GitLab

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* Creating ParMETIS wrapper script to run parmetis using one script from user perspective

* Addressed all the CI comments from PR https://github.com/dmlc/dgl/pull/4529

* Addressing CI comments.

* Isort, and black changes.

* Replaced python with python3

* Replaced single quote with double quotes per suggestion.

* Removed print statement

* Addressing CI Commets.

* Addressing CI review comments.

* Addressing CI comments as per chime discussion with Rui

* CI Comments, Black and isort changes

* Align with code refactoring, black, isort and code review comments.

* Addressing CI review comments, and fixing merge issues with the master branch

* Updated with proper unit test skip decorator

* Added support for edge features.

* Added comments and removing unnecessary print statements.

* updated data_shuffle.py to remove compile error.

* Repaled python3 with python to match CI test framework.

* Removed unrelated files from the pull request.

* Isort changes.

* black changes on this file.

* Addressing CI review comments.

* Addressing CI comments.

* Removed duplicated and resolved merge conflict code.

* Addressing CI Comments from Rui.

* Addressing CI comments, and fixing merge issues.

* Addressing CI comments, code refactoring, isort and black

* bump version

* Update setup.py

* Update setup.py

* first commit

* add test

* fixes

* ah this is how you skip setup

* fix

* ugh

* address comments

* i like black

* replace with pow

* autosummary for attributes

* revert accidental push

* revert accidental push

* added example
Co-authored-by: Israt Nisa <nisisrat@amazon.com>

* [Sparse] Add SparseMatrix unittest and fix docstring problem

* Minor fix

* Update

* check permission

* rm future annonations

* Skip create_from_csr and create_from_csc tests because Pytorch 1.9.0 does not have torch.sparse_csr_tensor
Co-authored-by: Israt Nisa <nisisrat@amazon.com>

- Disable automatic issue closing
- Correct the labels to exempt.

* GAT example

* Complete GAT and Add README

* Update
Co-authored-by: Israt Nisa <nisisrat@amazon.com>
Co-authored-by: czkkkkkk <zekucai@gmail.com>

* Add Hetero RGCN example

* Remove HeteroGraphWrapper and move model to entity_classify.py

* Add README

* Add elementwise operators for diagonal matrix

* minor

* resolve ambiguity of ops

* lint check

* lint check

* lint check
Co-authored-by: Israt Nisa <nisisrat@amazon.com>

* metapath2vec package

* fix bugs --metapath2vec package

* add unittest and fix bugs

* fix pyling messages

* del init.py

* fix bugs

* modify metapath2vec and add deepwalk

* deepwalk module

* del metapath2vec files

* Update

* Update

* Update

* Update

* Update

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* sddmm init

* SDDMM with N-D nonzero values

* drop support for vector shaped non zero elements

* address comments

* skip cpu test

* skip GPU test too
Co-authored-by: Israt Nisa <nisisrat@amazon.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* [Dist] enable to partition many chunks into less partitions via pipeline

* refine

* add meta file for num_parts, add more tests, refine docstring

* remove args.num_parts

* create pydantic class for partition metadata

* refine

* rename json file

* [Dist] save original node/edge IDs into separate files

* separate nids and eids

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* Update

* lint

* Fix

* Update

* Update

* Update

* update

* Fix

* Update

* Fix

* Fix

* Fix

* CI

* Update

* Update

* Update

* update test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal>

* Fix mlp example

* Remove unused file

* fix test stream

* init cusparse handle

* auto fix

* add more

* sort
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* [Misc] Black auto fix.

* sort
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* [Misc] Black auto fix.

* sort
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

[Subgraph] State in the docstring that nodes cannot have any duplicate value when inducing a subgraph (#4637)

* [Sparse] Add reduction operators

* Fix linting problem

* Fix linting problem

* Fix linting problem

* Fix docstring

* Fix test cases

* Fix linting problem

* Skip reduction unittests

* Polish udf.py

* Update udf.py
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* initial commit

* address comments

* lint check
Co-authored-by: Israt Nisa <nisisrat@amazon.com>

 Garbage Collection and memory snapshot code for debugging partitioning pipeline (target as master branch) (#4598)

* Squashed commit of the following:

commit e605a550b3783dd5f24eb39b6873a2e0e79be9c7
Author: kylasa <kylasa@gmail.com>
Date:   Thu Sep 15 14:45:39 2022 -0700

    Delete pyproject.toml

commit f2db9e700d817212b67b5227f6472d218f0c74f2
Author: kylasa <kylasa@gmail.com>
Date:   Thu Sep 15 14:44:40 2022 -0700

    Changes suggested by isort program to sort imports.

commit 5a6078beac6218a4f1fb378c169f04dda7396425
Author: kylasa <kylasa@gmail.com>
Date:   Thu Sep 15 14:39:50 2022 -0700

    addressing code review comments from the CI process.

commit c8e92decb7aebeb32c7467108e16f058491443ab
Author: kylasa <kylasa@gmail.com>
Date:   Wed Sep 14 18:23:59 2022 -0700

    Corrected a typo in the import statement

commit 14ddb0e9b553d5be3ed2c50d82dee671e84ad8c9
Author: kylasa <kylasa@gmail.com>
Date:   Tue Sep 13 18:47:34 2022 -0700

    Memory snapshot code for debugging memory footprint of the graph partitioning pipeline

Squashed commit done

* Addressing code review comments.

* Update utils.py

* dummy change to trigger CI tests
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

* Refactor link pred example for graphsage

* Use ogb evaluator + README update

* Update

* Add comments

* [Sparse] Add Transposition

* Fix docstring

* Fix linting problem

* Minor fix

* Minor fix
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* get_more_logs

* Update cugraph_unit_test.sh

* Update test_basics.py

* Update cugraph_unit_test.sh

* Update tests/cugraph/test_basics.py
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* [CI] Enable DGL cugaph nightly CI

* fix build issue

* remove runtime

The example was updated in https://github.com/dmlc/dgl/pull/3972

 but the README file was not. This PR updates it to reflect the correct environment requirement.
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Use black for formatting

* limit line width to 80 characters.

* Use a backslash instead of directly concatenating

* file structure adjustment.

* file structure adjustment(2)
Co-authored-by: Mufei Li <mufeili1996@gmail.com>