Commits · dc8ca88e5885d9dce234847473acffefa84eeffe · OpenDAS / dgl

08 May, 2020 2 commits

[Refactor] Explicit dtype for HeteroGraph (#1467) · dc8ca88e

Jinjing Zhou authored May 08, 2020



* 111

* 111

* lint

* lint

* lint

* lint

* fix

* lint

* try

* fix

* lint

* lint

* test

* fix

* ttt

* test

* fix

* fix

* fix

* mxnet

* 111

* fix 64bits computation

* pylint

* roll back

* fix

* lint

* fix hetero_from_relations

* remove index_dtype in to_homo and to_hetero

* fix

* fix

* fix

* fix

* remove default

* fix

* lint

* fix

* fix error message

* fix error

* lint

* macro dispatch

* try

* lint

* remove nbits

* error message

* fix

* fix

* lint

* lint

* lint

* fix

* lint

* fix

* fix random walk

* lint

* lint

* fix

* fix

* fix

* lint

* fix

* lint
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

dc8ca88e

fix metapath2vec on custom datasets (#1499) · de34e15a
Quan (Andy) Gan authored May 08, 2020

de34e15a

06 May, 2020 2 commits

[Test] Add tests for TensorFlow (#1501) · 16561a2e

Da Zheng authored May 06, 2020



* add test.

* move test code.

* remvoe unnecessary test.

* fix.

* turn on tests for TF.

* Revert "move test code."

This reverts commit e7b4f36395b2121a7be030bd4364a704d0e357bf.

* fix.

* fix.

* skip test for tensorflow.
Co-authored-by: Chao Ma <mctt90@gmail.com>

16561a2e

[Model] GATNE-T (#1470) · 6ae440db

Linfang He authored May 06, 2020



* Add an example for GATNE-T

* Update README.md

* Add links for datasets

* Update README.md with running results

* Update README.md

* Add comments

* Update main.py

* Remove node type name `user`
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

6ae440db

03 May, 2020 1 commit

[Feature] Distributed graph store (#1383) · 2190c39d

Da Zheng authored May 02, 2020

* initial version from distributed training.

This is copied from multiprocessing training.

* modify for distributed training.

* it's runnable now.

* measure time in neighbor sampling.

* simplify neighbor sampling.

* fix a bug in distributed neighbor sampling.

* allow single-machine training.

* fix a bug.

* fix a bug.

* fix openmp.

* make some improvement.

* fix.

* add prepare in the sampler.

* prepare nodeflow async.

* fix a bug.

* get id.

* simplify the code.

* improve.

* fix partition.py

* fix the example.

* add more features.

* fix the example.

* allow one partition

* use distributed kvstore.

* do g2l map manually.

* fix commandline.

* a temp script to save reddit.

* fix pull_handler.

* add pytorch version.

* estimate the time for copying data.

* delete unused code.

* fix a bug.

* print id.

* fix a bug

* fix a bug

* fix a bug.

* remove redundent code....

2190c39d

02 May, 2020 2 commits

[KVStore] Fix bug of get_meta() API (#1491) · 5fc334fc

Chao Ma authored May 02, 2020

* fix get-shape

* update

* update

* update

* update

* update

* fix typo

* update

* update

5fc334fc

[Fix] Fix stream creation and empty dict in tensor serialization (#1489) · 30b8074a

Jinjing Zhou authored May 02, 2020

* add functions

* fix litn

* add unit test

* fix

* fix

* fix

* fix

* support empty dict

* simplify logic

* Update tensor_serialize.py

30b8074a

01 May, 2020 1 commit

[Hetero] Improve speed of several Hetero APIs (#1486) · f25bc176

Minjie Wang authored May 01, 2020

* add clone function to frame

* add utest

* replace all local_var with local_scope

* fix utest

* avoid creating canonical types in __getitem__

* lint

* try another utest  appraoch for mx

* utest

f25bc176

29 Apr, 2020 2 commits

[Bugfix] Add bool data type to backend. (#1487) · 3c4506e9
Minjie Wang authored Apr 29, 2020
```
* add bool to F.data_type_dict

* add utest

* skip bool test for mx
```
3c4506e9

Fix bug in using degree_as_nlabel for GIN dataset (#1451) · f1e4f378

Mohammad Amin Khashkhashi Moghaddam authored Apr 29, 2020



In order to make the `label2idx` dictionary, tensor values should be used and not the tensor itself.
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

f1e4f378

28 Apr, 2020 2 commits

[Model] Shared memory history tensor for multi-gpu training of control variate methods (#1479) · 05b0f1ea
Quan (Andy) Gan authored Apr 28, 2020
```
* shared memory history for multi-gpu training

* reorg
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
05b0f1ea

[Model] Unsupervised learning with GraphSAGE (#1440) · dc0432e7

Quan (Andy) Gan authored Apr 28, 2020



* unsupervised graphsage first commit

* fix

* disable remove_edges and still got 0.90 performance

* optimize edgeids with multimap

* change hyperparams

* update README
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

dc0432e7

27 Apr, 2020 3 commits

[Data] Add utils to save dict of tensors (#1481) · 1506560e
Jinjing Zhou authored Apr 28, 2020
```
* add functions

* fix litn

* add unit test

* fix

* fix
```
1506560e

[KVStore] Bug fix (#1480) · 100ddd06

Chao Ma authored Apr 28, 2020



* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* update

* Update network.cc
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

100ddd06

Fix (#1478) · aa17d78a
Jinjing Zhou authored Apr 27, 2020

aa17d78a

26 Apr, 2020 2 commits

[Model] GraphSAGE with control variate sampling on new sampler (#1355) · 97bb85d5

Quan (Andy) Gan authored Apr 26, 2020



* control variate first commit

* bug fixes

* split to single and multi GPU

* update readme

* bugfix

* bugfix

* remove push

* bugfix on multi gpu

* update README
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

97bb85d5

[KVStore] add init_data() on client (#1466) · 27520bc5

Chao Ma authored Apr 26, 2020

* add init_data on client

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* fix lint

* update

* update

* update

* update

* update

* update

27520bc5

24 Apr, 2020 1 commit
- Fix lr (#1457) · 0c0a8974
  xiang song(charlie.song) authored Apr 25, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-38-40.ec2.internal>
```
  0c0a8974
23 Apr, 2020 2 commits
- [kvstore] support any data type for init_data() (#1465) · 87b6997b
  Chao Ma authored Apr 23, 2020
```
* support any data type for init_data

* update

* update
```
  87b6997b
- [Bugfix] Fix corrupted memory when using multi-processing (#1453) · 6cd7c313
  Minjie Wang authored Apr 23, 2020
```
* fix

* fix mapping array for empty node set
```
  6cd7c313
20 Apr, 2020 1 commit

[KVstore] Improve user infterface (#1454) · 5efd1c4a

Chao Ma authored Apr 21, 2020

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

5efd1c4a

17 Apr, 2020 1 commit

[KVstore] Change sizeof(float) to dtype.bits / 8 (#1452) · 1abe87f5

Chao Ma authored Apr 17, 2020

* update

* update

* update

* update

* update

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* update

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* update

* update

* update

* fix lint

* update

* update

1abe87f5

16 Apr, 2020 1 commit

[KVstore] Fast-pull (#1446) · 338f24cf

Chao Ma authored Apr 16, 2020

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

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* update

* update

* update

* update

* fix lint

338f24cf

15 Apr, 2020 1 commit
- Update (#1447) · ad222fb9
  Mufei Li authored Apr 16, 2020
  
  ad222fb9
14 Apr, 2020 1 commit

[DGL-LifeSci] Weave for Molecular Property Prediction (#1441) · 011656fd

jjhu94 authored Apr 15, 2020



* featurize for weave model

* weave module for molecular graphs

* Update

* completed weave model

* update the whole weave model

* Update

* update atom (node) features

'

* "featurizer"

* Add files via upload

add edge featurizer

* Add files via upload

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update
Co-authored-by: mufeili <mufeili1996@gmail.com>

011656fd

13 Apr, 2020 1 commit

[Example] GCMC with sampling (#1296) · 28117cd9

xiang song(charlie.song) authored Apr 13, 2020



* gcmc example

* Update Readme

* Add multiprocess support

* Fix

* Multigpu + dataloader

* Delete some dead code

* Delete more

* upd

* Add README

* upd

* Upd

* combine full batch and sample GCMCLayer, use HeteroCov

* Fix

* Update Readme

* udp

* Fix typo

* Add cpu run

* some fix and docstring
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-71.ec2.internal>

28117cd9

09 Apr, 2020 5 commits
- [Bug] Fix khop graph (#1433) · bd1e48a5
  Mufei Li authored Apr 10, 2020
```
* Update

* Update

* Update
```
  bd1e48a5
- [Example] Update README of transformers for multi-gpu support (#1435) · 88c34487
  Mufei Li authored Apr 09, 2020
```
* Update README.md

* Update README.md
```
  88c34487
- deprecate DGL-KE. (#1432) · e317f715
  Da Zheng authored Apr 09, 2020
```
* deprecate DGL-KE.

* Update README.md

* remove from CI.

* remove tests.
Co-authored-by: Zheng <dzzhen@3c22fb0ed81b.ant.amazon.com>
```
  e317f715
- [Docs] Fix typos in env vars docs (#1429) · 8d20c249
  Adam J. Stewart authored Apr 08, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  8d20c249
- [Doc] Fix GraphConv math notation (#1430) · aefc080e
  Adam J. Stewart authored Apr 08, 2020
  
  aefc080e
08 Apr, 2020 1 commit

[Regression] Fix regression test (#1426) · 1b37545d

Jinjing Zhou authored Apr 08, 2020

* fix

* fix

* fix

* fix

* fix

* 111

* fix

* fix

* fix

* test

* ff

* fix

* ff

* fix

* f

* merge

* fix

1b37545d

06 Apr, 2020 2 commits
- backend selection (#1424) · 43d9f43a
  Quan (Andy) Gan authored Apr 06, 2020
  
  43d9f43a
- fix #1421 (#1422) · 91f7ff8e
  Quan (Andy) Gan authored Apr 06, 2020
  
  91f7ff8e
05 Apr, 2020 1 commit

[Feature] Simplify shared memory graph index (#1381) · 7c47d8c9

Da Zheng authored Apr 05, 2020



* simplify shared memory graph index.

* fix.

* remove edge_dir in SharedMemGraphStore.

* avoid creating shared-mem graph store with from_csr.

* simplify from_csr.

* add comments.

* fix lint.

* remove the test.

* fix compilation error.

* fix a bug.

* fix a bug.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal>

7c47d8c9

03 Apr, 2020 2 commits
- [Doc & Tutorial] Fix dgl.batch and GAT (#1418) · 1b152bf5
  Mufei Li authored Apr 04, 2020
```
* Update doc and tutorials

* Fix
```
  1b152bf5
- [BUG] Fix #1409 (#1411) · 24dc71fc
  Quan (Andy) Gan authored Apr 03, 2020
```
* [BUG] Fix #1409

* fix test
```
  24dc71fc
02 Apr, 2020 3 commits
- [DGL-LifeSci] Documentation (#1414) · d3560b71
  Mufei Li authored Apr 02, 2020
```
* Update

* Update

* Update
```
  d3560b71
- [Docs] Fix doc build doesn't work for nn.tensorflow and nn.mxnet (#1413) · 7e0893e6
  Jinjing Zhou authored Apr 02, 2020
```
* fix

* lint

* fix
```
  7e0893e6
- [README] New stuffs from 0.4.3 (#1412) · 31a636a1
  Minjie Wang authored Apr 02, 2020
  
  31a636a1