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Geoffrey Yu's avatar
added small test, train, and validation alignment files  
Geoffrey Yu committed
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# STOCKHOLM 1.0
#=GF ID 2Q2K_A-i1
#=GF AU jackhmmer (HMMER 3.3.2)

#=GS tr|A0A0K0ME10|A0A0K0ME10_9STAP/1-51 DE [subseq from] Plasmid segregation protein ParR OS=Staphylococcus schleiferi OX=1295 GN=NP71_p00120 PE=4 SV=1
#=GS tr|A0A0C5BVQ8|A0A0C5BVQ8_STAAU/1-51 DE [subseq from] Plasmid segregation protein ParR OS=Staphylococcus aureus OX=1280 GN=parR PE=4 SV=1
#=GS tr|A0A0D4ZYK6|A0A0D4ZYK6_STAEP/1-51 DE [subseq from] DNA-binding protein ParR OS=Staphylococcus epidermidis OX=1282 GN=parR PE=4 SV=1
#=GS tr|A0A0H2XKQ4|A0A0H2XKQ4_STAA3/1-51 DE [subseq from] Plasmid segregation protein ParR OS=Staphylococcus aureus (strain USA300) OX=367830 GN=SAUSA300_pUSA030035 PE=4 SV=1
#=GS tr|A0A0N9NJL4|A0A0N9NJL4_STAPS/1-51 DE [subseq from] Putative plasmid segregation protein ParR OS=Staphylococcus pseudintermedius OX=283734 GN=parR PE=4 SV=1
#=GS tr|A0A0U2CJ65|A0A0U2CJ65_STAEP/1-51 DE [subseq from] Plasmid segregation protein OS=Staphylococcus epidermidis OX=1282 GN=parR PE=4 SV=1
#=GS tr|A0A133QXU6|A0A133QXU6_STASI/1-51 DE [subseq from] Plasmid segregation protein ParR OS=Staphylococcus simulans OX=1286 GN=HMPREF3215_00002 PE=4 SV=1
#=GS tr|A0A141BHY3|A0A141BHY3_STAXY/1-51 DE [subseq from] DNA-binding protein OS=Staphylococcus xylosus OX=1288 GN=p11 PE=4 SV=1
#=GS tr|A0A141HMK9|A0A141HMK9_STAA8/1-51 DE [subseq from] ParR OS=Staphylococcus aureus subsp. aureus RN4220 OX=561307 GN=pGO400_p33 PE=4 SV=1
#=GS tr|A0A1B1UXS0|A0A1B1UXS0_STALU/1-51 DE [subseq from] Plasmid segregation protein ParR OS=Staphylococcus lugdunensis OX=28035 GN=parR PE=4 SV=1
#=GS tr|A0A1S7BGJ1|A0A1S7BGJ1_STAAU/1-51 DE [subseq from] DNA-binding protein ParR OS=Staphylococcus aureus OX=1280 GN=parR PE=4 SV=1
#=GS tr|A0A418HED5|A0A418HED5_STAGA/1-51 DE [subseq from] Plasmid segregation protein ParR OS=Staphylococcus gallinarum OX=1293 GN=BUY97_07835 PE=4 SV=1
#=GS tr|A0A507SJ94|A0A507SJ94_9STAP/1-51 DE [subseq from] Plasmid segregation protein ParR OS=Staphylococcus sp. SKL71187 OX=2497688 GN=EKV43_01520 PE=4 SV=1
#=GS tr|A0A6N0I4W4|A0A6N0I4W4_STAHO/1-51 DE [subseq from] Plasmid segregation protein ParR OS=Staphylococcus hominis OX=1290 GN=FOB69_12695 PE=4 SV=1
#=GS tr|A0A7G3T6L6|A0A7G3T6L6_9STAP/1-51 DE [subseq from] Plasmid segregation protein OS=Staphylococcus equorum OX=246432 PE=4 SV=1
#=GS tr|A0A848F022|A0A848F022_STACP/1-51 DE [subseq from] Plasmid segregation protein ParR OS=Staphylococcus capitis OX=29388 GN=HHM13_04665 PE=4 SV=1
#=GS tr|O87365|O87365_STAAU/1-51         DE [subseq from] Conserved domain protein OS=Staphylococcus aureus OX=1280 GN=parR PE=1 SV=1
#=GS tr|A0A7G3L2E1|A0A7G3L2E1_STAAU/1-51 DE [subseq from] Plasmid segregation protein ParR OS=Staphylococcus aureus OX=1280 PE=4 SV=1
#=GS tr|E4PYH1|E4PYH1_STAAU/1-39         DE [subseq from] DUF655 domain-containing protein OS=Staphylococcus aureus OX=1280 GN=SUM_0041p2 PE=4 SV=1
#=GS tr|A0A0Q9XW80|A0A0Q9XW80_9STAP/1-51 DE [subseq from] RHH_1 domain-containing protein OS=Staphylococcus sp. NAM3COL9 OX=1667172 GN=ACA31_00310 PE=4 SV=1

2Q2K_A                                      MGSSHHHHHHSSGLVPGSHMDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
tr|A0A0K0ME10|A0A0K0ME10_9STAP/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A0K0ME10|A0A0K0ME10_9STAP/1-51 PP ...................8*************************************************9
tr|A0A0C5BVQ8|A0A0C5BVQ8_STAAU/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A0C5BVQ8|A0A0C5BVQ8_STAAU/1-51 PP ...................8*************************************************9
tr|A0A0D4ZYK6|A0A0D4ZYK6_STAEP/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A0D4ZYK6|A0A0D4ZYK6_STAEP/1-51 PP ...................8*************************************************9
tr|A0A0H2XKQ4|A0A0H2XKQ4_STAA3/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A0H2XKQ4|A0A0H2XKQ4_STAA3/1-51 PP ...................8*************************************************9
tr|A0A0N9NJL4|A0A0N9NJL4_STAPS/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A0N9NJL4|A0A0N9NJL4_STAPS/1-51 PP ...................8*************************************************9
tr|A0A0U2CJ65|A0A0U2CJ65_STAEP/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A0U2CJ65|A0A0U2CJ65_STAEP/1-51 PP ...................8*************************************************9
tr|A0A133QXU6|A0A133QXU6_STASI/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A133QXU6|A0A133QXU6_STASI/1-51 PP ...................8*************************************************9
tr|A0A141BHY3|A0A141BHY3_STAXY/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A141BHY3|A0A141BHY3_STAXY/1-51 PP ...................8*************************************************9
tr|A0A141HMK9|A0A141HMK9_STAA8/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A141HMK9|A0A141HMK9_STAA8/1-51 PP ...................8*************************************************9
tr|A0A1B1UXS0|A0A1B1UXS0_STALU/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A1B1UXS0|A0A1B1UXS0_STALU/1-51 PP ...................8*************************************************9
tr|A0A1S7BGJ1|A0A1S7BGJ1_STAAU/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A1S7BGJ1|A0A1S7BGJ1_STAAU/1-51 PP ...................8*************************************************9
tr|A0A418HED5|A0A418HED5_STAGA/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A418HED5|A0A418HED5_STAGA/1-51 PP ...................8*************************************************9
tr|A0A507SJ94|A0A507SJ94_9STAP/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A507SJ94|A0A507SJ94_9STAP/1-51 PP ...................8*************************************************9
tr|A0A6N0I4W4|A0A6N0I4W4_STAHO/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A6N0I4W4|A0A6N0I4W4_STAHO/1-51 PP ...................8*************************************************9
tr|A0A7G3T6L6|A0A7G3T6L6_9STAP/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A7G3T6L6|A0A7G3T6L6_9STAP/1-51 PP ...................8*************************************************9
tr|A0A848F022|A0A848F022_STACP/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A848F022|A0A848F022_STACP/1-51 PP ...................8*************************************************9
tr|O87365|O87365_STAAU/1-51                 -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|O87365|O87365_STAAU/1-51         PP ...................8*************************************************9
tr|A0A7G3L2E1|A0A7G3L2E1_STAAU/1-51         -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGENP
#=GR tr|A0A7G3L2E1|A0A7G3L2E1_STAAU/1-51 PP ...................8*************************************************9
tr|E4PYH1|E4PYH1_STAAU/1-39                 -------------------MDKKETKHLLKIKKEDYPQIFDFLENVPRGTKTAHIREA------------
#=GR tr|E4PYH1|E4PYH1_STAAU/1-39         PP ...................8************************************97............
tr|A0A0Q9XW80|A0A0Q9XW80_9STAP/1-51         -------------------MSKQETNHLLKIKKKDYPQIFEFLEGVPKGTKTAHIREALLRYIEELGAPP
#=GR tr|A0A0Q9XW80|A0A0Q9XW80_9STAP/1-51 PP ...................789********************************************9765
#=GC PP_cons                                ...................8*************************************************9
#=GC RF                                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
//