GitLab

* code

* joint_union

* joint union pass all test

* test case for test_transform

* upd

* lint

* lint

* Fix

* list

* Fix

* Fix

* update to_bidirected impl

* Fix

* Fix

* upd

* remove joint_union
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* To simple

* lint

* upd

* more test

* fix

* Fix

* Fix

* add share edata

* doc

* Fix

* Fix

* Fix

* Fix

* lint

* lint

* Fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* init

* reverse(by minjie

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* gpu

* upd

* upd

* upd

* upd

* udp

* upd

* upd

* imidiot

* fix

* upd

* upd

* upd

* udp

* upd

* upd

* fix

* udp

* upd

* upd

* upd

* upd

* upd

* fix

* remove redundency

* upd

* upd

* upd

* cache

* upd

* upd

* upd

* upd

* upd

* udp

* upd

* trigger

* upd

* fix

* upd

* unused import

* upd

* upd

* reverse

* Add more test

* Fix lint

* Fix

* move to transform

* upd

* upd

* upd

* Add more test

* lint

* Fix

* Fix doc

* Fix

* test

* doc

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* line graph

* update docstring

* Add test and compile OK

* Add python API

* Fix linty

* Fix

* Fix

* upd

* upd

* Fix

* merge

* Fix

* fix

* upd

* lint

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* fix

* use utils.toindex in the right place.

* fix.

* update tensor for mxnet backend.

* fix

* fix

* Matrix to simple

* Pass test

* new impl

* Fix test

* Fix lint

* trigger

* upd

* Fix comments
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* neighbor sampler data loader first commit

* more commit

* nodedataloader

* fix

* update RGCN example

* update OGB

* fixes

* fix minibatch RGCN crashing with self loop

* reverting gatconv test code

* fix

* change to new solution that doesn't require tf dataloader

* fix

* lint

* fix

* fixes

* change doc

* fix docstring

* docstring fixes

* return seeds and input nodes from data loader

* fixes

* fix test

* fix windows build problem

* add pytorch wrapper

* fixes

* add pytorch wrapper

* add unit test

* add -1 support to sample_neighbors & fix docstrings

* docstring fix

* lint

* add minibatch rgcn evaluations
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Tong He <hetong007@gmail.com>

* 111

* add history version test

* fix

* 111

* save

* ``

* fix1

* 111

* add save heterograph

* lint

* lint

* add tests

* minor fix

* fix

* docs

* add format tets

* use unique_ptr

* fix

* fix interface

* 111

* 111

* fix

* lint

* fix

* add support to s3

* fix

* fix

* fix leak

* fix

* fix docs

* fix

* linlt

* fix

* fix

* fix

* address comment

* address comment
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* add constraint.

* fix bugs.

* temp fix.

* fix lint

* add balance_ntypes and balance_edges

* add comments.

* fix.

* fix

* Fix bugs in partitioning.

* add comment.

* fix lint.

* fix test.

* add more tests.

* simplify the fix

* fix.

* fix the bug for knngraph (#1667)

* fix the bug for knngraph (#1667)

* fix the bug for knngraph (#1667)

* fix the bug for knngraph (#1667)

* fix the bug for knngraph (#1667)

* fix the bug for knngraph (#1667)
Co-authored-by: jiruyi <18810981229@gmail.com>

* add cuda utils; change g.to; add g.device

* split array.h into several headers

* cuda index select

* file

* three cuda kernels

* add cuda elementwise arith and several others

* cuda CSRIsNonZero

* fix lint

* lint

* lint

* fix bug in changing ctx to property

* address comments

* remove unused codes

* address comments

* add reorder immutable graph.

* add python API.

* add reorder for csr.

* remove gk version.

* fix

* add cpp test.

* bug fixes

* fix tests.

* fix bugs and add check

* fix test.

* add omp.

* add comments.

* add coo reorder.

* fix a bug.

* handle reorder for different graph structues.

* fix lint.

* fix.

* add original ids.

* reshuffle nodes before metis partition.

* inner nodes are in contiguous Id range.

* reshuffle nodes/edges when partitioning.

* load partition return graph partition book.

* use inner_node/inner_edges

* add and test range partition book.

* count inner_edge correctly.

* fix lint.

* fix lint.

* fix lint.

* fix errors.

* fix errors.

* fix for TF.

* fix.

* fix.

* change docstring.

* support logical and.

* add comments.

* avoid copy.

* fix

* update docstring.

* fix a bug.

* add range search.

* fix

* fix a bug.

* add more tests.

* load graph partition book.

* support shared memory for range partition book.

* fix a bug.

* fix.

* fix lint.

* remove check

* fix test.

* remove num_nodes and num_edges

* fix lint.

* fix graph partition book.

* address comments.

* use makedirs.

* fix compile
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Chao Ma <mctt90@gmail.com>

* fix docs of to_block

* fix

* oops

* more fixes

* write warning for remove_edges.

* fix.
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* 111

* 111

* lint

* lint

* lint

* lint

* fix

* lint

* try

* fix

* lint

* lint

* test

* fix

* ttt

* test

* fix

* fix

* fix

* mxnet

* 111

* fix 64bits computation

* pylint

* roll back

* fix

* lint

* fix hetero_from_relations

* remove index_dtype in to_homo and to_hetero

* fix

* fix

* fix

* fix

* remove default

* fix

* lint

* fix

* fix error message

* fix error

* lint

* macro dispatch

* try

* lint

* remove nbits

* error message

* fix

* fix

* lint

* lint

* lint

* fix

* lint

* fix

* fix random walk

* lint

* lint

* fix

* fix

* fix

* lint

* fix

* lint
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* initial version from distributed training.

This is copied from multiprocessing training.

* modify for distributed training.

* it's runnable now.

* measure time in neighbor sampling.

* simplify neighbor sampling.

* fix a bug in distributed neighbor sampling.

* allow single-machine training.

* fix a bug.

* fix a bug.

* fix openmp.

* make some improvement.

* fix.

* add prepare in the sampler.

* prepare nodeflow async.

* fix a bug.

* get id.

* simplify the code.

* improve.

* fix partition.py

* fix the example.

* add more features.

* fix the example.

* allow one partition

* use distributed kvstore.

* do g2l map manually.

* fix commandline.

* a temp script to save reddit.

* fix pull_handler.

* add pytorch version.

* estimate the time for copying data.

* delete unused code.

* fix a bug.

* print id.

* fix a bug

* fix a bug

* fix a bug.

* remove redundent code.

* revert modify in sampler.

* fix temp script.

* remove pytorch version.

* fix.

* distributed training with pytorch.

* add distributed graph store.

* fix.

* add metis_partition_assignment.

* fix a few bugs in distributed graph store.

* fix test.

* fix bugs in distributed graph store.

* fix tests.

* remove code of defining DistGraphStore.

* fix partition.

* fix example.

* update run.sh.

* only read necessary node data.

* batching data fetch of multiple NodeFlows.

* simplify gcn.

* remove unnecessary code.

* use the new copy_from_kvstore.

* update training script.

* print time in graphsage.

* make distributed training runnable.

* use val_nid.

* fix train_sampling.

* add distributed training.

* add run.sh

* add more timing.

* fix a bug.

* save graph metadata when partition.

* create ndata and edata in distributed graph store.

* add timing in minibatch training of GraphSage.

* use pytorch distributed.

* add checks.

* fix a bug in global vs. local ids.

* remove fast pull

* fix a compile error.

* update and add new APIs.

* implement more methods in DistGraphStore.

* update more APIs.

* rename it to DistGraph.

* rename to DistTensor

* remove some unnecessary API.

* remove unnecessary files.

* revert changes in sampler.

* Revert "simplify gcn."

This reverts commit 0ed3a34ca714203a5b45240af71555d4227ce452.

* Revert "simplify neighbor sampling."

This reverts commit 551c72d20f05a029360ba97f312c7a7a578aacec.

* Revert "measure time in neighbor sampling."

This reverts commit 63ae80c7b402bb626e24acbbc8fdfe9fffd0bc64.

* Revert "add timing in minibatch training of GraphSage."

This reverts commit e59dc8957a414c7df5c316f51d78bce822bdef5e.

* Revert "fix train_sampling."

This reverts commit ea6aea9a4aabb8ba0ff63070aa51e7ca81536ad9.

* fix lint.

* add comments and small update.

* add more comments.

* add more unit tests and fix bugs.

* check the existence of shared-mem graph index.

* use new partitioned graph storage.

* fix bugs.

* print error in fast pull.

* fix lint

* fix a compile error.

* save absolute path after partitioning.

* small fixes in the example

* Revert "[kvstore] support any data type for init_data() (#1465)"

This reverts commit 87b6997b

.

* fix a bug.

* disable evaluation.

* Revert "Revert "[kvstore] support any data type for init_data() (#1465)""

This reverts commit f5b8039c6326eb73bad8287db3d30d93175e5bee.

* support set and init data.

* support set and init data.

* Revert "Revert "[kvstore] support any data type for init_data() (#1465)""

This reverts commit f5b8039c6326eb73bad8287db3d30d93175e5bee.

* fix bugs.

* fix unit test.

* move to dgl.distributed.

* fix lint.

* fix lint.

* remove local_nids.

* fix lint.

* fix test.

* remove train_dist.

* revert train_sampling.

* rename funcs.

* address comments.

* address comments.

Use NodeDataView/EdgeDataView to keep track of data.

* address comments.

* address comments.

* revert.

* save data with DGL serializer.

* use the right way of getting shape.

* fix lint.

* address comments.

* address comments.

* fix an error in mxnet.

* address comments.

* add edge_map.

* add more test and fix bugs.
Co-authored-by: Zheng <dzzhen@186590dc80ff.ant.amazon.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-6-131.us-east-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-26-167.us-east-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-250.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-30-135.us-west-2.compute.internal>

* add clone function to frame

* add utest

* replace all local_var with local_scope

* fix utest

* avoid creating canonical types in __getitem__

* lint

* try another utest  appraoch for mx

* utest

* fix

* fix mapping array for empty node set

* Update

* Update

* Update

* Deprecate multi-graph

* Handle heterograph and edge_ids

* lint

* Fix

* Remove multigraph in C++ end

* Fix lint

* Add some test and fix something

* Fix

* Fix

* upd

* Fix some test case

* Fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* [Feature] Casting between DGLGraph and DGLHeteroGraph

* lint

* address comments
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* [BUG] Another fix on remove edges when all edges are removed

* fix mxnet

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* change the model to use node embedding only

* minibatch training

* add readme

* small fix

* backward-compatible

* backward compatible

* modify to_block; rgcn changed

* fix

* fix transform

* fix bug in unittest script

* docstring

* fix lint

* add tests

* address comments; fix offline eval

* gitignore

* fix a partition.

* add comments.

* make graph symmetric

* call gklib routine.

* use gklib version except in windows.

* minor errors.

* fix test.

* update doc.

* fix a compile error.

* fix.

* add comments for the new C API.

* fix a bug.

* address comments.

* fix compile error.

* fix comment.

* add metis.

* add test.

* construct partition id.

* link to METIS github repo.

* update metis.

* add a tool for partitioning a graph.

* update metis.

* update.

* update.

* fix metis.

* fix lint

* fix indent.

* another way of building metis.

* disable metis in windows.

* test windows

* fix.

* disable metis for windows properly.

* fix for tensorflow.

* skip test for gpu.

* make graph symmetric

* address comments.

* more comments.

* fix compile

* fix a bug.

* add test.

* change the default #hops of HALO nodes.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-26-167.us-east-2.compute.internal>

* remove edge and to bipartite and graphsage with sampling

* fixes

* fixes

* fixes

* reenable multigpu training

* fixes

* compatibility in DGLGraph

* rename to compact_as_bipartite

* bugfix

* lint

* add offline inference

* skip GPU tests

* fix

* addresses comments

* fix

* fix

* fix

* more tests

* more docs and unit tests

* workaround for empty slice on empty data

* upd

* upd

* upd

* lint

* fix

* fix test

* fix

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd tutorial

* upd

* upd

* fix kg

* upd doc organization

* refresh test

* upd

* refactor doc

* fix lint
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>

* [WIP] PinSAGE operators

* moved the edge remapping mess into C

* some docstrings

* lint

* lint x2

* lint x3

* skip gpu test on topk

* extend pinsage to any metapath

* lint x4

* addresses #1265

* add always_preserve (fixes #1266) and fix a silly bug

* disable gpu test on compaction

* lint

* fix a horrible bug and add more tests

* lint

* addresses comments

* lint

* bugfix

* addresses comments
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>

* WIP: working on random choices

* light slice

* basic CPU impl

* add python binding; fix CreateFromCOO and CreateFromCSR returning unitgraph

* simple test case works

* fix bug in slicing probability array

* fix bug in getting the correct relation graph

* fix bug in creating placeholder graph

* enable omp

* add cpp test

* sample topk

* add in|out_subgraph

* try fix lint; passed all unittests

* fix lint

* fix msvc compile; add sorted flag and constructors

* fix msvc

* coosort

* COOSort; CSRRowWiseSampling; CSRRowWiseTopk

* WIP: remove DType in CSR and COO; Restrict data array to be IdArray

* fix all CSR ops for missing data array

* compiled

* passed tests

* lint

* test sampling out edge

* test different per-relation fanout/k values

* fix bug in random choice

* finished cpptest

* fix compile

* Add induced edges

* add check

* fixed bug in sampling on hypersparse graph; add tests

* add ascending flag

* in|out_subgraph returns subgraph and induced eid

* address comments

* lint

* fix

* get subgraph with halo.

* add partition function.

* add comment.

* parallel partition.

* fix a compilation error.

* fix lint error.

* address comments.

* add comments.

* fix for TF.

* Add HAN

* Fix

* WIP; load raw ACM dataset

* DGL's own preprocessing with metapath coalescer

* various fixes

* comparison against simple logistic regression

* rename

* fix test

* add transform

* lint

* lint

* fix

* fixmx

* fix

* add test

* fix typo

* fix default num_classes

* change to non-inplace operation

* fix lint

* fix

* fix

* fix lint

* fixlint