GitLab

* unsupervised graphsage first commit

* fix

* disable remove_edges and still got 0.90 performance

* optimize edgeids with multimap

* change hyperparams

* update README
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* [BUG] Fix #1409

* fix test

* Deprecate multi-graph

* Handle heterograph and edge_ids

* lint

* Fix

* Remove multigraph in C++ end

* Fix lint

* Add some test and fix something

* Fix

* Fix

* upd

* Fix some test case

* Fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* [Feature] Casting between DGLGraph and DGLHeteroGraph

* lint

* address comments
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* remove edge and to bipartite and graphsage with sampling

* fixes

* fixes

* fixes

* reenable multigpu training

* fixes

* compatibility in DGLGraph

* rename to compact_as_bipartite

* bugfix

* lint

* add offline inference

* skip GPU tests

* fix

* addresses comments

* fix

* fix

* fix

* more tests

* more docs and unit tests

* workaround for empty slice on empty data

* fix script

* t

* fix weird bugs

* fix

* fix

* upload

* fix

* fix

* lint

* fix

* tmp

* fix serialization

* fix

* fix lint

* fix message

* fix

* lint

* address comment

* fix

* lint

* fix

* fix

* fix

* Remove duplicate serialization for meta graph
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* improve performance of sample_neighbors

* some more improve

* test script

* benchmarks

* multi process

* update more tests

* WIP

* adding two API for state saving

* add create from state

* upd test

* missing file

* wip: pickle/unpickle

* more c apis

* find the problem of empty data array

* add null array; pickling speed is bad

* still bad perf

* still bad perf

* wip

* fix the pickle speed test; now everything looks good

* minor fix

* bugfix

* some lint fix

* address comments

* more fix

* fix lint

* add utest for random.choice

* add utest for dgl.rand_graph

* fix cpp utests

* try fix ci

* fix bug in TF backend

* upd choice docstring

* address comments

* upd

* try fix compile

* add comment

* WIP: working on random choices

* light slice

* basic CPU impl

* add python binding; fix CreateFromCOO and CreateFromCSR returning unitgraph

* simple test case works

* fix bug in slicing probability array

* fix bug in getting the correct relation graph

* fix bug in creating placeholder graph

* enable omp

* add cpp test

* sample topk

* add in|out_subgraph

* try fix lint; passed all unittests

* fix lint

* fix msvc compile; add sorted flag and constructors

* fix msvc

* coosort

* COOSort; CSRRowWiseSampling; CSRRowWiseTopk

* WIP: remove DType in CSR and COO; Restrict data array to be IdArray

* fix all CSR ops for missing data array

* compiled

* passed tests

* lint

* test sampling out edge

* test different per-relation fanout/k values

* fix bug in random choice

* finished cpptest

* fix compile

* Add induced edges

* add check

* fixed bug in sampling on hypersparse graph; add tests

* add ascending flag

* in|out_subgraph returns subgraph and induced eid

* address comments

* lint

* fix

* graph format

* fix lint

* lint

* fix

* unit test

* lint

* add magic num

* move serialize out of struct

* lint

* serialize

* trigger CI

* fix lint

* lint
Co-authored-by: zhoujinjing09 <zhoujinjing09@users.noreply.github.com>

* graph format

* fix lint

* lint

* fix

* unit test

* lint

* add magic num

* move serialize out of struct

* lint
Co-authored-by: zhoujinjing09 <zhoujinjing09@users.noreply.github.com>

* unit graph that prefers coo queries

* auto detect coo preference

* forgot some functions

* disable lint on detect_prefer_coo

* reorg

* change comment

* lint

* fix

* move array_utils.h to src

* compact graph impl

* fix redundant copying in idhashmap

* docstring

* moving preference detection to C

* lint

* fix unit test & address comments

* hypersparse autorestrict

* docstring & fix

* revert copyto and asnumbits

* fix stupid bug

* lint

* leave a TODO for sorted COO

* fixing same node type mapping to different id in different graphs

* addresses comments

* made induced nodes a feautre column

* lint?

* trying to refactor IndexSelect

* partial implementation

* add index select and assign for floats as well

* move to random choice source

* more updates

* fixes

* fixes

* more fixes

* adding python impl

* fixes

* unit test

* lint

* lint x2

* lint x3

* update metapath2vec

* debugging performance

* still debugging for performance

* tuning

* switching to succvec

* redo

* revert non-uniform sampler to use vector

* still not fast

* why does this crash with OpenMP???

* because there was a data race!!!

* add documentations and remove assign op

* lint

* lint x2

* lol what have i done

* lint x3

* fix and disable gpu testing

* bugfix

* generic random walk

* reorg the random walk source code

* Update randomwalks.h

* Update randomwalks_cpu.cc

* rename file

* move internal function to anonymous ns

* reorg & docstrings

* constant restart probability

* docstring fix

* more commit

* random walk with restart, tested

* some fixes

* switch to using NDArray for choice

* massive fix & docstring

* lint x?

* lint x??

* fix

* export symbols

* skip gpu test

* addresses comments

* replaces another VecToIdArray

* add randomwalks.h to include

* replace void * with template

* sort

* sort in parallel.

* fix a bug in sorting adj

* rename.

* add more comments.

* accelerate GetData

* fix tests.

* avoid sorting multiple times.

* add test.

* change back.

* sort.

* add sort_csr.

* Fix a bug.

* fix.

* revert modifcation.

* rename

* speed up EdgeIds.

* fix to_hetero when metagraph is given

* minor fix

* add more check

* WIP. remove graph arg in NodeBatch and EdgeBatch

* refactor: use graph adapter for scheduler

* WIP: recv

* draft impl

* stuck at bipartite

* bipartite->unitgraph; support dsttype == srctype

* pass test_query

* pass test_query

* pass test_view

* test apply

* pass udf message passing tests

* pass quan's test using builtins

* WIP: wildcard slicing

* new construct methods

* broken

* good

* add stack cross reducer

* fix bug; fix mx

* fix bug in csrmm2 when the CSR is not square

* lint

* removed FlattenedHeteroGraph class

* WIP

* prop nodes, prop edges, filter nodes/edges

* add DGLGraph tests to heterograph. Fix several bugs

* finish nx<->hetero graph conversion

* create bipartite from nx

* more spec on hetero/homo conversion

* silly fixes

* check node and edge types

* repr

* to api

* adj APIs

* inc

* fix some lints and bugs

* fix some lints

* hetero/homo conversion

* fix flatten test

* more spec in hetero_from_homo and test

* flatten using concat names

* WIP: creators

* rewrite hetero_from_homo in a more efficient way

* remove useless variables

* fix lint

* subgraphs and typed subgraphs

* lint & removed heterosubgraph class

* lint x2

* disable heterograph mutation test

* docstring update

* add edge id for nx graph test

* fix mx unittests

* fix bug

* try fix

* fix unittest when cross_reducer is stack

* fix ci

* fix nx bipartite bug; docstring

* fix scipy creation bug

* lint

* fix bug when converting heterograph from homograph

* fix bug in hetero_from_homo about ntype order

* trailing white

* docstring fixes for add_foo and data views

* docstring for relation slice

* to_hetero and to_homo with feature support

* lint

* lint

* DGLGraph compatibility

* incidence matrix & docstring fixes

* example string fixes

* feature in hetero_from_relations

* deduplication of edge types in to_hetero

* fix lint

* fix

* moving heterograph index to another file

* node view

* python interfaces

* heterograph init

* bug fixes

* docstring for readonly

* more docstring

* unit tests & lint

* oops

* oops x2

* removed node/edge addition

* addressed comments

* lint

* rw on frames with one node/edge type

* homograph with underlying heterograph demo

* view is not necessary

* bugfix

* replace

* scheduler, builtins not working yet

* moving bipartite.h to header

* moving back bipartite to bipartite.h

* oops

* asbits and copyto for bipartite

* tested update_all and send_and_recv

* lightweight node & edge type retrieval

* oops

* sorry

* removing obsolete code

* oops

* lint

* various bug fixes & more tests

* UDF tests

* multiple type number_of_nodes and number_of_edges

* docstring fixes

* more tests

* going for dict in initialization

* lint

* updated api as per discussions

* lint

* bug

* bugfix

* moving back bipartite impl to cc

* note on views

* fix

* finish bipartite graph implementation; compiled

* finished heterograph implementation; compiled

* WIP: apis

* C API codes

* compiled

* WIP: python

* HeteroGraphIndex

* WIP: test

* add DGLContext support in ffi

* fix bug in has edge

* unittests except edge subgraph

* edge subgraph

* fix lint

* address comments

* poke ci

* try fix

* fix msvc