GitLab

* [Feature] enable async transfer in NodeDataLoader for homograph

* fix lint issues

* fix device choose when creating stream

* fix test on cpu only machine

* fix pin_memory config

* support homo only

* avoid creating stream in each step and sync via event

* fix lint

* enable graph copy on non-default stream

* fix lint

* refine arg description

* fix conflicts

* first commit

* next commit

* third commit

* add ShaDow-GNN sampler and unit tests

* fixes

* lint

* cr*p

* lint

* fix lint

* fixes and more unit tests

* more tests

* fix docs

* lint

* fix

* fix

* fix

* fixes

* fix doc

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* lint fix

* lint fix

* Fix lint

* Update

* Fix CI

* Fix CI

* Fix

* CI

* Fix

* Update

* Fix

* Fix

* Fix CI

* Fix CI

* [BugFix] fix in/out degree computation

* add unit tests

* Based on issue #3436. Improving _SegmentCopyKernel s GPU utilization by switching to nonzero based thread assignment

* fixing lint issues

* Update cub for cuda 11.5 compatibility (#3468)

* fixing type mismatch

* tx guaranteed to be smaller than nnz. Hence removing last check

* minor: updating comment

* adding three unit tests for csr slice method to cover some corner cases
Co-authored-by: Abdurrahman Yasar <ayasar@nvidia.com>
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

* enable unit tests for dataloader on the GPU

* fix compatibility

* copyright

* fix linting
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>

* relabel gpu

* unittest for ralebl_ on the GPU

* finish Relabel_ for the GPU

* copyright

* re-enable the unittest for edge_subgrah on the GPU

* fix unittest for tensorflow

* use a fixed number of threads
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update

* Fix

* Fix

* Update

* Update

* Update

* Fix CI

* Fix

* Fix

* Fix

* Update

* Update

* Update

* Fix

* Fix

* Fix for TF

* [Model][Core] GATv2

* lint

* gatv2conv.py

* lint

* lint

* style and docs

* lint

* gatv2conv fix
Co-authored-by: Shaked Brody shakedbr@campus.technion.ac.il <shakedbr@tangerine.cslcs.technion.ac.il>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* added nn pytorch egatconv

* aligned with test build

* aligned with test build

* fixed wihite spaces

* fixed wihite spaces

* fixed wihite spaces

* added missing egatconv in imports

* added indentation in forward

* GATConv based implementation

* removed **kw_args

* added dgl relative imports

* PR corrections

* added DGL Error to EGATConv imports

* Update test_nn.py
Co-authored-by: Argusmocny <k.kaminski@cent.uw.edu.pl>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* gpu compact graph template

* cuda compact graph draft

* fix typo

* compact graphs

* pass unit test but fail in training

* example using EdgeDataLoader on the GPU

* refactor cuda_compact_graph and cuda_to_block

* update training scripts

* fix linting

* fix linting

* fix exclude_edges for the GPU

* add --data-cpu & fix copyright

* [Feature] enable create/set/free cuda stream for internal use

* add unit test

* fix unit test failure on mxnet and tf

* refactor stream wrapper

* fix lint error

* fix lint error

Co-authored-by: JingchengYu94 <jingchengyu94@gmail.com>

* graceful c++ exception in OpenMP

* credits

* add test
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* [Feature] Exclude edges in sample_neighbors

Extending sample_neighbors and sample_frontier
API to support exclude_edges parameter.

exclude_edges support tensor and dict data
Feature enable excluding certain edges
during neighborhood sampling
Exclude_edges contains EID's of edges
which will be excluded
during neighbor picking for seed nodes.

Added test case for heterograph and homograph
RFC issue id: 2944

* compatibility

* fix

* fix
Co-authored-by: Quan Gan <coin2028@hotmail.com>

[Performance][Feature] Add `src_nodes` paramter to `to_block()` to avoid cost running unique() when available. (#2973)

* Add lhs_nodes are paremeter to to_block

* Update unit test

* Switch to simplified node conversion

* Switch lhs_nodes to be in/out parameter

* Update docs
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* [Performance] improve coo2csr space complexity when row is not sorted

* [Perf] replace std::vector<> by NDArray

* keep both impl of unsorted coo to csr and choose according to graph density dynamically

* refine criteria to choose btw Unsorted algos
Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-27.us-west-2.compute.internal>

* fix start_idx

* fix the bug when cuda > 0
Co-authored-by: Tong He <hetong007@gmail.com>

* rgcn with new heterograph API

* apply_edge() forward for multi relation

* undoing changes from rgcn-hetero

* backward apply_edge(copy_u) added

* unittest for apply_edge(copy_e)

* Compatible with new PRs

* resolving conflict with master

* Bringing back change after resolving conflict

* minor

* minor
Co-authored-by: Israt Nisa <nisisrat@amazon.com>

* Added binary builtinMsgFunc forward() for heterograph

* Added backward for u_op_v

* Supports all binary builtin forward

* Supports binary message funcs with reduce func sum

* lint check

* removed import torch from unittest

* enabled GPU test

* lint check

* Fixed docstrings

* rename func get_hs_id

* edited comment
Co-authored-by: Israt Nisa <nisisrat@amazon.com>

* remove

* remove

* fix

* remove

* remove

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

[Feature] Add a HINT for the per edge type sampler of heterogeneous DistGraph that highlighting the etypes are sorted already. (#3260)

* pass cpp test

* distgraph use sorted edge flag.

* lint

* triger

* update test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>

* Make column double indices lazy

* Copy indices to proper contexts

* Fix initialization

* Add unit test

* Fix unit test for tensorflow

* Remove unused member
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* handle empty frontiers.

* fix lint.

* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* Implement range based NDArrayPartition

* Finish implement range based partition support

* Add unit test

* Fix whitepace

* Add Kernel suffix

* Fix argument passing

* Add doxygen docs and improve variable naming

* Add unit test

* Add function for converting a partition book

* Add example to partition_op docs

* Fix dtype conversion for mxnet and tensorflow

* Update filter code

* Add unit tests

* Fixes

* Switch to indices

* Rename functions

* Fix linting

* Fix whitespace

* Add doc

* Fix heterograph

* Change workspace allocation

* Fix linting

* Fix docs in filter.py

* Add todo
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

[Tools] In `tools/launch.py`, correctly pass all DGL client/server env vars if udf is a multi-command (#3245)

* Correctly pass all DGL client/server env vars if udf is a multi-command

* Refactor to use wrap_cmd_with_local_envvars() helper fn

* Fix dist negative data loader bug

* upd

* Fix
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* Refactors torch dist launcher udf-wrap code to handle more python versions

* minor changes

* Add pytorch-direct version

* remove

* Add multi-gpu unified tensor test for pytorch

* relocate verification step to each process

* reduce number of workers

* add parameter
Co-authored-by: shhssdm <shhssdm@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* make heterogeneous find_edges

* add distributed EdgeDataLoader.

* fix.

* fix a bug.

* fix bugs.

* add tests on distributed heterogeneous graph sampling.

* fix.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>