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OpenDAS
FastFold
Commits
03ff54e5
Unverified
Commit
03ff54e5
authored
Feb 19, 2023
by
LuGY
Committed by
GitHub
Feb 19, 2023
Browse files
remove pre_built wheel of installation and update readme (#154)
parent
50620db4
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README.md
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03ff54e5
...
@@ -53,20 +53,13 @@ python setup.py install
...
@@ -53,20 +53,13 @@ python setup.py install
To leverage the power of FastFold, we recommend you to install
[
Triton
](
https://github.com/openai/triton
)
.
To leverage the power of FastFold, we recommend you to install
[
Triton
](
https://github.com/openai/triton
)
.
**NOTE: Triron needs CUDA 11.4 to run.**
```
bash
```
bash
pip
install
triton
==
2.0.0.dev20221005
pip
install
-U
--pre
triton
```
```
### Using PyPi
You can download FastFold with pre-built CUDA extensions.
Warning, only stable versions available.
```
shell
pip
install
fastfold
-f
https://release.colossalai.org/fastfold
```
## Use Docker
## Use Docker
### Build On Your Own
### Build On Your Own
...
...
docker/Dockerfile
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03ff54e5
...
@@ -6,11 +6,7 @@ RUN conda install openmm=7.7.0 pdbfixer -c conda-forge -y \
...
@@ -6,11 +6,7 @@ RUN conda install openmm=7.7.0 pdbfixer -c conda-forge -y \
RUN
pip
install
biopython
==
1.79 dm-tree
==
0.1.6 ml-collections
==
0.1.0
\
RUN
pip
install
biopython
==
1.79 dm-tree
==
0.1.6 ml-collections
==
0.1.0
\
scipy
==
1.7.1 ray pyarrow pandas einops
scipy
==
1.7.1 ray pyarrow pandas einops
RUN
pip
install
colossalai
==
0.1.10+torch1.12cu11.3
-f
https://release.colossalai.org
RUN
pip
install
colossalai
RUN
git clone https://github.com/openai/triton.git ~/triton
\
&&
cd
~/triton/python
\
&&
pip
install
-e
.
Run
git clone https://github.com/hpcaitech/FastFold.git
\
Run
git clone https://github.com/hpcaitech/FastFold.git
\
&&
cd
./FastFold
\
&&
cd
./FastFold
\
...
...
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