GitLab

* WIP: api

* dgl.sampling, dgl.data

* dgl.sampling; dgl.dataloading

* sampling packages

* convert

* subgraph

* deprecate

* subgraph APIs

* All docstrings for convert/subgraph/transform

* almost all funcs under dgl namespace

* WIP: DGLGraph

* done graph query

* message passing functions

* lint

* fix merge error

* fix test

* lint

* fix
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* Update graph

* Fix for dgl.graph

* from_scipy

* Replace canonical_etypes with relations

* from_networkx

* Update for hetero_from_relations

* Roll back the change of canonical_etypes to relations

* heterograph

* bipartite

* Update doc

* Fix lint

* Fix lint

* Fix test cases

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix test

* Fix

* Update

* Use DGLError

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* rewrite sanity checks

* delete unnecessary checks

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Update

* Fix

* Update

* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* update knn graph docs

* more docs

* [Doc] transform module docstrings

* remove copy_ndata and copy_edata

* fix

* lint

* fix

* fix

* fix

* clean up docstrings

* fix docstring

* dtype specifications

* addresses comments

* fix
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* WIP: frame refactor

* new frame

* simple update_all builtin

* move all subgraph routines into the same file

* sddmm & spmm schedule; node & edge udf

* degree bucketing

* some tricky 0deg corner cases

* bug in frame append

* merge test_hetero_basics and test_basics

* some code rearange

* fix test_heterograph

* add mean spmm

* enable all builtin combinations

* pass gpu test

* pass pytorch tests

* wip

* fix some pt debugging codes

* fix bug in mxnet backward

* pass all mxnet utests

* passed tf tests

* docstring

* lint

* lint

* fix broadcasting bugs

* add warning and clamp for mean reducer

* add test for zero-degree mean

* address comments

* lint

* small fix

* upd

* upd

* upd

* lint

* fix

* fix test

* fix

* fix

* upd

* upd

* upd

* upd

* upd

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* upd

* upd

* upd

* upd

* upd tutorial

* upd

* upd

* fix kg

* upd doc organization

* refresh test

* upd

* refactor doc

* fix lint
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>

* [BUG] Fix #717

* fix mxnet test

* check the number of columns.

* add test.

* upd

* upd

* reformat

* upd

* upd

* add test

* fix arange

* fix slight bug

* upd

* trigger

* upd docs

* upd

* upd

* upd

* change subgraph to be raw data wrapper

* upd

* fix test

* fix lint for graph_index.py

* pylint for base.py

* pylint for batched_graph.py

* pylint for frame.py; simplify and fix bugs in frame when index is slice type

* pylint for graph.py

* pylint for immutable_graph_index.py

* pylint for init.py

* pylint for rest files in root package

* pylint for _ffi package

* pylint for function package

* pylint for runtime package

* pylint for runtime.ir package

* add pylint to ci

* fix mx tests

* fix lint errors

* fix ci

* fix as requested

* fix lint

* correct vid mapping API.

* fix sse.

* docstrings for graph mutation & queries

* [Doc] contrib.sampler. (#200)

* subgraph docs

* updates

* lazy eval edge ids.

* parallelize node id lookup.

* fix a bug.

* use mxnet for index.

* use update_all in the subgraph training.

* sample neighbors.

* Revert "parallelize node id lookup."

This reverts commit e661f69bb06cb5a7c246f0e106f245e27800e220.

* update README.

* cache subgraphs.

* support all degrees.

* cache adj in CPU.

* fix a bug in sse.

* print.

* raise error on mutable graphs.

* measure train time per epoch.

* fix a bug in graph_index.

* remove readonly in DGLSubGraph.

* cache subgraph properly.

* accelerate getting adjacency.

* split infer.

* lazy eval edges.

* specify inference mode.

* update for new sampler.

* use new mxnet sampling api.

* fix indent.

* remove profiling code.

* remove mxnet from sampler.

* return a lambda function for graph edges.

* add docs for immutable subgraph.

* Revert "return a lambda function for graph edges."

This reverts commit 0de5d7f100e230c518a3fb8976a6227f474d09ee.

* get parent_eid.

* move gat to the new api.

* fix gcn.

* update sse.

* fix dgl core.

* update sse.

* fix small bugs in dgl core.

* fix mxnet tests.

* retrigger

* address comments and fix more bugs.

* fix

* fix tests.

* add immutable graph index.

* update ImmutableGraphIndex.

* add benchmarks of subgraph generation.

* fix node_subgraphs.

* use scipy synthetic data in immutable graph.

* create immutable_graph.

* use spmv in gcn.

* fix immutable graph index.

* update graph index.

* create ImmutableSubgraphIndex.

* return subgraph node and edge mapping.

* fix benchmark.

* add mapping to subgraph nid.

* test in_edges and out_edges.

* update benchmark.

* Fix immutable subgraph.

* complete in_edges and out_edges.

* fix benchmarks.

* add test on node_subgraphs

* add sse.

* construct subgraphs in parallel.

* add in/out degree(s).

* make immutable graph index backend-specific.

* implement has_edge(s) and edge_id(s).

* Revert "use spmv in gcn."

This reverts commit 9cfed5f5fb3dd2ed9b98745348b1c0e9731ed7f7.

* implement node_subgraphs in GraphIndex.

* fix sse.

* address comments.

* address comments.

* Update mxnet docker.

* update subgraph.

* update subgraph API.

* keep node embedding.

* subgraph copy from

* WIP

* cached members

* Change all usage of id tensor to the new Index object; remove set device in DGLGraph;

* subgraph merge API tested

* add dict type reduced msg test

* subgraph

* more test cases

* WIP

* new FrameRef and test

* separate nx init code

* WIP

* subgraph code and test

* line graph code and test

* adding new test for adding new features on line graphs

* no backtracking line graph

* fix inplace relabel