GitLab

* Update model.py

* Update README.md
Co-authored-by: Zihao Ye <expye@outlook.com>

* add evolveGCN example

* small fix

* fix defect

* fix defect
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Create EEG-GCNN example.

* Update README.md

* Remove gitignore file.

* Update README.md

* change 'datas' to 'datasets'.

* Change train.py to main.py

* Added an entry in the indexing page.

* State "simplified version"; change how to run.

* Fix bug in contact

* Remove paper link in reference.

* Create working branch

* Add normalization of x.

* Update paper link and tags

* Update paper link in readme

* Update readme; add patient level indices

* Update readme. Add comments to models

* Update README.md

* change to with; specify location for ch and el; move note

* fix bug for note

* Add args for models; clean code.

* delete = in readme

* Add reference for spec_coh_values

* Added code for Rectifying (TypeError: unhashable type: 'slice') when copying file

* 1) added distributed preprocessing code to create ParMetis Input from CSV files
2) add code to run pm_dglpart on multiple machines
3) added support for recreating heteregenous graph from homo geneous graph based on dropped edges, as ParMetis currently only supports homogeneous graphs

* move to pandas

* Added comments and remove drop_duplicates as it was redundant

* Addressed Pr Comments

* Rename variable

* Added comment

* Added comment

* updated ReadMe
Co-authored-by: Ankit Garg <gaank@amazon.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* [model] add model example GeniePath

* improvements based on feedback

* improvements based on feedback
Co-authored-by: zhjwy9343 <6593865@qq.com>

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: zhjwy9343 <6593865@qq.com>

* [Model] add model example CARE-GNN

* update README

* improvements based on the review feedback

* fix missing item()
Co-authored-by: zhjwy9343 <6593865@qq.com>

* fix

* fix type
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* fix.

* fix.

* fix.

* fix.

* Fix test

* Deprecate old DistEmbedding impl, use synchronized embedding impl

* Basic imple of heterogeneous on homogenenous sampling

* make pass

* Pass C++ test

* Add python test code

* lint

* lint

* Add MultiLayerEtypeNeighborSampler

* Add unitest for single machine dataloader

* Add dist dataloader test for edge type sampler

* Fix lint

* fix

* support for per etype sample

* Fix some bug and enable distributed training with per edge sample

* fix

* Now distributed training works

* turn off some mxnet

* turn off mxnet for some dist test

* fix

* upd

* upd according to the comments

* Fix

* Fix test and now distributed works.

* upd

* upd

* Fix

* Fix bug

* remove dead code.

* upd

* Fix

* upd

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* add model example GCN-based Anti-Spam

* update example index

* add usage info

* improvements as per comments

* fix image invisiable problem

* add image file
Co-authored-by: zhjwy9343 <6593865@qq.com>

* support hetero RGCN.

* fix.

* simplify code.

* sample_neighbors return heterograph directly.

* avoid using to_heterogeneous.

* compute canonical etypes in advance.

* fix tests.

* fix.

* fix distributed data loader for heterograph.

* use NodeDataLoader.

* fix bugs in partitioning on heterogeneous graphs.

* fix lint.

* fix tests.

* fix.

* fix.

* fix bugs.

* fix tests.

* fix.

* enable coo for distributed.

* fix.

* fix.

* fix.

* fix.

* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>

[Feature][Performance][GPU] Introducing UnifiedTensor for efficient zero-copy host memory access from GPU (#3086)

* Add pytorch-direct version

* Initial commit of unified tensor

* Merge branch 'master' of https://github.com/davidmin7/dgl



* Remove unnecessary things

* Fix error message

* Fix/Add descriptions

* whitespace fix

* add unpin

* disable IndexSelectCPUFromGPU with no CUDA

* add a newline for unified_tensor.py

* Apply changes based on feedback

* add 'os' module

* skip unified tensor unit test for cpu only

* Update tests/pytorch/test_unified_tensor.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* reflect feedback
Co-authored-by: shhssdm <shhssdm@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update

* Update

* Update dependencies

* Update

* Update

* Fix ogbn-products gat

* Update

* Update

* Reformat

* Fix typo in node2vec_random_walk

* Specify file encoding

* Working for 6.7

* Update

* Fix subgraph

* Fix doc for sample_neighbors_biased

* Fix hyperlink

* Add example for udf cross reducer

* Fix

* Add example for slice_batch

* Replace dgl.bipartite

* Fix GATConv

* Fix math rendering

* Fix doc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-22-156.us-west-2.compute.internal>

* fix.

* fix.

* fix.

* fix.

* Fix test

* Deprecate old DistEmbedding impl, use synchronized embedding impl

* update doc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* add left normalizer for gcn

* fix

* fixes and some bug stuff

* fix breakline in fakenews.py

* fix inconsistent argument name

* modify incorrect example and deprecated graph type

* modify docstring and example in knn_graph

* fix incorrect node type
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* add a warning for chebconv

* fix and docstrings

* update bgnn

* fix
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* Update aug.py

* Update aug.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* fix faiss issue on k 3

* Add Hilander paper link
Co-authored-by: Tong He <hetong007@gmail.com>

* add hilander model implementation draft

* use focal loss

* fix

* change data root

* add necessary scripts

* update download links

* update

* update example table

* fix

* update readme with numbers

* add empty folder

* only eval at the end

* set up hilander

* inform results may fluctuate

* address comments
Co-authored-by: sneakerkg <xiaotj1990327@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-212.us-east-2.compute.internal>

* fix bugs in partitioning on heterogeneous graphs.

* fix.

* fix.

* fix example.

* fix.

* fix test.

* fix.

* fix.

* fix.

* fix tests.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>

* Fix example datasplitting

* Remove left-over split parameter

* Remove unused parameter

* Set epoch when using multiple GPUs
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* update docstrings and tidy code

* add docs

* address comments

* Update __init__.py

* address comments

* csr and csc creation

* fix

* fix

* fixes to adj transpose

* fine

* raise error if indptr did not match number of nodes

* fix

* huh?

* oh
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

Co-authored-by: maqy1995 <maqingyun0718>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Fix example

* Remove register_data_args and revert  to dataset
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* add seal example

* 1. add paper infomation in examples/README
2. adjust codes
3. option test

* use latest `to_simple` to replace coalesce graph function

* remove outdated codes

* remove useless comment

* Node2vec
1.implement node2vec random walk c++ op
2.implement node2vec model
3.implement node2vec example

* add CMakeLists file modify

* refine c++ codes

* refine c++ codes

* add missing whitespace

* refine python codes

* add codes

* add node2vec_impl.h

* fix codes

* fix code style problem

* fixes

* remove

* lots of changes

* add benchmark

* fixes
Co-authored-by: smilexuhc <smile.xuhc@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Fix subgraph tests

* Capture stdout for distributed test

* Capture stdout for distributed test

* Update

* Update

* Update

* Update subgraph.cc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* add.

* fix.

* fix.

* fix.

* fix.

* add tests.

* support node split and edge split.

* support 1 partition.

* add tests.

* fix.

* fix test.

* use hierarchical partition.

* add check.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-22-57.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>

Co-authored-by: zhjwy9343 <6593865@qq.com>