GitLab

* fix cython bug

* fix

* fix

* update version

* update news

* refactor.

* accelerate update_all in nodeflow.

* fix.

* refactor.

* fix lint.

* fix lint.

* reorganize.

* reorg.

* remove.

* add doc.

* impl block_incidence_matrix

* fix lint.

* fix.

* simple fix.

* fix test.

* fix interface.

* fix eid.

* fix comments.

* enable cython

* add helper function and data structure for void_p vector return

* move sampler from graph index to contrib.sampling

* WIP

* WIP

* refactor layer sampling

* pass tests

* fix lint

* fix graphsage

* remove comments

* pickle test

* fix comments

* update dev guide for cython build

* use index_select instead of __getitem__

* fix bug in dataset processing

* fix edge_type shape bug

* comments

* migrate to node-flow

* uniform layer sampler test cases

* more test cases

* documentations

* fix lint errors

* fix lint errors

* fix lint errors

* iota

* add asnumpy

* requested changes

* fix indptr error

* fix lint errors

* requested changes & fix lint errors

* fix lint errors

* fix LayerSampler unit test

* implement pytorch spmm with gather and scatter add

* fix

* replace torch take with index_select

* comments

* comment about pytorch __getitem__ operator pitfall

* typo

* don't return aux_info.

* fix sampler test.

* fix sse.

* fix.

* add comment.

* neighbor sampling draft

* val/test acc

* control variate draft

* control variate

* update

* fix new_history

* maintain aggregated history while updating new history

* preprocess the first layer, change push to pull

* update

* fix subg_degree

* nodeflow

* clear

* readme

* doc and unittest for self loop

* address comments

* rename

* update

* fix

* Update node_flow.py

* Update node_flow.py

* fix rgcn tutorial

* small fix

* upd

* findedge/s

* upd

* upd

* upd

* upd

* add test

* remove redundancy

* upd

* upd

* upd

* upd

* add edge_subgraph

* explicit cast

* add test immutable subg

* reformat

* reformat

* fix bug

* upd

[Bugfix] Removing non-determinism in data loading

* refactor graph conv

* docs & tests

* fix lint

* fix lint

* fix lint

* fix lint script

* fix lint

* Update

* Style fix

* Fix style

* Fix style

* Fix gpu case

* Fix for gpu case

* Hotfix edgesoftmax docs

* Handle repeated features

* Add docstring

* Set default arguments

* Remove dropout from nn.conv

* Fix

* add util fn for renaming

* revert gcn_spmv.py

* mx folder

* fix wierd bug

* fix mx

* fix lint

* fix rgcn tutorial

* small fix

* add switch readonly state interface

* remove trailing ws

* fix

* fix

* change signature

* change signature

* remove trailing ws

* upd

* upd interface

* upd

* rm trailing ws

* reformat

* trailing space

* upd

* random walk traces generation

* remove outdated comments

* oops put in the wrong place

* explicit inline

* moving rand_r to util

* moving random walk to public function

* per-thread seed and openmp support

* type cast styles

* sample layer subgraphs.

* fix.

* fix.

* add layered subgraph.

* fix lint.

* fix.

* fix tutorial.

* fix.

* remove copy_to_parent.

* add num_layers

* move sampling code to sampler.cc

* fix.

* move subgraph construction out.

* Revert "move subgraph construction out."

This reverts commit 24b3d13b0d8ed5f91847ea75a7674ee8f7d45cff.

* change to NodeFlow.

* use NodeFlow in Python.

* use NodeFlowIndex.

* add node_mapping and edge_mapping.

* remove unnecessary code in SSE tutorial.

* Revert "remove unnecessary code in SSE tutorial."

This reverts commit 093f0413d5fa2e63ca5f80c46c80a126a9fb720c.

* fix tutorial.

* move to node_flow.

* update gcn cv updater.

* import NodeFlow.

* update.

* add demo code for vanilla control variate sampler.

* update.

* update.

* add neighbor sampling.

* return flow offsets.

* update node_flow.

* add test.

* fix sampler.

* fix graph index.

* fix a bug in sampler.

* fix map_to_layer_nid and map_to_flow_eid.

* fix apply_flow.

* remove model code.

* implement flow_compute.

* fix a bug.

* reverse the csr physically.

* add mini-batch test.

* add mini batch test.

* update flow_compute.

* add prop_flows

* run on specific nodes.

* test copy

* fix a bug in creating frame in NodeFlow.

* add init gcn_cv_updater.

* fix a minor bug.

* fix gcn_cv_updater.

* fix a bug.

* fix a bug in NodeFlow.

* use new h in gcn_cv_updater.

* add layer_in_degree and layer_out_degree.

* fix gcn_cv_updater for gpu.

* temp fix in NodeFlow for diff context.

* allow enabling/disabling copy back.

* add with-updater option.

* fix a bug in computing degree.

* add with-cv option.

* rename and add comments.

* fix lint complain.

* fix lint.

* avoid assert.

* remove assert.

* fix.

* fix.

* fix.

* fix.

* fix the methods in NodeFlow.

* fix lint.

* update SSE.

* remove gcn_cv_updater.

* correct comments for the schedulers.

* update comment.

* add map_to_nodeflow_nid

* address comment.

* remove duplicated test.

* fix int.

* fix comments.

* fix lint

* fix.

* replace subgraph with NodeFlow.

* move view.

* address comments.

* fix lint.

* fix lint.

* remove static_cast.

* fix docstring.

* fix comments.

* break SampleSubgraph.

* move neighbor sampling to sampler.cc

* fix comments.

* rename.

* split neighbor_list.

* address comments.

* fix.

* remove TODO.

* fixing bug in pickling readonly graphs

* multigraph test coverage

* fixing lint (??????)

* another lint

* is_readonly interface

* Create ppi.py

* Create train_ppi.py

* Update train_ppi.py

* Update train_ppi.py

* Create gat.py

* Update train.py

* Update train_ppi.py

* Update ppi.py

* Update train_ppi.py

* Update ppi.py

* Update train_ppi.py

* Update train_ppi.py

* Update ppi.py

* Update train_ppi.py

* update docs and readme

* reddit data loader

* upload to S3

* update

* add self loop

* address comments

* fi

* add rtfd

* rrr

* update

* change env

* temp fix

* update

* fix

* fix

* add

* conf

* Move file_pattern from Makefile to conf.py

* remove yml

* fix

* fix

* fix

* fix

* remove yml

* remove yml

* add doc docker

* add dgl install script

* change name

* change dockerfile

* fix

* name

* add

* fix

* fix

* fix

* fix

* fix docker

* delete sphinx.py for doc-build backend

* Add softmax to test backend

* Add group apply function and tests

* Delete unnecessary file

* Update comments and test

* Fix lint

* remove unused bucketing code

* group apply edge bucketing code

* gen degree bucket schedule for group apply edge

* schedule and graph code

* fix compiling

* fix

* fix lint

* naming

* harder test case

* fix comments

* more comments

* tweak function name

* batched_graph_classification

* Fix

* Fix

* update tutorial with new dataset

* Final

* Fix doc for dataset

* small fix

* minigc dataset

* more comments

* sphinx

* init.

* it's compiled.

* add immutable graph constructor.

* add immutable graph API.

* fix.

* impl get adjacency matrix.

* fix.

* fix graph_index from scipy matrix.

* add neighbor sampling.

* remap vertex ids.

* fix.

* move sampler test.

* fix tests.

* add comments

* remove mxnet-specific immutable graph.

* fix.

* fix lint.

* fix.

* try to fix windows compile error.

* fix.

* fix.

* add test.

* unify Graph and ImmutableGraph.

* fix bugs.

* fix compile.

* move immutable graph.

* fix.

* remove print.

* fix lint.

* fix

* fix lint.

* fix lint.

* fix test.

* fix comments.

* merge GraphIndex and ImmutableGraphIndex.

* temp fix.

* impl GetAdj.

* fix lint

* fix.

* fix.

* fix.

* fix.

* fix.

* use csr only for readonly graph.

* Revert "use csr only for readonly graph."

This reverts commit 8e24bb033af8504531b22849de5b7567b168e0d5.

* remove code.

* fix.

* fix.

* fix.

* fix.

* fix.

* fix.

* address comments.

* fix for comments.

* fix comments.

* revert.

* move test_graph_index to compute.

* fix.

* fix.

* impl GetAdj for coo.

* fix.

* fix tests.

* address comments.

* address comments.

* fix comment.

* address comments.

* use lambda.

* other comments.

* address comments.

* modify the semantics of edges.

* fix order.

* use DGLIdIter

* fix.

* remove NotImplemented.

* revert some code.

* make program thread local

* doc string

* fix gat residual bug

* fix the residual addition; output heads; add some shape notations;

* minor

* fix the output head average

* add requests package in requirement

* two better GAT implementations

* update numbers

* use version switch for spmm

* add missing dropout and output heads

* Max readout and consecutive labeling

* Delete test_readout.py

* Delete test_basics.py

* Test case and fix

* Recover accidentally removed file

* Fix import order

* Fix test case

* Fix

* Fix

* Fix

* Fix

* Fix

* revert

* Fix

* Fix

* Fix

* minor spelling tweaks

* Update CONTRIBUTORS.md

* test basics

* batched graph & filter, mxnet filter fix

* frame and function; bugfix

* test graph adj and inc matrices

* fixing start = 0 for mxnet

* test index

* inplace update & line graph

* multi send recv

* more tests

* oops

* more tests

* removing old test files; readonly graphs for mxnet still kept

* modifying test scripts

* adding a placeholder for pytorch to reserve directory

* torch 0.4.1 compat fixes

* moving backend out of compute to avoid nose detection

* tests guide

* mx sparse-to-dense/sparse-to-numpy is buggy

* oops

* contribution guide for unit tests

* printing incmat

* printing dlpack

* small push

* typo

* fixing duplicate entries that causes undefined behavior

* move equal comparison to backend

* reverse a graph

* Reverse a graph

* Fix

* Revert "Fix"

This reverts commit 1728826b4f3a083b76dfc0fdecd2bbf943a971b2.

* Fix

* Fix

* Delete vcs.xml

* Delete Project_Default.xml

* Fix

* Fix

* Fix

* Remove outdated test

* Reorg transform and update reverse (#2)

* Reorg transform and update reverse

* Fix doc and test

* Update test

* Resolve conflict

* CI oriented fix

* Remove outdated import

* Fix import

* Fix import

* define __all__ for wildcard imports

* Fix import

* Address circular imports

* Fix

* Fix test case

* Fix

* Fix

* Remove unused import

* Fix

* Fix

* Fix

* fix lint for graph_index.py

* pylint for base.py

* pylint for batched_graph.py

* pylint for frame.py; simplify and fix bugs in frame when index is slice type

* pylint for graph.py

* pylint for immutable_graph_index.py

* pylint for init.py

* pylint for rest files in root package

* pylint for _ffi package

* pylint for function package

* pylint for runtime package

* pylint for runtime.ir package

* add pylint to ci

* fix mx tests

* fix lint errors

* fix ci

* fix as requested

* fix lint

* fix bug: frame append should check itself

* more test case

* fix multi-send-recv bug

* remv msg graph and clean up

* test cases

* more test case

* fix for batchedgraph

* fix bugs: converting from a graph with edges

* fix

* add more operators to utils.Index

* clear frame executor

* change message indicator to a graph level index

* fix test cases

* guard the case that mxnet does not support concat zero shape tensor

* fix bug: avoid convert full slice to numpy

* test multi-send-recv after conversion

* fix as request (partially)

* add dtype, ctx to full_1d

* add slice data to utils.Index

* fix

* more doc string

* fix as requested

* WIP

* temp fix mx traversal memory crash bug

* add cache to adj and incmat

* Fix bug in cached adj/inc

* mx gcn spmv runnable; acc debugging...

* fix bug in mx gcn that loss is not correctly calculated

* fix mx utest

* fix as requested

* use raw parameter tensors rather than dense layer

* fix dropout

* Add numbers in readme