Commits · ff5b5a4a1090f79e82163f43909a1831b7fce924 · OpenDAS / dgl

18 Jun, 2020 4 commits

[Distributed] support no shared memory. (#1663) · ff5b5a4a

Da Zheng authored Jun 18, 2020

* support no shared memory.

* add test.

* add CAPI to check existence of shared memory.

* revert the change in src/runtime/ndarray.cc

* update docstring.

* fix compile.

ff5b5a4a

[Optimization] Optimize pickling of heterograph (#1570) · 0a4e8b32

Qidong Su authored Jun 18, 2020



* update

* update

* update

* update

* update

* update

* backward compatibility

* update

* update

* update

* update

* update

* test

* test

* update

* update

* update

* update

* update

* update
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

0a4e8b32

[Doc] fix a doc for partition_graph. (#1657) · dc86bd42
Da Zheng authored Jun 17, 2020
```
* fix a doc for partition_graph.

* Update partition.py

* fix.
```
dc86bd42
[BUGFIX] reshuffle node features in range partitioning. (#1659) · b9ec3e36
Da Zheng authored Jun 17, 2020
```
* fix a bug.

* fix test.

* simplify.

* fix test.

* test edge features.

* fix.
```
b9ec3e36

17 Jun, 2020 2 commits

[RPC] HandleCtrlC Register for handling Ctrl+C event. (#1652) · 8fccdaf6
Chao Ma authored Jun 17, 2020
```
* update

* update

* update

* update

* fix lint
```
8fccdaf6

[KVStore] Add fast-pull for kvstore (#1647) · b372b3c7

Chao Ma authored Jun 17, 2020

* add fast-pull

* update

* add fast-pull

* update

* update

* update

* update test

* update

* update

* update

* update

* update

* update

* update

* update

* add omp

* update

* update

b372b3c7

16 Jun, 2020 1 commit
- [KVStore] make pull/push handler per tensor. (#1646) · e8a56dc1
  Da Zheng authored Jun 15, 2020
```
* make pull/push handler per tensor.

* update.
```
  e8a56dc1
15 Jun, 2020 7 commits

[Feature] Range partition (#1522) · 41349dce

Da Zheng authored Jun 15, 2020



* add reorder immutable graph.

* add python API.

* add reorder for csr.

* remove gk version.

* fix

* add cpp test.

* bug fixes

* fix tests.

* fix bugs and add check

* fix test.

* add omp.

* add comments.

* add coo reorder.

* fix a bug.

* handle reorder for different graph structues.

* fix lint.

* fix.

* add original ids.

* reshuffle nodes before metis partition.

* inner nodes are in contiguous Id range.

* reshuffle nodes/edges when partitioning.

* load partition return graph partition book.

* use inner_node/inner_edges

* add and test range partition book.

* count inner_edge correctly.

* fix lint.

* fix lint.

* fix lint.

* fix errors.

* fix errors.

* fix for TF.

* fix.

* fix.

* change docstring.

* support logical and.

* add comments.

* avoid copy.

* fix

* update docstring.

* fix a bug.

* add range search.

* fix

* fix a bug.

* add more tests.

* load graph partition book.

* support shared memory for range partition book.

* fix a bug.

* fix.

* fix lint.

* remove check

* fix test.

* remove num_nodes and num_edges

* fix lint.

* fix graph partition book.

* address comments.

* use makedirs.

* fix compile
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Chao Ma <mctt90@gmail.com>

41349dce

[Bug?] Fix #1563 (#1642) · 3e72c53a
Quan (Andy) Gan authored Jun 15, 2020

3e72c53a

[Bug] fixing from_edge_list (#1615) · ba2ee7bd

Quan (Andy) Gan authored Jun 15, 2020


Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

ba2ee7bd

correct PinSAGE knn example syntax (#1617) · 3ebf2660
Theofilos Papapanagiotou authored Jun 15, 2020
```
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Chao Ma <mctt90@gmail.com>
```
3ebf2660

[Kernel] CUDA CSR2COO COOSort COO2CSR (#1620) · d6d517bb

Minjie Wang authored Jun 15, 2020



* add cuda source

* moving codes from kernel2 branch

* operator overloading

* Better error message for unsupported device

* fix c tests

* coo sort using cusparse

* move test_rpc to distributed

* lint

* address comments and add utests
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

d6d517bb

[NN] Add low memory support for nn.RelGraphConv (#1631) · 61f007c4

xiang song(charlie.song) authored Jun 15, 2020



* Add low memory support for relgraphconv
y

* lint

* Add tf support

* Fix lint

* Fix mxnet

* Fix mxnet

* Fix

* minor fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

61f007c4

[bugfix] Quick fix of #1547 (#1600) · 04522a76
Zihao Ye authored Jun 15, 2020
```
* upd

* upd
```
04522a76

13 Jun, 2020 1 commit
- [Bug] Fix broken initialization in Reddit (#1634) · 57d111f9
  Quan (Andy) Gan authored Jun 14, 2020
  
  57d111f9
12 Jun, 2020 1 commit

[Feature] Add dot product attention (#1604) · 02dd6d90

zhjwy9343 authored Jun 12, 2020



* Add dotproduct attention

* [Feature] Add dotproduct attention

* [Feature] Add dotproduct attention

* [Feature] Add dotproduct attention

* [New] Update landing page

* [New] Update landing page

* [New] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

02dd6d90

11 Jun, 2020 7 commits

[HeteroGraph] Improve Error Messages for find_edges (#1626) · fe207b45

Mufei Li authored Jun 11, 2020



* Improve error message

* Fix

* Fix
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

fe207b45

[CI] Use spawn in unittest instead of fork (#1627) · 77006db2

Jinjing Zhou authored Jun 11, 2020



* update

* update

* update

* update

* update

* update

* fix ci using spawn
Co-authored-by: aksnzhy <mctt90@gmail.com>

77006db2

[rpc] Move test_rpc.py to distributed and use dynamic port binding (#1623) · 0c313e51
Chao Ma authored Jun 11, 2020
```
* update

* update

* update

* update

* update

* update

* update

* update
```
0c313e51
Add ShawXh as Contributors (#1622) · 0c408603
xiang song(charlie.song) authored Jun 11, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
0c408603
[Fix] clang warnings (#1618) · 3ddc7b4d
Jinjing Zhou authored Jun 11, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
3ddc7b4d
[RPC] Add send_request_to_machine() and remote_call_to_machine() (#1619) · a67ba946
Chao Ma authored Jun 11, 2020
```
* add send_request_to_machine()

* update

* update

* update

* update

* update

* update

* fix lint

* update
```
a67ba946

Refactor distributed graph store (#1597) · 50962c43

Da Zheng authored Jun 10, 2020

* refactor graph store for new kvstore.

* fix kvstore.

* fix.

* fix lint complains.

* add docstring.

* small fix in graph partition book.

* fix.

* remove tests

* disable sampling.

* Revert "disable sampling."

This reverts commit 70451008f61ff1481d5dadbf8bd199470aee559d.

* Revert "remove tests"

This reverts commit 1394364243bdd73b669abde6193a74e2cda5521d.

50962c43

10 Jun, 2020 2 commits
- Fix input data source (#1612) · 8531ee6a
  xiang song(charlie.song) authored Jun 10, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-52-181.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
```
  8531ee6a
- [Test] Fix partition ci fail (#1614) · 484bbcc8
  Jinjing Zhou authored Jun 10, 2020
  
  484bbcc8
09 Jun, 2020 2 commits
- [KVStore] Update kvstore test (#1607) · 48cc8fa8
  Chao Ma authored Jun 09, 2020
```
* remove freeze

* update

* update

* fix lint

* update test

* update
```
  48cc8fa8
- [KVStore] Remove Freeze flag (#1605) · 8eab08d0
  Chao Ma authored Jun 09, 2020
```
* remove freeze

* update

* update

* fix lint
```
  8eab08d0
07 Jun, 2020 1 commit
- Fix (#1596) · cbe4c28f
  Mufei Li authored Jun 07, 2020
  
  cbe4c28f
05 Jun, 2020 1 commit
- [LifeSci] Move to Independent Repo (#1592) · 36c7b771
  Mufei Li authored Jun 05, 2020
```
* Move LifeSci

* Remove doc
```
  36c7b771
04 Jun, 2020 3 commits

[Example] Implement deepwalk by dgl and pytorch (#1503) · 94c67203

Hao Xiong authored Jun 04, 2020



* deepwalk

* add docstr, etc.

* add tested version

* some doc

* some doc

* add sample and some docs, fix a bug

* update speed

* update speed

* docs
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

94c67203

[KVStore] Re-write kvstore using DGL RPC infrastructure (#1569) · 64f49703

Chao Ma authored Jun 04, 2020

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update init_data

* update server_state

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* debug init_data

* update

* update

* update

* update

* update

* update

* test get_meta_data

* update

* update

* update

* update

* update

* debug push

* update

* update

* update

* update

* update

* update

* update

* update

* update

* use F.reverse_data_type_dict

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

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* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* update

* fix lint

* update

* fix lint

* update

* update

* update

* update

* fix test

* update

* update

* update

* update

* update

* update

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* update

* update

* update

* update

* set random seed

* update

64f49703

Fix tutorial (#1587) · 9779c026
Mufei Li authored Jun 04, 2020

9779c026

03 Jun, 2020 2 commits

[Data] Retry downloading once if dataset initialization fails (#1520) · 2b9d06b6

Quan (Andy) Gan authored Jun 03, 2020



* dataloader guard

* more fixes

* sets overwrite to true by default

* Update utils.py

* fix
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

2b9d06b6

[Dataset] Change Cora Split (#1583) · 90d2118d
Mufei Li authored Jun 03, 2020
```
* Use new version of Cora

* Fix import
```
90d2118d

02 Jun, 2020 4 commits
- [DGL-LifeSci] Handle Same Labels for ROC AUC (#1581) · b8dffcd5
  Mufei Li authored Jun 03, 2020
```
* Handle corner case for ROC AUC

* Update

* Update doct
```
  b8dffcd5
- [Warning Message] Enrich Warning Information for Readonly Graphs (#1578) · a304df5d
  Mufei Li authored Jun 02, 2020
```
* Enrich warning information for readonly graphs

* CI

* CI
```
  a304df5d
- [DGL-LifeSci] Allow Generating Vocabulary from a New Dataset (#1577) · 38b9c0f8
  Mufei Li authored Jun 02, 2020
```
* Generate vocabulary from a new dataset

* CI"
```
  38b9c0f8
- [Hetero] Allow Batching Graphs with Zero Nodes/Edges (#1575) · a936f9d9
  Mufei Li authored Jun 02, 2020
```
* Allow batching graphs with zero nodes and edges

* Fix the case without node/edge features

* Fix lint
```
  a936f9d9
31 May, 2020 1 commit

[Model] Add SIGN model to example (#1571) · e979685a

Lingfan Yu authored May 31, 2020

* sign model

* mini-batch GPU eval & set default hyper-parameters

* add readme for sign

* minor

e979685a

28 May, 2020 1 commit

[Test] add regression tests for graph partitioning. (#1561) · b9e4a5b7

Da Zheng authored May 28, 2020



* add tests.

* 111

* fix

* Update asv.conf.json

* fix.

* benchmark partition with livejournal.

* fix benchmark

* fix.

* fix.

* remove ogb

* Revert "Update asv.conf.json"

This reverts commit dd327a5564f4ef01795e444e79b17265b9c8b391.

* change branch

* depend pandas

* Revert "change branch"

This reverts commit 1d4f93756492a93f2e3cde07229a59a31a8c380b.

* Update README.md
Co-authored-by: VoVAllen <jz1749@nyu.edu>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

b9e4a5b7