- 14 Jun, 2022 1 commit
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RecLusIve-F authored
* Add Flickr and Yelp dataset * Update flickr.py * update * Update yelp.py * Update yelp.py * update * Update yelp.py * Update test_data.py * Update yelp.py * update * Update test_data.py * Update yelp.py Co-authored-by:Mufei Li <mufeili1996@gmail.com>
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- 12 Jun, 2022 1 commit
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Huarui HE authored
* add argument reorder=False for citation_graph * add description of the argument reorder * add reordered/un_reordered save_path * add version number postfix Co-authored-by:Mufei Li <mufeili1996@gmail.com>
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- 07 Jun, 2022 1 commit
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ndickson-nvidia authored
* * Added specialization of cublasGemm function for `__half` type, to try to address https://github.com/dmlc/dgl/issues/3988 * * Added USE_FP16 guard * * Added test cases to test_segment_mm, to test newly-added FP16 specialization of cublasGemm * * Replaced for loop in test_segment_mm with pytest.mark.parametrize, as recommended Co-authored-by:
Xin Yao <xiny@nvidia.com>
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- 02 Jun, 2022 2 commits
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RecLusIve-F authored
* Fix bugs & Update dataset * Update * Update wikics.py * Update wikics.py * Update test_data.py * Update wikics.py * Update wikics.py * Update wikics.py * update * Update module.py * Update dgl.data.rst * Update wikics.py * Update wikics.py Co-authored-by:Mufei Li <mufeili1996@gmail.com>
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Mufei Li authored
* Update * CI * Update * Update * Fix * Fix
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- 28 May, 2022 1 commit
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Quan (Andy) Gan authored
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- 25 May, 2022 1 commit
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Minjie Wang authored
* cython nogil * move APIs to internal and add unit test * fix lint * disable callback array test
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- 24 May, 2022 1 commit
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Mufei Li authored
* Update module.py * Update utils.py * Update utils.py * Update utils.py * Update module.py * Update * Update * Update
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- 23 May, 2022 1 commit
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nv-dlasalle authored
Co-authored-by:Mufei Li <mufeili1996@gmail.com>
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- 17 May, 2022 1 commit
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ndickson-nvidia authored
* * Added half_(), float_(), and double_() functions to DGLHeteroGraph, HeteroNodeDataView, and HeteroEdgeDataView, for converting floating-point tensor data to float16, float32, or float64 precision * * Extracted out private functions for floating-point type conversion, to reduce code duplication * * Added test for floating-point data conversion functions, half_(), float_(), and double_() * * Moved half_(), float_(), and double_() functions from HeteroNodeDataView and HeteroEdgeDataView to Frame class * * Updated test_float_cast() to use dgl.heterograph instead of dgl.graph * Added to CONTRIBUTORS.md * * Changed data type conversion to be deferred until the data is accessed, to avoid redundant conversions of data that isn't used. * * Addressed issues flagged by linter * * Worked around a bug in the old version of mxnet that's currently used for DGL testing * * Only defer Column data type conversion if there is a pending device transfer or index sampling to be done. This is expected to be the desired behaviour based on discussions of a few use cases, as described in the comments. * * Moved floating-point feature data conversion functions to dgl.transforms.functional * Changed them from in-place behaviour to shallow copy (out-of-place) behaviour * * Fixed linter issues * * Removed lines that unintentionally added to_half, to_float, and to_double to DGLHeteroGraph * Moved _init_api line to the end of the file again * * Removed one of the two leading underscores from Frame.__astype_float, making it not fully private Co-authored-by:nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>
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- 16 May, 2022 3 commits
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nv-dlasalle authored
Prevent users from attempting to pin PyTorch non-contiguous tensors or views only encompassing part of tensor. (#3992) * Disable pinning non-contiguous memory * Prevent views from being converted for write * Fix linting * Add unit tests * Improve error message for users * Switch to pytest function * exclude mxnet and tensorflow from inplace pinning * Add skip * Restrict to pytorch backend * Use backend to retrieve device * Fix capitalization in decorator Co-authored-by:Quan (Andy) Gan <coin2028@hotmail.com>
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Mufei Li authored
* Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Fix * Update * Update * Update
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Xin Yao authored
* remove unnecessary induced vertices in EdgeSubgraph * add unit test
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- 07 May, 2022 1 commit
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RecLusIve-F authored
* [Model]P-GNN * updata * [Example]P-GNN * Update README.md * Add NodeFeatureMasking and NormalizeFeatures * Update * Update transforms.rst * Update * Update * Update * Update test_transform.py * Update * Update * Update test_transform.py * Update module.py * Update module.py * Update module.py Co-authored-by:Mufei Li <mufeili1996@gmail.com>
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- 23 Apr, 2022 1 commit
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Serge Panev authored
Signed-off-by:
Serge Panev <spanev@nvidia.com> Co-authored-by:
Mufei Li <mufeili1996@gmail.com>
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- 12 Apr, 2022 2 commits
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Quan (Andy) Gan authored
* cleaned pl node classification example * conform to PL's method of updating the dataloader * update * lint * fix test * fix
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nv-dlasalle authored
* Add failing unit test * Fix negative sampler edge types * fix test * oops * revert Co-authored-by:
Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by:
Quan Gan <coin2028@hotmail.com>
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- 11 Apr, 2022 1 commit
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Xin Yao authored
* enable uva for pinsage sampler * unit test * modify some checks on the python side * remove legacy random walk code * update unit test * update unit test * fix unit test * adjust checks * move some checks to c++ * move max_nodes check to cuda kernel * fix ci for tf Co-authored-by:
Quan (Andy) Gan <coin2028@hotmail.com> Co-authored-by:
nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>
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- 09 Apr, 2022 1 commit
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Rhett Ying authored
* [BugFix] record/restore pin status when pickle/unpickle * disable test on TF * set version as expected * unpin memory in test
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- 31 Mar, 2022 1 commit
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Quan (Andy) Gan authored
* fix uva with partial node types * lint * skip tensorflow unit test
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- 30 Mar, 2022 1 commit
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rudongyu authored
* [Transform] Random Walk Positional Encoding & Laplacian Positional Encoding * Update python/dgl/transforms/module.py Co-authored-by:
Mufei Li <mufeili1996@gmail.com> * Update python/dgl/transforms/functional.py Co-authored-by:
Mufei Li <mufeili1996@gmail.com> * Update python/dgl/transforms/functional.py Co-authored-by:
Mufei Li <mufeili1996@gmail.com> * Update python/dgl/transforms/functional.py Co-authored-by:
Mufei Li <mufeili1996@gmail.com> * Update python/dgl/transforms/functional.py Co-authored-by:
Mufei Li <mufeili1996@gmail.com> * Update python/dgl/transforms/functional.py Co-authored-by:
Mufei Li <mufeili1996@gmail.com> * Update python/dgl/transforms/functional.py & python/dgl/transforms/module.py * update python/dgl/transforms/functional.py * update doc indexing * update unit test * support weighted graphs for random_walk_pe * change reference * fix linter errors * fix datatype compatibility with MXNet & TF * fix device errors * fix result precision errors * change tensorflow abs api * reboost CI Co-authored-by:
Mufei Li <mufeili1996@gmail.com>
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- 24 Mar, 2022 1 commit
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Quan (Andy) Gan authored
* fix uva sampling with features * fix * add is_listlike function to distinguish strings from sequence * fix Co-authored-by:nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>
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- 24 Feb, 2022 2 commits
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Mufei Li authored
* Update * Update * Update * Fix * Update * Update * Update * Fix
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Rhett Ying authored
* add train_idx/val_idx/test_idx as dataset attributes * refine docstring
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- 23 Feb, 2022 2 commits
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Rhett Ying authored
* [Fix] be able to parse ids if numeric and non-numeric values are used together * add required package info and cache note into docstring * duplicate node id is not allowed
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Minjie Wang authored
* WIP: TypedLinear and new RelGraphConv * wip * further simplify RGCN * a bunch of tweak for performance; add basic cpu support * update on segmm * wip: segment.cu * new backward kernel works * fix a bunch of bugs in kernel; leave idx_a for future * add nn test for typed_linear * rgcn nn test * bugfix in corner case; update RGCN README * doc * fix cpp lint * fix lint * fix ut * wip: hgtconv; presorted flag for rgcn * hgt code and ut; WIP: some fix on reorder graph * better typed linear init * fix ut * fix lint; add docstring
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- 21 Feb, 2022 1 commit
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Quan (Andy) Gan authored
* fixes * fix * more fixes * update * oops * lint? * temporarily revert - will fix in another PR * more fixes * skipping mxnet test * address comments * fix DDP * fix edge dataloader exclusion problems * stupid bug * fix * use_uvm option * fix * fixes * fixes * fixes * fixes * add evaluation for cluster gcn and ddp * stupid bug again * fixes * move sanity checks to only support DGLGraphs * pytorch lightning compatibility fixes * remove * poke * more fixes * fix * fix * disable test * docstrings * why is it getting a memory leak? * fix * update * updates and temporarily disable forkingpickler * update * fix? * fix? * oops * oops * fix * lint * huh * uh * update * fix * made it memory efficient * refine exclude interface * fix tutorial * fix tutorial * fix graph duplication in CPU dataloader workers * lint * lint * Revert "lint" This reverts commit 805484dd553695111b5fb37f2125214a6b7276e9. * Revert "lint" This reverts commit 0bce411b2b415c2ab770343949404498436dc8b2. * Revert "fix graph duplication in CPU dataloader workers" This reverts commit 9e3a8cf34c175d3093c773f6bb023b155f2bd27f. Co-authored-by:
xiny <xiny@nvidia.com> Co-authored-by:
Jinjing Zhou <VoVAllen@users.noreply.github.com>
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- 18 Feb, 2022 2 commits
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Rhett Ying authored
* [Fix] Convert float64 to float32 when creating tensor * refine docstring
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Jinjing Zhou authored
* add * fix * fix * fix * fix * add * add * fix * fix * fix * new loader * fix * fix * fix for 3.6 * fix * add * add receipes and also some bug fixes * fix * fix * fix * fix receipies * allow AsNodeDataset to work on ogb * add ut * many fixes for nodepred-ns pipeline * receipe for nodepred-ns * Update enter/README.md Co-authored-by:
Zihao Ye <zihaoye.cs@gmail.com> * fix layers * fix * fix * fix * fix * fix multiple issues * fix for citation2 * fix comment * fix * fix * clean up * fix Co-authored-by:
Minjie Wang <wmjlyjemaine@gmail.com> Co-authored-by:
Minjie Wang <minjie.wang@nyu.edu> Co-authored-by:
Zihao Ye <zihaoye.cs@gmail.com>
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- 17 Feb, 2022 2 commits
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Mufei Li authored
* Update (#5) * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * FIx * Try * Update * Update * Update * Fix * Update * Fix * Fix * Fix * Fix * Update * Fix * Update * Update * Update * Fix * Fix * Update * Update * Update * Update * Fix * Fix * Fix * Update * Update * Update * Update * Update * Update README.md * Update * Fix * Update * Update * Fix * Fix * Fix * Update * Update * Update Co-authored-by:
Ubuntu <ubuntu@ip-172-31-6-240.us-west-2.compute.internal> * Update * Update * Fix * Update * Update * Update * Fix * Update * Update * Update * Update * Update * Update * CI Co-authored-by:
Ubuntu <ubuntu@ip-172-31-6-240.us-west-2.compute.internal> Co-authored-by:
Ubuntu <ubuntu@ip-172-31-57-123.us-west-2.compute.internal> Co-authored-by:
Quan (Andy) Gan <coin2028@hotmail.com>
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Rhett Ying authored
* [Feature] support non-numeric node_id/src_id/dst_id/graph_id and rename CSVDataset * change return value when iterate dataset * refine data_parser * force reload
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- 15 Feb, 2022 2 commits
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Mufei Li authored
* Update * Fix * Update
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Israt Nisa authored
* init * init * working cublasGemm * benchmark high-mem/low-mem, err gather_mm output * cuda kernel for bmm like kernel * removed cpu copy for E_per_Rel * benchmark code from Minjie * fixed cublas results in gathermm sorted * use GPU shared mem in unsorted gather mm * minor * Added an optimal version of gather_mm_unsorted * lint * init gather_mm_scatter * cublas transpose added * fixed h_offset for multiple rel * backward unittest * cublas support to transpose W * adding missed file * forgot to add header file * lint * lint * cleanup * lint * docstring * lint * added unittest * lint * lint * unittest * changed err type * skip cpu test * skip CPU code * move in-len loop inside * lint * added check different dim length for B * w_per_len is optional now * moved gather_mm to pytorch/backend with backward support * removed a_/b_trans support * transpose op inside GEMM call * removed out alloc from API, changed W 2D to 3D * Added se_gather_mm, Separate API for sortedE * Fixed gather_mm (unsorted) user interface * unsorted gmm backward + separate CAPI for un/sorted A * typecast to float to support atomicAdd * lint typecast * lint * added gather_mm_scatter * minor * const * design changes * Added idx_a, idx_b support gmm_scatter * dgl doc * lint * adding gather_mm in ops * lint * lint * minor * removed benchmark files * minor * empty commit Co-authored-by:Israt Nisa <nisisrat@amazon.com>
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- 11 Feb, 2022 1 commit
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Jinjing Zhou authored
* add ut * add doc link * install dep * add * Revert "install dep" This reverts commit e574a8377144749056c6849b655004df2771e179. * add * merge fix * rm files * fix * fix * fix * fix * fix typo * fix tf * fix * fix * fix * fix * fix * fix dependency * fix test * fix * fix * add doc * fix * fix * fix test * fix test Co-authored-by:Minjie Wang <wmjlyjemaine@gmail.com>
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- 10 Feb, 2022 1 commit
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Rhett Ying authored
* [data] refine AsNodePredDataset and add tests for DGLCSVDataset * fix * remove add_self_loop * refine
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- 07 Feb, 2022 1 commit
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nv-dlasalle authored
* Add unit test * Fix typo Co-authored-by:Jinjing Zhou <VoVAllen@users.noreply.github.com>
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- 30 Jan, 2022 2 commits
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Quan (Andy) Gan authored
* initial update * more * more * multi-gpu example * cluster gcn, finalize homogeneous * more explanation * fix * bunch of fixes * fix * RGAT example and more fixes * shadow-gnn sampler and some changes in unit test * fix * wth * more fixes * remove shadow+node/edge dataloader tests for possible ux changes * lints * add legacy dataloading import just in case * fix * update pylint for f-strings * fix * lint * lint * lint again * cherry-picking commit fa9f494 * oops * fix * add sample_neighbors in dist_graph * fix * lint * fix * fix * fix * fix tutorial * fix * fix * fix * fix warning * remove debug * add get_foo_storage apis * lint
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Minjie Wang authored
* add ut * add doc link * install dep * fix ci * fix ut; more comments * remove deprecated attributes in rdf datasets; fix label feature name * address comments * fix ut for other frameworks
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- 29 Jan, 2022 1 commit
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Mufei Li authored
* Update * Update * Update
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- 25 Jan, 2022 1 commit
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Mufei Li authored
* Update * Update * Fix * Update * Update * Update * Update * Fix * Update * Update * Update * Update * Fix lint * lint * Update * Update * lint fix * Fix CI * Fix * Fix CI * Update * Fix * Update * Update * Augmentation (#10) * Update * PPR * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * Update * CI * lint * lint * Update * Update * Fix AddEdge * try import * Update * Fix * CI Co-authored-by:
Ubuntu <ubuntu@ip-172-31-31-136.us-west-2.compute.internal> Co-authored-by:
Minjie Wang <wmjlyjemaine@gmail.com>
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