GitLab

* save mem.

* save mem.

* reduce mem

* fix test

* fix lint

* fix test

* fix.

* fix.

* fix.

* fix.

* fix lint.

* fix backend operator.

* fix tensorflow operators.

* fix.

* revert change in mxnet operator.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>

* add reorder immutable graph.

* add python API.

* add reorder for csr.

* remove gk version.

* fix

* add cpp test.

* bug fixes

* fix tests.

* fix bugs and add check

* fix test.

* add omp.

* add comments.

* add coo reorder.

* fix a bug.

* handle reorder for different graph structues.

* fix lint.

* fix.

* add original ids.

* reshuffle nodes before metis partition.

* inner nodes are in contiguous Id range.

* reshuffle nodes/edges when partitioning.

* load partition return graph partition book.

* use inner_node/inner_edges

* add and test range partition book.

* count inner_edge correctly.

* fix lint.

* fix lint.

* fix lint.

* fix errors.

* fix errors.

* fix for TF.

* fix.

* fix.

* change docstring.

* support logical and.

* add comments.

* avoid copy.

* fix

* update docstring.

* fix a bug.

* add range search.

* fix

* fix a bug.

* add more tests.

* load graph partition book.

* support shared memory for range partition book.

* fix a bug.

* fix.

* fix lint.

* remove check

* fix test.

* remove num_nodes and num_edges

* fix lint.

* fix graph partition book.

* address comments.

* use makedirs.

* fix compile
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Chao Ma <mctt90@gmail.com>

* Deprecate multi-graph

* Handle heterograph and edge_ids

* lint

* Fix

* Remove multigraph in C++ end

* Fix lint

* Add some test and fix something

* Fix

* Fix

* upd

* Fix some test case

* Fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* fix is_multigraph in from_coo.

* add tests for partition.

* fix.

* Revert "add tests for partition."

This reverts commit cb8c8555da3e0c70a482c2d639adce2943475bfc.

* fix everywhere from_scipy_sparse_matrix is used.

* get subgraph with halo.

* add partition function.

* add comment.

* parallel partition.

* fix a compilation error.

* fix lint error.

* address comments.

* add comments.

* fix for TF.

* WIP. remove graph arg in NodeBatch and EdgeBatch

* refactor: use graph adapter for scheduler

* WIP: recv

* draft impl

* stuck at bipartite

* bipartite->unitgraph; support dsttype == srctype

* pass test_query

* pass test_query

* pass test_view

* test apply

* pass udf message passing tests

* pass quan's test using builtins

* WIP: wildcard slicing

* new construct methods

* broken

* good

* add stack cross reducer

* fix bug; fix mx

* fix bug in csrmm2 when the CSR is not square

* lint

* removed FlattenedHeteroGraph class

* WIP

* prop nodes, prop edges, filter nodes/edges

* add DGLGraph tests to heterograph. Fix several bugs

* finish nx<->hetero graph conversion

* create bipartite from nx

* more spec on hetero/homo conversion

* silly fixes

* check node and edge types

* repr

* to api

* adj APIs

* inc

* fix some lints and bugs

* fix some lints

* hetero/homo conversion

* fix flatten test

* more spec in hetero_from_homo and test

* flatten using concat names

* WIP: creators

* rewrite hetero_from_homo in a more efficient way

* remove useless variables

* fix lint

* subgraphs and typed subgraphs

* lint & removed heterosubgraph class

* lint x2

* disable heterograph mutation test

* docstring update

* add edge id for nx graph test

* fix mx unittests

* fix bug

* try fix

* fix unittest when cross_reducer is stack

* fix ci

* fix nx bipartite bug; docstring

* fix scipy creation bug

* lint

* fix bug when converting heterograph from homograph

* fix bug in hetero_from_homo about ntype order

* trailing white

* docstring fixes for add_foo and data views

* docstring for relation slice

* to_hetero and to_homo with feature support

* lint

* lint

* DGLGraph compatibility

* incidence matrix & docstring fixes

* example string fixes

* feature in hetero_from_relations

* deduplication of edge types in to_hetero

* fix lint

* fix

* moving heterograph index to another file

* node view

* python interfaces

* heterograph init

* bug fixes

* docstring for readonly

* more docstring

* unit tests & lint

* oops

* oops x2

* removed node/edge addition

* addressed comments

* lint

* rw on frames with one node/edge type

* homograph with underlying heterograph demo

* view is not necessary

* bugfix

* replace

* scheduler, builtins not working yet

* moving bipartite.h to header

* moving back bipartite to bipartite.h

* oops

* asbits and copyto for bipartite

* tested update_all and send_and_recv

* lightweight node & edge type retrieval

* oops

* sorry

* removing obsolete code

* oops

* lint

* various bug fixes & more tests

* UDF tests

* multiple type number_of_nodes and number_of_edges

* docstring fixes

* more tests

* going for dict in initialization

* lint

* updated api as per discussions

* lint

* bug

* bugfix

* moving back bipartite impl to cc

* note on views

* fix

* finish bipartite graph implementation; compiled

* finished heterograph implementation; compiled

* WIP: apis

* C API codes

* compiled

* WIP: python

* HeteroGraphIndex

* WIP: test

* add DGLContext support in ffi

* fix bug in has edge

* unittests except edge subgraph

* edge subgraph

* fix lint

* address comments

* poke ci

* try fix

* fix msvc

* upd

* upd

* reformat

* upd

* upd

* add test

* fix arange

* fix slight bug

* upd

* trigger

* upd docs

* upd

* upd

* upd

* change subgraph to be raw data wrapper

* upd

* fix test

* to simple

* WIP: multigraph flag

* graph index refactor; pass basic testing

* graph index refactor; pass basic testing

* fix bug in to_simple; pass torch test

* fix mx utest

* fix example

* fix lint

* fix ci

* poke ci

* poke ci

* WIP

* poke ci

* poke ci

* poke ci

* change ci workspace

* poke ci

* poke ci

* poke ci

* poke ci

* delete ci

* use enum for multigraph flag

* fix rgcn tutorial

* small fix

* upd

* findedge/s

* upd

* upd

* upd

* upd

* add test

* remove redundancy

* upd

* upd

* upd

* upd

* add edge_subgraph

* explicit cast

* add test immutable subg

* reformat

* reformat

* fix bug

* upd

* hotfix

* subgraph docs

* fix adj mat

* fix edges() order

* add test

* revert

* upd

* fix

* upd

* fix rgcn tutorial

* small fix

* upd

* findedge/s

* upd

* upd

* upd

* upd

* add test

* remove redundancy

* upd

* upd

* upd

* upd

* add edge_subgraph

* explicit cast

* add test immutable subg

* reformat

* reformat

* fix bug

* upd

* init.

* it's compiled.

* add immutable graph constructor.

* add immutable graph API.

* fix.

* impl get adjacency matrix.

* fix.

* fix graph_index from scipy matrix.

* add neighbor sampling.

* remap vertex ids.

* fix.

* move sampler test.

* fix tests.

* add comments

* remove mxnet-specific immutable graph.

* fix.

* fix lint.

* fix.

* try to fix windows compile error.

* fix.

* fix.

* add test.

* unify Graph and ImmutableGraph.

* fix bugs.

* fix compile.

* move immutable graph.

* fix.

* remove print.

* fix lint.

* fix

* fix lint.

* fix lint.

* fix test.

* fix comments.

* merge GraphIndex and ImmutableGraphIndex.

* temp fix.

* impl GetAdj.

* fix lint

* fix.

* fix.

* fix.

* fix.

* fix.

* use csr only for readonly graph.

* Revert "use csr only for readonly graph."

This reverts commit 8e24bb033af8504531b22849de5b7567b168e0d5.

* remove code.

* fix.

* fix.

* fix.

* fix.

* fix.

* fix.

* address comments.

* fix for comments.

* fix comments.

* revert.

* move test_graph_index to compute.

* fix.

* fix.

* impl GetAdj for coo.

* fix.

* fix tests.

* address comments.

* address comments.

* fix comment.

* address comments.

* use lambda.

* other comments.

* address comments.

* modify the semantics of edges.

* fix order.

* use DGLIdIter

* fix.

* remove NotImplemented.

* revert some code.

* fix lint for graph_index.py

* pylint for base.py

* pylint for batched_graph.py

* pylint for frame.py; simplify and fix bugs in frame when index is slice type

* pylint for graph.py

* pylint for immutable_graph_index.py

* pylint for init.py

* pylint for rest files in root package

* pylint for _ffi package

* pylint for function package

* pylint for runtime package

* pylint for runtime.ir package

* add pylint to ci

* fix mx tests

* fix lint errors

* fix ci

* fix as requested

* fix lint

* change Index.tolist -> Index.tonumpy; fix bug in traversal; remove dependencies in data

* fix import

* fix __all__ and some docstring

* fixing networkx conversion with 0 edges

* fixes as required

* remove obsolete comment

* multigraph support on graph index

* more tests

* multigraph flag, bugfix on clear & copy

* networkx interfaces

* including graph index tests in Jenkins

* node subgraph test

* edge subgraphs

* removing duplicates in pred/succ

* more explicit test and doc

* query source and destination from edge id

* subgraphindex

* renaming has_edge to has_edge_between, apply_edges adding eid

* send_on and send_and_recv_on

* DGLGraph edge subgraph

* merged send_on and send_and_recv_on

* change request

* removing hashmap

* creating multigraph by flag; mingw support

* changes per request

* reverting networkx auto multigraph discovery

* notes on send/send_and_recv on multigraphs

* changing test reducer from sum to max

* added a fixme note in spmv scheduler