blaze_interface.hh

//=====================================================
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
//=====================================================
//
// This program is free software; you can redistribute it and/or
// modify it under the terms of the GNU General Public License
// as published by the Free Software Foundation; either version 2
// of the License, or (at your option) any later version.
//
// This program is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
// GNU General Public License for more details.
// You should have received a copy of the GNU General Public License
// along with this program; if not, write to the Free Software
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
//
#ifndef BLAZE_INTERFACE_HH
#define BLAZE_INTERFACE_HH

#include <blaze/Math.h>
#include <blaze/Blaze.h>
#include <Eigen/Core>
// using namespace blaze;

#include <vector>

template <class real>
class blaze_interface {
 public:
  typedef real real_type;

  typedef std::vector<real> stl_vector;
  typedef std::vector<stl_vector> stl_matrix;

  typedef blaze::DynamicMatrix<real, blaze::columnMajor> gene_matrix;
  typedef blaze::DynamicVector<real> gene_vector;

  static inline std::string name() { return "blaze"; }

  static void free_matrix(gene_matrix& A, int N) { return; }

  static void free_vector(gene_vector& B) { return; }

  static inline void matrix_from_stl(gene_matrix& A, stl_matrix& A_stl) {
    A.resize(A_stl[0].size(), A_stl.size());

    for (int j = 0; j < A_stl.size(); j++) {
      for (int i = 0; i < A_stl[j].size(); i++) {
        A(i, j) = A_stl[j][i];
      }
    }
  }

  static inline void vector_from_stl(gene_vector& B, stl_vector& B_stl) {
    B.resize(B_stl.size());
    for (int i = 0; i < B_stl.size(); i++) {
      B[i] = B_stl[i];
    }
  }

  static inline void vector_to_stl(gene_vector& B, stl_vector& B_stl) {
    for (int i = 0; i < B_stl.size(); i++) {
      B_stl[i] = B[i];
    }
  }

  static inline void matrix_to_stl(gene_matrix& A, stl_matrix& A_stl) {
    int N = A_stl.size();
    for (int j = 0; j < N; j++) {
      A_stl[j].resize(N);
      for (int i = 0; i < N; i++) {
        A_stl[j][i] = A(i, j);
      }
    }
  }

  static EIGEN_DONT_INLINE void matrix_matrix_product(const gene_matrix& A, const gene_matrix& B, gene_matrix& X,
                                                      int N) {
    X = (A * B);
  }

  static EIGEN_DONT_INLINE void transposed_matrix_matrix_product(const gene_matrix& A, const gene_matrix& B,
                                                                 gene_matrix& X, int N) {
    X = (trans(A) * trans(B));
  }

  static EIGEN_DONT_INLINE void ata_product(const gene_matrix& A, gene_matrix& X, int N) { X = (trans(A) * A); }

  static EIGEN_DONT_INLINE void aat_product(const gene_matrix& A, gene_matrix& X, int N) { X = (A * trans(A)); }

  static EIGEN_DONT_INLINE void matrix_vector_product(gene_matrix& A, gene_vector& B, gene_vector& X, int N) {
    X = (A * B);
  }

  static EIGEN_DONT_INLINE void atv_product(gene_matrix& A, gene_vector& B, gene_vector& X, int N) {
    X = (trans(A) * B);
  }

  static EIGEN_DONT_INLINE void axpy(const real coef, const gene_vector& X, gene_vector& Y, int N) { Y += coef * X; }

  static EIGEN_DONT_INLINE void axpby(real a, const gene_vector& X, real b, gene_vector& Y, int N) {
    Y = a * X + b * Y;
  }

  //   static inline void cholesky(const gene_matrix & X, gene_matrix & C, int N){
  //     C = X;
  //     recursive_cholesky(C);
  //   }

  //   static inline void lu_decomp(const gene_matrix & X, gene_matrix & R, int N){
  //     R = X;
  //     std::vector<int> ipvt(N);
  //     lu_factor(R, ipvt);
  //   }

  //   static inline void trisolve_lower(const gene_matrix & L, const gene_vector& B, gene_vector & X, int N){
  //     X = lower_trisolve(L, B);
  //   }

  static inline void copy_matrix(const gene_matrix& source, gene_matrix& cible, int N) { cible = source; }

  static inline void copy_vector(const gene_vector& source, gene_vector& cible, int N) { cible = source; }
};

#endif