install_third_party_dependencies.sh

#!/bin/bash

# Download folding resources
wget -N --no-check-certificate -P openfold/resources \
    https://git.scicore.unibas.ch/schwede/openstructure/-/raw/7102c63615b64735c4941278d92b554ec94415f8/modules/mol/alg/src/stereo_chemical_props.txt

# Certain tests need access to this file
mkdir -p tests/test_data/alphafold/common
ln -rs openfold/resources/stereo_chemical_props.txt tests/test_data/alphafold/common

# Decompress test data
gunzip -c tests/test_data/sample_feats.pickle.gz > tests/test_data/sample_feats.pickle

python setup.py install

export LD_LIBRARY_PATH=$CONDA_PREFIX/lib:$LD_LIBRARY_PATH

echo "Attempting to download CUTLASS, required for Deepspeed Evoformer attention kernel"
git clone https://github.com/NVIDIA/cutlass --depth 1
conda env config vars set CUTLASS_PATH=$PWD/cutlass

# This setting is used to fix a worker assignment issue during data loading
conda env config vars set KMP_AFFINITY=none

# Reactivate env so that the above environment variables take effect
conda activate $CONDA_PREFIX