Commits · dd4c74ff32d6f7ca18169d8ad42f3824879302c6 · OpenDAS / dgl

"git@developer.sourcefind.cn:OpenDAS/dgl.git" did not exist on "643a42fe5ef44dfcd3bf87b0303f6d5ed1d9958b"

03 Apr, 2023 1 commit
- [Dataset] CornellDataset and TexasDataset (#5513) · dd4c74ff
  Mufei Li authored Apr 03, 2023
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
```
  dd4c74ff
31 Mar, 2023 1 commit

Mufei Li authored Mar 31, 2023


Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

2b5921e7

28 Mar, 2023 1 commit

update (#5507) · 690f37bb

Mufei Li authored Mar 28, 2023


Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

690f37bb

23 Mar, 2023 1 commit

[Dataset] Chameleon (#5477) · 9e532e7d

Mufei Li authored Mar 23, 2023



* update

* update

* update

* lint

* update

* CI

* lint

* update doc

---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

9e532e7d

22 Mar, 2023 1 commit

[Dataset] Add ZINC Dataset (#5428) · 4534650f

ZhenyuLU_Heliodore authored Mar 22, 2023



* Update dgl.data.rst

* Add files via upload

* Add files via upload

* Add files via upload

* Update zinc.py

* Update dgl.data.rst

* Update test_data.py

* Add files via upload

* Update cluster.py

* Update pattern.py

* Update zinc.py

* Update zinc.py

* Update test_data.py

* lint

* fix

* fix path

* update test on label shape

---------
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

4534650f

09 Mar, 2023 1 commit

[Data] new functional for creating data splits in graph (#5418) · 54b4bd0a

Gleb Bazhenov authored Mar 09, 2023



* new functional for creating data splits in graph

* minor fix in data split implementation

* apply suggestions from code review
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* refactoring + unit tests

* fix test file name

* move imports to the top

* Revert "fix test file name"

This reverts commit 126323e38c8de6fdc73c826dccc9048aed8f9634.

* remove nccl submodule

* address linter issues

---------
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>

54b4bd0a

08 Mar, 2023 1 commit

[Dataset] Add PATTERN dataset (#5422) · 17829024

Guangyu Zhou authored Mar 08, 2023



* add PATTERN dataset

* fix bug

* fix bugs

* fix issues

* refine according to dongyu's comments

---------
Co-authored-by: BuptTab <gyzhou2000@gmail.com>
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

17829024

04 Mar, 2023 1 commit

[Model] Add `dgl.nn.CuGraphGATConv` model (#5168) · bfd411d0

Tingyu Wang authored Mar 04, 2023



* add CuGraphGATConv model

* lintrunner

* update model to reflect changes in make_mfg_csr(), move max_in_degree to forward()

* simplify pytest markers

* fall back to FG option for large fanout

* update error msg

* add feat_drop and activation options

* add residual option

* Update python/dgl/nn/pytorch/conv/cugraph_gatconv.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/conv/cugraph_gatconv.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* reset res_fc

---------
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

bfd411d0

03 Mar, 2023 1 commit

[Utils] Edge and LINKX homophily measure (#5382) · f00cd6ef

Mufei Li authored Mar 03, 2023



* Update

* lint

* lint

* r prefix

* CI

* lint

* skip TF

* Update

* edge homophily

* linkx homophily

* format

* skip TF

* fix test

* update

* lint

* lint

* review

* lint

* update

* lint

* update

* CI

---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

f00cd6ef

01 Mar, 2023 1 commit

[Dataset] Add CLUSTER dataset (#5389) · a53ecd22

Zhiteng Li authored Mar 01, 2023



* add CLUSTER dataset

* refine according to dongyu's comments

---------
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

a53ecd22

24 Feb, 2023 1 commit

[Utils] Node homophily measure (#5376) · fcf5ad5f

Mufei Li authored Feb 24, 2023



* Update

* lint

* lint

* r prefix

* CI

* lint

* skip TF

* Update

---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

fcf5ad5f

23 Feb, 2023 1 commit

[Model] Implemented SubgraphX Explainer for Homogeneous graph (#5315) · 45153fc0

Kunal Mukherjee authored Feb 22, 2023



* subgraphx commit

* nits

* newline eof added

* lint fix

* test script updated to use default values

* lint fix

* graphs that are used for test cases are updated to a small graph

* lint formatted

* test paramter adj to complete the test under 20s

* lint fixes

---------
Co-authored-by: kxm180046 <kxm180046@utdallas.edu>

45153fc0

22 Feb, 2023 1 commit

[Model] Add `dgl.nn.CuGraphSAGEConv` model (#5137) · bcf9923b

Tingyu Wang authored Feb 22, 2023



* add CuGraphSAGEConv model

* fix lint issues

* update model to reflect changes in make_mfg_csr(), move max_in_degree to forward()

* lintrunner

* allow reset_parameters()

* remove norm option, simplify test

* allow full graph fallback option, add example

* address comments

* address reviews

---------
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

bcf9923b

08 Feb, 2023 1 commit

[Transform] Add SVDPE Transform Module (#5121) · 5598503a

ZhenyuLU_Heliodore authored Feb 08, 2023

* add SVD positional encoding

* modify importing module

* Fixed certain problems

* Change the test unit to a nonsigular one

* Fixed typo and make accord with lintrunner

* added svd_pe into dgl.rst

* Modified dgl.rst

5598503a

20 Jan, 2023 2 commits
- [Doc] Fix a typo in dgl.dataloading.rst (#5211) · 94d3c6cb
  Augusto Berndt authored Jan 20, 2023
```
changing privimitive to primitive
```
  94d3c6cb
- update (#5215) · 17fad103
  Hongzhi (Steve), Chen authored Jan 20, 2023
```
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
```
  17fad103
19 Jan, 2023 1 commit

Update dgl.sparse rst. (#5201) · 050798e9

Hongzhi (Steve), Chen authored Jan 19, 2023



* dgl

* blabla
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

050798e9

13 Jan, 2023 3 commits
- [Sparse] Refactor matmul interface. (#5162) · b5c5c860
  czkkkkkk authored Jan 13, 2023
```
* [Sparse] Refactor matmul interface.

* Update
```
  b5c5c860
- [Sparse] Rename as_sparse to to_sparse, dense to to_dense. (#5170) · 9334421d
  Hongzhi (Steve), Chen authored Jan 13, 2023
```
* as_sp_to_sp

* dense

* revert_mock

* test

* revert
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
```
  9334421d
- [Doc] remove deprected Node/EdgeDataLoader (#5171) · 85bd0cde
  Rhett Ying authored Jan 13, 2023
  
  85bd0cde
11 Jan, 2023 4 commits

blabla (#5152) · f1ed5d6d

Hongzhi (Steve), Chen authored Jan 11, 2023


Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

f1ed5d6d

Polish (#5149) · 41b41809

Hongzhi (Steve), Chen authored Jan 11, 2023


Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

41b41809

[Sparse] Update doc string of element-wise ops for DiagMatrix and SparseMatrix. (#5136) · 1a33ee99
Hongzhi (Steve), Chen authored Jan 11, 2023
```
* doc

* minor

* black

* no-lint

* reorg
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
```
1a33ee99

[Sparse] Remove unnecessary API exposure. (#5135) · c5119480

Hongzhi (Steve), Chen authored Jan 11, 2023



* remove unnecessary exposure.

* remove_add_power

* remove_warning

* reorder
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

c5119480

06 Jan, 2023 2 commits

[API Deprecation]Deprecate contrib module (#5114) · 56ffb650
peizhou001 authored Jan 06, 2023

56ffb650

[Sparse] Remove SparseMatrix.indices and add device/dtype conversions (#5108) · c8bc5588

Mufei Li authored Jan 06, 2023



* Update

* Update

* Update

* lint

* lint

* Update

* CI

* Update diag_matrix.py

* Update sparse_matrix.py

* Update sparse_matrix.py
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>

c8bc5588

03 Jan, 2023 2 commits

[Sparse] Polish sparse matrix creation functions (#5093) · 9169fc35

Mufei Li authored Jan 03, 2023



* update

* Update

* Update

* Update

* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

9169fc35

[NN] Add SpatialEncoder and SpatialEncoder3d (#4991) · cd817a1a

ZhenyuLU_Heliodore authored Jan 03, 2023



* Add SpatialEncoder and SpatialEncoder3d

* Optimize the code execution efficiency

* Fixed certain problems according to Dongyu's suggestions.

* Fix an error about probability of division by zero in PathEcoder; Change certain designs in SpatialEncoder

* Fix a typo

* polish the docstring

* fix doc

* lint
Co-authored-by: Ubuntu <ubuntu@ip-172-31-14-146.ap-northeast-1.compute.internal>
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

cd817a1a

29 Dec, 2022 1 commit

[Sparse] Namespace migration and doc update (#5088) · 37bd0925

Mufei Li authored Dec 29, 2022



* update

* lint

* lint

* comments
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

37bd0925

07 Dec, 2022 2 commits

Add Graph Transformer Layer (Dense Computation) (#4959) · 279e2e8f

Zhiteng Li authored Dec 07, 2022



* Add GraphTransformerLayer (dense)

* beautify the python code with black

* refine according to mufei's comments

* fix AttributeError in unit test

* rename module as GraphormerLayer

* fix name issue
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

279e2e8f

[Doc] Add Labor Sampler documentation (#4986) · 84a12cf6
Muhammed Fatih BALIN authored Dec 06, 2022
```
Co-authored-by: Xin Yao <xiny@nvidia.com>
```
84a12cf6

05 Dec, 2022 1 commit

[NN] Add PathEncoder (#4956) · 93ecfa31

ZhenyuLU_Heliodore authored Dec 05, 2022



* Add PathEncoder to transformer.py

* add blank line at the and

* rename variabl sp to shortest_path

* Fixed corresponding problems

* Fixed certain bugs when running on CUDA

* changed clamp min from 0 to 1
Co-authored-by: Ubuntu <ubuntu@ip-172-31-14-146.ap-northeast-1.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

93ecfa31

01 Dec, 2022 1 commit
- [API Deprecation] Remove candidates in DGLGraph (#4946) · 61139302
  peizhou001 authored Dec 01, 2022
  
  61139302
20 Nov, 2022 1 commit

[NN] Add biased multi-head attention module (dense) (#4916) · 16eba6e8

Zhiteng Li authored Nov 20, 2022



* Add biased multi-head attention module (dense)

* fix lint issues

* refine according to dongyu's comments
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

16eba6e8

18 Nov, 2022 1 commit

[Model] Add `dgl.nn.CuGraphRelGraphConv` model (#4826) · 4ecd2c85

Tingyu Wang authored Nov 18, 2022



* added relgraphconv

* add tests for CuGraphRelGraphConv

* move test to tests directory

* update docs

* address PR review 1

* address PR review, continued

* remove stashing ctx.device

* make fanout optional

* fanout -> max_in_degree

* improve docstrings consistency

* initialize parameters directly in __init__

* get rid of shared memory size check

* improve docs

* format comments

* skip test case for regularizer=None
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>

4ecd2c85

16 Nov, 2022 1 commit

[Transform] Add ToLevi transform (#4884) · c235d17d

Zhiteng Li authored Nov 16, 2022



* add ToLevi transform

* fix parameter typo

* fix lint issues

* fix device issue

* refine according to dongyu's comments
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

c235d17d

15 Nov, 2022 1 commit
- Deprecate (#4864) · 3132da28
  peizhou001 authored Nov 15, 2022
```
rename DGLHeteroGraph to DGLGraph
```
  3132da28
06 Nov, 2022 1 commit

[Transform] Add shortest distance (#4799) · 1d229194

rudongyu authored Nov 06, 2022

* shortest dist

* update

* address issues

* update

* fix indent

* lint

* fix indent

1d229194

02 Nov, 2022 1 commit

[NN] Add DegreeEncoder for graph transformer (#4742) · 9d9280cb

ZhenyuLU_Heliodore authored Nov 02, 2022



* Add files via upload

This file will contain several utility modules for Graph Transformer. DegreeEncoder has been implemented in this file now.

* Update graph_transformer.py

* Update nn-pytorch.rst

Add graph_transformer.DegreeEncoder in Utility Modules

* Update test_nn.py

* Update __init__.py

* Update graph_transformer.py

* Update test_nn.py

* Update graph_transformer.py

fix unused import

* Update graph_transformer.py

add module doc-string

* Update graph_transformer.py

* Update graph_transformer.py
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

9d9280cb

01 Nov, 2022 1 commit

[Dist] Enable save and load for Distributed Optimizer (#4752) · 2caa6bd0

peizhou001 authored Nov 01, 2022



* add save/load for distributed  optimizer
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-19.ap-northeast-1.compute.internal>

2caa6bd0