GitLab

* compgcn

* readme

* readme

* update

* readme
Co-authored-by: zhjwy9343 <6593865@qq.com>

* RGAT baseline

* update links (data.dgl.ai hasn't refreshed yet)

* nvm still use dgl.ai domain

* descriptions

* actually it took less

* address comments

* stop worrying about cache

* update links

* oops

* [Example]Variational Graph Auto-Encoders

* change dgl dataset to single directional graph

* clean code

* refresh

* fix bug

* fix bug

* fix bug

* add gpu
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* remove num_workers.

* remove num_workers.

* remove num_workers.

* remove num-servers.

* update error message.

* update docstring.

* fix docs.

* fix tests.

* fix test.

* fix.

* print messages in test.

* fix.

* fix test.

* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>

* Update

* Add files via upload

* Add files via upload

* Add files via upload

Co-authored-by: messi-k <messi.k@kakaocorp.com>

* Add hgat example

* Add experiment

* Clean code

* clear the code

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Change the code title and folder name

* Ready to merge

* Prepare for rebase and change message passing function

* use git ignore to handle empty file

* change file permission to resolve empty file

* Change permission

* change file mode

* Finish Coding

* working code cpu

* pyg compare

* Accelerate with batching

* FastMode Enabled

* update readme

* Update README.md

* refractor code

* Fix Bug

* add a simple temporal sampling method

* test results

* add train speed result

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* fix bug

* Fixed Grammar and Format Issue
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com>
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-4-63.ap-northeast-1.compute.internal>
Co-authored-by: WangXuhongCN <wangxuhongcn@163.com>
Co-authored-by: WangXuhongCN <34096632+WangXuhongCN@users.noreply.github.com>

* [Example ]add mvgrl

* [Doc] add mvgrl to readme

* add more comments

* fix typos

* replace tab with space

* [doc] replace tab with space

* [Doc] fix a typo

* fix minor typos

* fix typos

* fix typos

* fix typos

* fix typos

* fix
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

Method `dataset.num_labels` has been deprecated and replaced by `dataset.num_classes`.  
Updating the method name to avoid runtime warning.
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* gnn-explainer

* gnn-explainer

* gnn-explainer

* gnn-explainer

* fix

* fix

* fix

* readme

* readme
Co-authored-by: zhjwy9343 <6593865@qq.com>

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* Address bug where epochs exceed specified limit

* fix spacing

* [example] arma

* update

* update

* update

* update

* update

* [example] dimenet

* [docs] update dimenet

* [docs] update tf results

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* change DiffPoolBatchedGraphLayer

* fix bug and add benchmark

* upt

* upt

* upt

* upt
Co-authored-by: Tong He <hetong007@gmail.com>

* Add implementation of unsupervised model

* [Doc] Update Implementor's information

* [doc] add index of infograph

* [Feature] QM9_v2 Dataset Support

* fix a typo

* move qm9dataset from data to examples

* Update qm9_v2.py

* Infograph -> InfoGraph

* add implementation and results of semi-supervised model

* Update README.md

* Update README.md

* fix a typo

* Remove the duplicated links.

* fix some typos

* fix typos

* update model.py

* update collate fn

* remove unused functions

* Update model.py

* add device option

* Update evaluate_embedding.py

* Update evaluate_embedding.py

* Update unsupervised.py

* Fix typos

* fix bugs

* Update README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [Example]Variational Graph Auto-Encoders

* change dgl dataset to single directional graph

* clean code

* refresh
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>

* support gpu training.

* remove unnecessary arguments.

* update README.

* update time measurement.

* add zero_grad.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* Update README to use NFS, rather than copying files

* Update README.md

* Update README.md

* Update README.md

* Add ParMetis

* Update README.md

* fix directory.

* fix

* redo.

* fix.

* update.

* add more descriptions
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* [example] arma

* update

* update

* update

* update

* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* add seal example

* 1. add paper infomation in examples/README
2. adjust codes
3. option test

* use latest `to_simple` to replace coalesce graph function

* remove outdated codes

* remove useless comment

Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* add convert.

* fix.

* add write_mag.

* fix convert_partition.py

* write data.

* use pyarrow to read.

* update write_mag.py

* fix convert_partition.py.

* load node/edge features when necessary.

* reshuffle nodes.

* write mag correctly.

* fix a bug: inner nodes in a partition might be empty.

* fix bugs.

* add verify code.

* insert reverse edges.

* fix a bug.

* add get node/edge data.

* add instructions.

* remove unnecessary argument.

* update distributed preprocessing.

* fix readme.

* fix.

* fix.

* fix.

* fix readme.

* fix doc.

* fix.

* update readme

* update doc.

* update readme.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal>

* add dependencies for GNN-Film and dagnn

* fix

* fix

* fix

* [Bug Fix][Example] hgp-sl: More info for running

* change list to table

* change dataset summary in gxn and sagpool

* remove redundent
Co-authored-by: Tong He <hetong007@gmail.com>

* update

* Misc fix

* Update

* add multihead in DotGatConv

* Fix spacing issue

* Add Unit test for dotgat

* Modified Unit test for dotgat

* Add transformer like divisor

* Update dotgatconv.py

* Update hgao.py

* Update train.py
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* Fix pytorch TCP kvstore bug

* lint

* Fix

* upd

* Fix lint

* Fix

* trigger

* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal>

* ngcf

* ngcf

* update

* ngcf

* ngcf

* remove data

* update

* data
Co-authored-by: zhjwy9343 <6593865@qq.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* [Model] update PointNet example for Part Segmentation

* Fixed issues with pointnet examples

* update the README

* Added image

* Fixed README and tensorboard arguments

* clean

* Add timing

* Update README.md

* Update README.md

Fixed a typo
Co-authored-by: Tong He <hetong007@gmail.com>

[Dataset] Change the Data Type of the Node Features in GINDataset/TUDataset from Float64 to Float32 (#2592)

* Update

* Update

* Update

* update
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Tong He <hetong007@gmail.com>

It seems that there is a bug in Sparseadam in PyTorch, and it can be temporarily fixed by: 
optimizer = optim.SparseAdam(list(self.skip_gram_model.parameters()), lr=self.initial_lr)
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* Add sparse embedding for dgl and update rgcn example

* upd

* Fix

* Revert "Fix"

This reverts commit 4da87cdfb8b8c3506b7fc7376cd2385ba8045c2a.

* Fix

* upd

* upd

* Fix

* Add unitest and update impl

* fix

* Clean up rgcn example code

* upd

* upd

* update

* Fix

* update score

* sparse for sage

* remove model sparse

* upd

* upd

* remove global norm

* revert delete model_sparse.py

* update according to comments

* Fix doc

* upd

* Fix test

* upd

* lint

* lint

* lint

* upd

* upd

* clean up
Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal>

* add sagpool example for pytorch backend

* polish sagpool example for pytorch backend

* [Example] SAGPool: use std variance

* [Example] SAGPool: change to std

* add sagpool example to index page

* add graph property prediction tag to sagpool

* [Example] add graph classification example HGP-SL

* [Example] fix sagpool

* fix bug

* [Example] change tab to space in README of hgp-sl

* remove redundant files

* remote redundant network

* [Example]: change link from code to doc in HGP-SL

* [Example] in HGP-SL, change to meaningful name

* [Example] Fix path mistake for 'hardgat'

* [Bug Fix] Fix undefined var bug in LegacyTUDataset

* upt

* [Bug Fix] Fix cache file name bug in TUDataset

* [Example] Add GXN example for pytorch backend

* modify readme

* add more exp result
Co-authored-by: zhangtianqi <tianqizh@amazon.com>
Co-authored-by: Tong He <hetong007@gmail.com>

* dagnn

* dagnn

* Update README.md

* Update README.md

* fixed some details

* fixed some details

* Update README.md

* Update README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com>