Commits · cd2cf606db954b0ce775833bacdb2994608fc7c1 · OpenDAS / dgl

"git@developer.sourcefind.cn:OpenDAS/nerfacc.git" did not exist on "17e28de798dca5d2e2761ff8d514b8b4df26ef6f"

10 Aug, 2021 1 commit
- [Bugfix] Fix bug introduced by https://github.com/dmlc/dgl/pull/3131 (#3234) · cd2cf606
  xiang song(charlie.song) authored Aug 10, 2021
```
* Fix bug

* Fix

* Fix

* upd

* trigger
```
  cd2cf606
06 Aug, 2021 3 commits
- [Bugfix] Distributed training can not work with dgl.dataloading.negative_sampler (#3215) · bcf92f6c
  xiang song(charlie.song) authored Aug 06, 2021
```
* Fix dist negative data loader bug

* upd

* Fix
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
```
  bcf92f6c
- [Fix] FIx check for num_workers for using ScalarDataBatcher (#3219) · 4d9beb3b
  nv-dlasalle authored Aug 06, 2021
```
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
```
  4d9beb3b
- Update citation_graph.py (#3221) · 8c2f8ff8
  Mufei Li authored Aug 06, 2021
  
  8c2f8ff8
05 Aug, 2021 1 commit

[feature] add count_nonzero function for DistTensor (#3203) · 45858d68

freeliuzc authored Aug 06, 2021



* add count_nonzero function for DistTensor

* change the load method of local data
Co-authored-by: liuzichang04 <liuzichang04@meituan.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

45858d68

03 Aug, 2021 1 commit
- [bugfix] Fix force_reload parameter of FraudDataset (#3210) · 4ae13bd2
  Yuchen authored Aug 03, 2021
```
* enable force_reload of FraudDataset

* rewrite hash_key in FraudDataset
```
  4ae13bd2
02 Aug, 2021 4 commits

[Doc] Add an official documentation of UnifiedTensor (#3194) · b78acd67

David Min authored Aug 02, 2021



* Add pytorch-direct version

* remove

* add documentation for UnifiedTensor

* Revert "add documentation for UnifiedTensor"

This reverts commit 63ba42644d4aba197c1cb4ea4b85fa1bc43b8849.

* add UnifiedTensor documentation

* Update python/dgl/contrib/unified_tensor.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: shhssdm <shhssdm@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

b78acd67

Bump nightly version (#3146) · 213e27f0
Quan (Andy) Gan authored Aug 02, 2021

213e27f0

[Doc] Fix random_walk documentation inconsistency (#3188) · 100eb57c

Quan (Andy) Gan authored Aug 02, 2021



* Update randomwalks.py

* Update randomwalks.py

FIx lint
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

100eb57c

Improve usage of pinned memory in sparse_optimizer (#3207) · 6001001f
nv-dlasalle authored Aug 01, 2021
```
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
```
6001001f

01 Aug, 2021 1 commit
- [Distributed] Fix distributed training hang with multiple samplers (#3169) · 8bc91414
  Jinjing Zhou authored Aug 01, 2021
```
Rewrite the multiprocessing worker pool
```
  8bc91414
29 Jul, 2021 2 commits
- [Model] add model example CARE-GNN (#3187) · a107993f
  Kay Liu authored Jul 29, 2021
```
* [Model] add model example CARE-GNN

* update README

* improvements based on the review feedback

* fix missing item()
Co-authored-by: zhjwy9343 <6593865@qq.com>
```
  a107993f
- [bugfix] fix default ntypes/etypes consistency between dgl.DGLGraph and dgl.graph (#3198) · c4791fd4
  Rhett Ying authored Jul 29, 2021
  
  c4791fd4
28 Jul, 2021 2 commits

[Distributed] Enable distributed EdgeDataLoader (#3192) · cb4a83a2

Da Zheng authored Jul 28, 2021



* make heterogeneous find_edges

* add distributed EdgeDataLoader.

* fix.

* fix a bug.

* fix bugs.

* add tests on distributed heterogeneous graph sampling.

* fix.
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>

cb4a83a2

[New Feature] Per edge type sampler for to_homogeneous graphs. (#3131) · ba7e7cf9

xiang song(charlie.song) authored Jul 28, 2021



* fix.

* fix.

* fix.

* fix.

* Fix test

* Deprecate old DistEmbedding impl, use synchronized embedding impl

* Basic imple of heterogeneous on homogenenous sampling

* make pass

* Pass C++ test

* Add python test code

* lint

* lint

* Add MultiLayerEtypeNeighborSampler

* Add unitest for single machine dataloader

* Add dist dataloader test for edge type sampler

* Fix lint

* fix

* support for per etype sample

* Fix some bug and enable distributed training with per edge sample

* fix

* Now distributed training works

* turn off some mxnet

* turn off mxnet for some dist test

* fix

* upd

* upd according to the comments

* Fix

* Fix test and now distributed works.

* upd

* upd

* Fix

* Fix bug

* remove dead code.

* upd

* Fix

* upd

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

ba7e7cf9

27 Jul, 2021 1 commit
- Bug fix: change th to tf (#3182) · d70beba7
  Lu Lu authored Jul 27, 2021
```
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
```
  d70beba7
21 Jul, 2021 1 commit

[Dataset] Fix the edge numbers in the GNNBenchmarkDataset doc string (#3163) · bbb6d4ee

Xiangkun Hu authored Jul 21, 2021



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Hide implementations that may cause confusions to the user

* fix number of classes in Amazon Cobuy datasets

* add four papers

* Fix doc string

* fix readme

* fix readme
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

bbb6d4ee

17 Jul, 2021 1 commit

[Distributed] Distributed heterograph training (#3069) · 34426a98

Da Zheng authored Jul 17, 2021



* support hetero RGCN.

* fix.

* simplify code.

* sample_neighbors return heterograph directly.

* avoid using to_heterogeneous.

* compute canonical etypes in advance.

* fix tests.

* fix.

* fix distributed data loader for heterograph.

* use NodeDataLoader.

* fix bugs in partitioning on heterogeneous graphs.

* fix lint.

* fix tests.

* fix.

* fix.

* fix bugs.

* fix tests.

* fix.

* enable coo for distributed.

* fix.

* fix.

* fix.

* fix.

* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Zheng <dzzhen@3c22fba32af5.ant.amazon.com>

34426a98

16 Jul, 2021 1 commit

[Feature][Performance][GPU] Introducing UnifiedTensor for efficient zero-copy... · 905c0aa5

David Min authored Jul 17, 2021

[Feature][Performance][GPU] Introducing UnifiedTensor for efficient zero-copy host memory access from GPU (#3086)

* Add pytorch-direct version

* Initial commit of unified tensor

* Merge branch 'master' of https://github.com/davidmin7/dgl



* Remove unnecessary things

* Fix error message

* Fix/Add descriptions

* whitespace fix

* add unpin

* disable IndexSelectCPUFromGPU with no CUDA

* add a newline for unified_tensor.py

* Apply changes based on feedback

* add 'os' module

* skip unified tensor unit test for cpu only

* Update tests/pytorch/test_unified_tensor.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* reflect feedback
Co-authored-by: shhssdm <shhssdm@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

905c0aa5

15 Jul, 2021 3 commits

Optimize dist_graph/_split_even_to_part memory usage (#3132) · b379dbd6

Jingcheng Yu authored Jul 15, 2021


Co-authored-by: yujingcheng02 <yujingcheng02@meituan.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

b379dbd6

[Doc] refine metis part of dgl.reorder_graph() (#3136) · 5cdf7cfa
Rhett Ying authored Jul 15, 2021
```
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
```
5cdf7cfa

[Bug fix] Various fix from bug bash (#3133) · 3f6f6941

Mufei Li authored Jul 15, 2021



* Update

* Update

* Update dependencies

* Update

* Update

* Fix ogbn-products gat

* Update

* Update

* Reformat

* Fix typo in node2vec_random_walk

* Specify file encoding

* Working for 6.7

* Update

* Fix subgraph

* Fix doc for sample_neighbors_biased

* Fix hyperlink

* Add example for udf cross reducer

* Fix

* Add example for slice_batch

* Replace dgl.bipartite

* Fix GATConv

* Fix math rendering

* Fix doc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-22-156.us-west-2.compute.internal>

3f6f6941

14 Jul, 2021 1 commit
- [Doc] Fix CoraFull number of edges inconsistency in doc (#3139) · 066bef21
  Quan (Andy) Gan authored Jul 14, 2021
  
  066bef21
13 Jul, 2021 5 commits

[Distributed] Deprecate old DistEmbedding impl, use synchronized embedding impl (#3111) · d7390763

xiang song(charlie.song) authored Jul 14, 2021



* fix.

* fix.

* fix.

* fix.

* Fix test

* Deprecate old DistEmbedding impl, use synchronized embedding impl

* update doc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

d7390763

[Bug fix] Fix batch information with remove_nodes/edges applied (#3119) · f0fafa20

Mufei Li authored Jul 13, 2021



* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix lint

* Fix

* Update

* Fix test cases

* Fix

* add docstrings

* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

f0fafa20

add exclude self option for EdgeDataLoader (#3122) · 2e19ba80
Quan (Andy) Gan authored Jul 13, 2021
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
2e19ba80
[Feature] Add left normalizer for GCN (#3114) · b576e617
Quan (Andy) Gan authored Jul 13, 2021
```
* add left normalizer for gcn

* fix

* fixes and some bug stuff
```
b576e617
[Feature] apply dgl.reorder() onto several node classification datase… (#3102) · 186ef592
Rhett Ying authored Jul 13, 2021
```
* [Feature] apply dgl.reorder() onto several node classification datasets in DGL

* rebase on latest dgl.reorder_graph()
```
186ef592

12 Jul, 2021 3 commits

[Feature] enable edge reorder in dgl.reorder_graph() (#3113) · 175f53de

Rhett-Ying authored Jul 12, 2021

* [Feature] enable edge reorder in dgl.reorder_graph()

* refine doc string

* refine doc string for dgl.reorder_graph

* refine doc string further

175f53de

[BugFix] fix problems found in bug bash (#3116) · 0ce92a86

Kay Liu authored Jul 12, 2021



* fix breakline in fakenews.py

* fix inconsistent argument name

* modify incorrect example and deprecated graph type

* modify docstring and example in knn_graph

* fix incorrect node type
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

0ce92a86

Update documentation for remove_edges function (#3123) · c7449818
Wilfried L. Bounsi authored Jul 12, 2021
```
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
```
c7449818

09 Jul, 2021 1 commit

[Performance] Add a warning for ChebConv (#3099) · 5798ee8d

Quan (Andy) Gan authored Jul 09, 2021



* add a warning for chebconv

* fix and docstrings

* update bgnn

* fix
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

5798ee8d

08 Jul, 2021 1 commit
- [Build] fix various build problems (#3117) · 2f41fcd9
  Quan (Andy) Gan authored Jul 08, 2021
  
  2f41fcd9
07 Jul, 2021 3 commits

[BugFix] fix problems in data split (#3082) · bb89dee7

Kay Liu authored Jul 07, 2021



* [BugFix] fix problems in data split

* fix format problems in docstring

* modify statistics to fit in dgl nature
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: zhjwy9343 <6593865@qq.com>

bb89dee7

[BugFix] skip frames whose num_rows is zero in dgl.heterograph.combine_frames() (#3110) · 32d1f3ac
Rhett-Ying authored Jul 07, 2021
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
32d1f3ac
[Doc] Add documentation for DGLGraph.adj_sparse (#3096) · 751685a9
Quan (Andy) Gan authored Jul 07, 2021
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
751685a9

06 Jul, 2021 2 commits

[Feature] Add Heterograph support on Python for builtin unary msg functions... · 188152b8

Israt Nisa authored Jul 06, 2021


[Feature] Add Heterograph support on Python for builtin unary msg functions (copy_u, copy_e) (#2989)

* heterograph for binary func

* Added SDDMM support

* Added unittest

* added binary test cases

* unary mfuncs works

* Fixed lint err

* lint check and others

* link check

* fixed import *_hetero issue

* lint check

* replace torch with dgl backend

* lint cehck

* removed torch from test

* skip mxnet unittest

* skip gpu test

* Remove unused/duplicated code

* minor

* changed data structure of ndata and edata

* link check

* reorganized

* minor lint

* minor lint

* raise error for udf func

* lint check

* fix for CUDA 10.1

* add a note for future cross-type max/min reducing

* Add support CUDA < 11

* lint check

* tidied C code

* remove dummy GSDDMM_hetero backward implementation
Co-authored-by: Israt Nisa <nisisrat@amazon.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

188152b8

[Fix] Use logging to print warning message in socket creation (#3098) · 4556fab8
Jinjing Zhou authored Jul 06, 2021
```
* fix

* fix

* lint

* fix
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
```
4556fab8

05 Jul, 2021 2 commits

[Doc] Add docstring for missing APIs (#3088) · d3e4460b
Minjie Wang authored Jul 05, 2021
```
* add docstring for missing API; fix some docstring

* rename apis; address comments
```
d3e4460b

[Distributed] Fix a few bugs in distributed API (#3094) · 485c04cf

Da Zheng authored Jul 05, 2021



* fix.

* fix.

* fix.

* fix.

* Fix test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>

485c04cf