114  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000585971504/29-108  DE [subseq from] PL=00 UP=0 BIOMES=0000110000000
#=GS MGYP000323568230/11-95   DE [subseq from] PL=10 UP=0 BIOMES=1000000000000
#=GS MGYP000434846991/33-112  DE [subseq from] PL=00 UP=0 BIOMES=0101000000000
#=GS MGYP000941407356/29-114  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000947196375/31-115  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000936469750/29-114  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP001009819930/16-95   DE [subseq from] PL=01 UP=0 BIOMES=1000000000000
#=GS MGYP000662913970/25-110  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000402675091/45-126  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000077997304/34-112  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000228641014/24-114  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000350835469/24-114  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000058088706/25-111  DE [subseq from] PL=00 UP=1 BIOMES=0100000000000
#=GS MGYP000146590677/29-108  DE [subseq from] PL=00 UP=0 BIOMES=0000110000000
#=GS MGYP001096584969/27-114  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000969140220/28-110  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP001046971808/28-108  DE [subseq from] PL=00 UP=0 BIOMES=0000000100000
#=GS MGYP000689945017/39-121  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000146673433/31-115  DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP000910518516/29-114  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000294811739/33-115  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000483510958/37-119  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000256473796/24-114  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP001015740169/28-110  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000002866459/24-114  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000369925484/26-114  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000982323480/24-109  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000595575101/38-119  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000155044035/12-87   DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
#=GS MGYP000155044035/54-139  DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
#=GS MGYP000155044035/103-180 DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
#=GS MGYP000155044035/133-216 DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
#=GS MGYP000155044035/180-263 DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
#=GS MGYP000367249296/26-112  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000715397913/2-82    DE [subseq from] PL=00 UP=0 BIOMES=0101000000000
#=GS MGYP000902000951/26-114  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000238766420/33-115  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000409824016/33-112  DE [subseq from] PL=00 UP=1 BIOMES=0100000000000
#=GS MGYP000872390244/37-125  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000588238668/28-109  DE [subseq from] PL=00 UP=0 BIOMES=0000101000000
#=GS MGYP000656726134/29-112  DE [subseq from] PL=00 UP=0 BIOMES=0000110000000
#=GS MGYP000219533571/33-112  DE [subseq from] PL=00 UP=1 BIOMES=1000000000000
#=GS MGYP000355290453/28-110  DE [subseq from] PL=00 UP=0 BIOMES=0000101000000
#=GS MGYP000090644659/34-119  DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP000547146828/34-106  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP001118768847/70-152  DE [subseq from] PL=11 UP=0 BIOMES=0110000000000
#=GS MGYP001118768847/153-191 DE [subseq from] PL=11 UP=0 BIOMES=0110000000000
#=GS MGYP000887919497/51-130  DE [subseq from] PL=10 UP=0 BIOMES=1000000000000
#=GS MGYP000013133381/24-110  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000939328393/26-114  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000732874342/26-114  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000718018172/28-110  DE [subseq from] PL=00 UP=0 BIOMES=0000101000000
#=GS MGYP000877329710/28-113  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000462152266/26-114  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000148812711/20-100  DE [subseq from] PL=10 UP=0 BIOMES=0000100000000
#=GS MGYP000327157371/35-113  DE [subseq from] PL=00 UP=0 BIOMES=0101000000000
#=GS MGYP000414937149/1-79    DE [subseq from] PL=01 UP=0 BIOMES=0000110000000
#=GS MGYP000308144150/28-109  DE [subseq from] PL=00 UP=0 BIOMES=0000101000000
#=GS MGYP000877041607/33-105  DE [subseq from] PL=01 UP=0 BIOMES=0100000000000
#=GS MGYP000263863652/34-64   DE [subseq from] PL=00 UP=0 BIOMES=0000100000000
#=GS MGYP000263863652/77-133  DE [subseq from] PL=00 UP=0 BIOMES=0000100000000
#=GS MGYP001047305269/26-110  DE [subseq from] PL=00 UP=1 BIOMES=1000000000000
#=GS MGYP000875217305/28-111  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000866699268/25-107  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000912643273/45-123  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000064397883/8-84    DE [subseq from] PL=01 UP=0 BIOMES=0101000000000
#=GS MGYP000980429050/1-73    DE [subseq from] PL=10 UP=0 BIOMES=1000000000000
#=GS MGYP000105368240/26-111  DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP000585233310/33-110  DE [subseq from] PL=00 UP=0 BIOMES=0101000000000
#=GS MGYP000876628043/27-109  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000996667989/199-280 DE [subseq from] PL=01 UP=0 BIOMES=1000000000000
#=GS MGYP000101642102/33-110  DE [subseq from] PL=00 UP=0 BIOMES=0101000000000
#=GS MGYP000884351566/1-81    DE [subseq from] PL=10 UP=0 BIOMES=1000000000000
#=GS MGYP000447423718/2-83    DE [subseq from] PL=10 UP=0 BIOMES=0110000000000
#=GS MGYP000991458153/23-109  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000016163756/24-113  DE [subseq from] PL=00 UP=0 BIOMES=0000100000000
#=GS MGYP000636171645/39-131  DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP000269814125/2-76    DE [subseq from] PL=00 UP=0 BIOMES=0000101000000
#=GS MGYP000145852144/35-117  DE [subseq from] PL=00 UP=0 BIOMES=0000100000000
#=GS MGYP001104993920/27-111  DE [subseq from] PL=10 UP=0 BIOMES=0110000000000
#=GS MGYP000621342879/28-113  DE [subseq from] PL=00 UP=0 BIOMES=0000110000000
#=GS MGYP000467608754/75-159  DE [subseq from] PL=00 UP=0 BIOMES=0000000000001
#=GS MGYP000622162244/82-123  DE [subseq from] PL=11 UP=0 BIOMES=0000000000001
#=GS MGYP000879161010/23-109  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000082493926/2-68    DE [subseq from] PL=01 UP=0 BIOMES=0100000000000
#=GS MGYP001000196865/73-151  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP001118986647/2-63    DE [subseq from] PL=11 UP=0 BIOMES=0000000100000
#=GS MGYP001057493055/3-64    DE [subseq from] PL=10 UP=0 BIOMES=0110000000000
#=GS MGYP001042885990/40-126  DE [subseq from] PL=00 UP=0 BIOMES=1000000000000
#=GS MGYP000350142192/10-67   DE [subseq from] PL=10 UP=0 BIOMES=0110000000000
#=GS MGYP000470949074/43-125  DE [subseq from] PL=01 UP=0 BIOMES=0000110000000
#=GS MGYP001026134388/26-111  DE [subseq from] PL=00 UP=1 BIOMES=1000000000000
#=GS MGYP000214475875/28-111  DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP000689962398/1-60    DE [subseq from] PL=01 UP=0 BIOMES=0100000000000
#=GS MGYP000309592821/8-92    DE [subseq from] PL=01 UP=0 BIOMES=0000000000001
#=GS MGYP000005525325/24-109  DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP000431536062/25-111  DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP000406130638/29-113  DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP000595471963/10-55   DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP000131977678/52-135  DE [subseq from] PL=00 UP=0 BIOMES=0000100000000
#=GS MGYP000409760563/54-127  DE [subseq from] PL=01 UP=0 BIOMES=0110000000000
#=GS MGYP000933751415/46-103  DE [subseq from] PL=01 UP=0 BIOMES=1000000000000
#=GS MGYP000264543437/3-76    DE [subseq from] PL=10 UP=0 BIOMES=0000110000000
#=GS MGYP000573423017/34-114  DE [subseq from] PL=00 UP=0 BIOMES=0000100000000
#=GS MGYP000270575750/92-175  DE [subseq from] PL=00 UP=0 BIOMES=0000100000000
#=GS MGYP000586093286/11-93   DE [subseq from] PL=00 UP=0 BIOMES=0000100000000
#=GS MGYP000425990483/91-172  DE [subseq from] PL=10 UP=0 BIOMES=0000100000000
#=GS MGYP000872269488/10-93   DE [subseq from] PL=10 UP=0 BIOMES=1000000000000
#=GS MGYP001137319156/28-68   DE [subseq from] PL=10 UP=0 BIOMES=0000000100000
#=GS MGYP000459631968/23-109  DE [subseq from] PL=00 UP=0 BIOMES=0110000000000
#=GS MGYP000254969393/32-91   DE [subseq from] PL=01 UP=0 BIOMES=0101000000000
#=GS MGYP000210695467/27-112  DE [subseq from] PL=00 UP=0 BIOMES=0100000000000
#=GS MGYP000624981020/34-118  DE [subseq from] PL=01 UP=0 BIOMES=0101000000000
#=GS MGYP000051825418/58-142  DE [subseq from] PL=10 UP=0 BIOMES=0110000000000
#=GS MGYP000061131586/4-65    DE [subseq from] PL=10 UP=0 BIOMES=1000000000000

query                            SGHTAHVDEAVKHAEEAVAHGKE--G--HTDQLLEHAKESLTHA-----K-AA----S----E---A-----G---G--N---T--H-------VGHGIKHLEDAIKHGEE--G--HVGVATKHAQEAIEHLRASEHKSH
MGYP000467963421/26-116          -GHTAHVDEAVKHAEEAVAHGKE--G--HTDQLLEHAKESLTHA-----K-AA----S----E---A-----G---G--N---T--H-------VGHGIKHLEDAIKHGEE--G--HVGVATKHAQEAIEHLRASEHKS-
MGYP000846229465/30-113          ------TSEAMKHAKEAQTHGKA--G--HAKELLTHAEESLKHA-----K-KALPELS----D---A-----T---Q--R---V--H-------VTESIRHLDQAIAHAKE--N--HAEEATKHVDEAITHLK-------
MGYP000846229465/117-203         ---NAHIVEAIEHAKEAQTHGKA--G--HAKELLTHAEESLKHA-----K-IALPELS----D---G-----T---Q--R---V--H-------VTESIRHLEQAIAHAKE--D--HAKEATKHVDEAIDHLK-------
MGYP001107424229/29-115          ---AVHLDEALKHADEAVVHGKE--G--HTSVLLEHAKESLAHA-----KEAA----S----E---G-----E---G--N---A--H-------IVHGIKHLEDAIKHAEE--G--HAAEATKHVEEAINHLRASE----
MGYP001155424688/26-110          ----GHLDEALEHAQEAVTHGKE--G--HNDVLLQHAKESLEHA-----K-AA----R----A---A-----G--EG--N---T--H-------TDHGIKHLEDAIKHAEE--G--HTDVATKHVEEAIDHMKDT-----
MGYP000271262092/21-101          -------REALKHTREALTYARE--ALKYTREALKYTREALKHT-----R-EA----L----KH-TR-----E---A--L---T--Y-------IREALKHTREAIKYTSE--ALKYTREALKYTREAL-----------
MGYP000271262092/119-204         -------REALKYIREALKYTRE--ALKYTREALKHTREALTYA-----R-EA----L----K---Y-----TR-EA--L---K--Y-------TREALKHTREALKHTRE--ALMYIREALKYTREALKYTRE------
MGYP000271262092/153-232         -------------AREALKYTRE--ALKYTREALKHTREALKHT-----R-EA----L----MY-IR-----E---A--L---K--Y-------TREALKYTREALKYTRE--ALKHTHEALKHAREALKHTRE------
MGYP000271262092/397-484         -----HTREALKYTREALKHTRE--ALKYTRELLKYTREALKYT-----R-EA----L----K---Y-----TR-EA--L---K--H-------TREVLKYTREAIKYTRE--ALMYTREALKYTHEALKYTRV------
MGYP000403888639/59-146          -----HSAQALEHAIAAATHGQA--G--HASVLTEHAEVALEHA-----Q-AAE-KVS----E---G-----G---A--K---T--H-------MTEAVKHLNEAVKHGKM--D--HADVATEHVNEAITHIKASAD---
MGYP000403888639/147-232         -----HSAQALQHATAAATHGQA--G--HAGVLAEHARVALTHA-----Q-AA----E----Q---AL--EGE---A--K---A--H-------MTEAVKHLKEAFKHGNM--D--HADVATEHVNEAITHIKAS-----
MGYP001071433531/28-111          ----DHLAQAVDHAQQAATHGGM--G--HASVLVQHANMALTHA-----K-AA----P--------------A---D--N---P--H-------TVAAIASLTDAVTHGNM--D--HAPIATGMATSGVTSLQVAVH---
MGYP001071433531/110-191         ----VHIGMALDHGGQAVTHGGM--G--HAPVLVTHAEMALTHA-----R-AA----A----E---M-----S---D--S---P--H-------IGMAIEGLESAILHGGM--G--HAEIATTSATQAMSHFK-------
MGYP000364879671/27-111          ---DAHLAQAVTHAQQAAAHGGM--G--HASVLVEHANQALTHA-----N-MA----P----D-------------D--N---P--H-------TVAAIASLTDAVTHGNM--D--HAPVATGMANTGLASLQVAVH---
MGYP000364879671/110-191         ----VHVHQVMDHNMQAVTHGDM--G--HAPVLVTHAEVALTHA-----R-AA----A----E---I-----S---D--S---P--H-------IVMAIEALESAILHGGM--G--HAEVATESAKTAQSHLK-------
MGYP001155937486/27-110          ----DHLAQAVDHAQQAAAHGGM--G--HASILVQHAEMALTHA-----G-LA----P----D-------------D--N---P--Y-------TVAAVASLQEAIAHGNM--G--HAEIATGRVSQGLTHLGVAVH---
MGYP001155937486/107-190         --VAVHVGLAMDHAMQAVDHGGM--G--HAPLVVRHAEMALTHA-----R-AA----A----E---N-----S---D--S---P--H-------IGLAIEGLESAVNHGGM--S--HAEIAMNAAQGALNHLH-------
MGYP001034379205/29-115          ----KHTSEAIEHAIAAEKEGKS--G--KAKELLGHAEESLKHA-----K-AA---LP----E---V-----S---D--NDQRV--H-------VTESIRHLDLAIASAKE--N--DAKEATKHVDEAIVHLKK------
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