GitLab

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

* fix links and ref

* Hide implementations that may cause confusions to the user

* add papers

* fix number of classes in Amazon Cobuy datasets

* add two papers to Awesome paper list

* Update README.md

* add four papers

* add two papers

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Hide implementations that may cause confusions to the user

* fix number of classes in Amazon Cobuy datasets

* add four papers

* fix feature type of TU dataset

* fix readme

* remove commented codes
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* remove num_workers.

* remove num_workers.

* remove num_workers.

* remove num-servers.

* update error message.

* update docstring.

* fix docs.

* fix tests.

* fix test.

* fix.

* print messages in test.

* fix.

* fix test.

* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

Co-authored-by: Zihao Ye <expye@outlook.com>

* Update

* Add files via upload

* Add files via upload

* Add files via upload

Co-authored-by: Zihao Ye <expye@outlook.com>

Co-authored-by: messi-k <messi.k@kakaocorp.com>

* fix for zero degree nodes

* Update python/dgl/ops/spmm.py

linting fix
Co-authored-by: Zihao Ye <zihaoye.cs@gmail.com>
Co-authored-by: Konstantin Sofeikov <konstantin.sofeikov@complyadvantage.com>
Co-authored-by: Zihao Ye <expye@outlook.com>
Co-authored-by: Zihao Ye <zihaoye.cs@gmail.com>

* disable cpu fp16

* spell mistakes

* tf nn for edgeConv

* Auto stash before merge of "tf_working" and "origin/tf_working"

* clean up

* added test for edge_conv

* fix

* fix

* fix
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* test

* more stuff

* add test

* fixes

* optimize algo

* replace unordered_map with arrays

* lint

* lint x2

* oops

* disable gpu csrmm tests

* remove gpu invocation

* optimize with openmp

* remove python functions

* add back with docstrings

* lint

* lint

* update python interface

* functionize

* functionize

* lint

* lint

* Add hgat example

* Add experiment

* Clean code

* clear the code

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Change the code title and folder name

* Ready to merge

* Prepare for rebase and change message passing function

* use git ignore to handle empty file

* change file permission to resolve empty file

* Change permission

* change file mode

* Finish Coding

* working code cpu

* pyg compare

* Accelerate with batching

* FastMode Enabled

* update readme

* Update README.md

* refractor code

* Fix Bug

* add a simple temporal sampling method

* test results

* add train speed result

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* fix bug

* Fixed Grammar and Format Issue
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com>
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-4-63.ap-northeast-1.compute.internal>
Co-authored-by: WangXuhongCN <wangxuhongcn@163.com>
Co-authored-by: WangXuhongCN <34096632+WangXuhongCN@users.noreply.github.com>

* add random_start option for FPS

* change doc

* change from random_start to start_idx

* change error condition

* change error msg
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* [Example ]add mvgrl

* [Doc] add mvgrl to readme

* add more comments

* fix typos

* replace tab with space

* [doc] replace tab with space

* [Doc] fix a typo

* fix minor typos

* fix typos

* fix typos

* fix typos

* fix typos

* fix
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

Method `dataset.num_labels` has been deprecated and replaced by `dataset.num_classes`.  
Updating the method name to avoid runtime warning.
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

[Bugfix] Wrap cub with CUB_NS_PREFIX and remove dependency on Thrust to linking issues with Torch 1.8 (#2758)

* Wrap cub with prefixes and remove thrust

* Using counting iterator
Co-authored-by: Zihao Ye <expye@outlook.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* gnn-explainer

* gnn-explainer

* gnn-explainer

* gnn-explainer

* fix

* fix

* fix

* readme

* readme
Co-authored-by: zhjwy9343 <6593865@qq.com>

* [Bugfix] add default value for BlockSampler

* [Doc] modify user_guide description about MultiLayerDropoutSample
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* print error messages.

* fix.

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* upd

* lint

* upd

* upd

* compatibility

* upd

* upd
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* fix pickle problem

* lint

* add pickle tests

* fix

* fix

* fix

* fix

* fix for windows

The number of edges should be same as posive eids.
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Update

* Update

* Update

* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-15-8.us-west-2.compute.internal>

* Address bug where epochs exceed specified limit

* fix spacing

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Hide implementations that may cause confusions to the user

* fix number of classes in Amazon Cobuy datasets

* add four papers

* Update README.md

* Update README.md

* [example] arma

* update

* update

* update

* update

* update

* [example] dimenet

* [docs] update dimenet

* [docs] update tf results

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* finish graph matching gpu version

* use C++ shuffle

* finish graph matching

* fix bug

* fix bug

* change name and use swap

* upt

* fix format problem

* fix format problem

* stronger test

* upt

* upt

* change python api

* upt

* upt

* format check

* upt

* upt

* fix bug
Co-authored-by: Tong He <hetong007@gmail.com>

* change DiffPoolBatchedGraphLayer

* fix bug and add benchmark

* upt

* upt

* upt

* upt
Co-authored-by: Tong He <hetong007@gmail.com>

* Add implementation of unsupervised model

* [Doc] Update Implementor's information

* [doc] add index of infograph

* [Feature] QM9_v2 Dataset Support

* fix a typo

* move qm9dataset from data to examples

* Update qm9_v2.py

* Infograph -> InfoGraph

* add implementation and results of semi-supervised model

* Update README.md

* Update README.md

* fix a typo

* Remove the duplicated links.

* fix some typos

* fix typos

* update model.py

* update collate fn

* remove unused functions

* Update model.py

* add device option

* Update evaluate_embedding.py

* Update evaluate_embedding.py

* Update unsupervised.py

* Fix typos

* fix bugs

* Update README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [Feature] Support QM9Edge Datset

* Update qm9_edge.py

* disable tqdm

* Update qm9_edge.py

* Update qm9_edge.py

* Update qm9_edge.py

* Update qm9_edge.py

* Update qm9_edge.py

* Update qm9_edge.py

* Update qm9_edge.py

* remove preprocessing part

* add comparisons in qm9.py

* [docs] add qm9edge dataset
Co-authored-by: Mufei Li <mufeili1996@gmail.com>