GitLab

* Add row/col sorted flags

* improve sorting paths

* Remove print statement

* Keep track of sorted matrices

* Remove sort check in to_block

* Improve CPU sorted COO->CSR

* Handle the zero edge case

* Remove omp default clause to work with MSVC

* Update comments on sorted COO->CSR cpu implementatoin

* Expose sorted to python interface

* Make check_sorted default to false for dgl.graph()

* remove check sorted; add utests

* remove check_sorted flag
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* add

* fix

* f

* 111

* print

* fix

* ci

* f

* fix regex

* fix

* t

* fix

* add

* test

* fix

* fix

* fff

* fix

* 1113

* v2

* 222

* ttt2

* f2

* ff

* 11

* 121

* try

* add

* 222

* asd

* t2

* fix

* install dependency

* ff

* 图

* fix

* fix

* fix

* fix

* escape

* fix

* add url

* fix branches

* add url

* fix

* fix

* fix

* to csv

* update link

* fix

* fix

* fix

* Start on uniform GPU sampling

* Save more work

* Get cu file compiling

* Update sampling

* More changes

* Get GPU sampling for uniform probabilities solved

* Fix batch tensor migration

* Fix

* update kernels

* expand blocking

* Undo testing change

* Cut down on sampling overhead

* Fix replacement

* Update unit tests

* Add option to gpu sample in graphsage

* Copy only csc to gpu

* Add ogbn support

* Fix linting

* Remove nvtx from sample

* Improve documentation and error checking

* Expand documentation

* Update assert checking

* delete extra space

* Use standard dataloader when dataset is a dictionary

* ogb -> ogbn

* Fix edge selection determinism

* Fix typos

* Remove nvtx

* Add comment for self.fanout_arrays and assert

* Fix linting

* Migrate to scalarbatcher

* Fix indentation

* Fix batcher

* Fix indexing

* Only use databatcher for GPU

* Convert to DGL NDArray to PyTorch Tensor

* Add optimization for PyTorch's F.tensor() for list of GPU tensors
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* multi gpus training for mag240m

* remove unused function

* small changes

* more fix

* use multi gpus to eval and more fix
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* fix.

* test distributed graph without node/edge data.

* remove some tests.

* fix lint

* Add hgat example

* Add experiment

* Clean code

* clear the code

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Change the code title and folder name

* Ready to merge

* Prepare for rebase and change message passing function

* use git ignore to handle empty file

* change file permission to resolve empty file

* Change permission

* change file mode

* Finish Coding

* working code cpu

* pyg compare

* Accelerate with batching

* FastMode Enabled

* update readme

* Update README.md

* refractor code

* add graphsim code

* modified code

* few fix

* Modified graphsim

* Simple Model Added

* Clean up code

* Refractor the code for Merge

* Bugfix enable gradient when train

* update readme and format
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com>
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-4-63.ap-northeast-1.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-45-47.ap-northeast-1.compute.internal>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

int has no attribute of item
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* add submodule nanoflann

* finish python API for knn

* finish ndarray adaptor

* finish cpu-kdtree version of knn

* use openmp

* add endline

* upt

* upt

* fix format and code style

* upt

* add warning for gpu-cpu copy

* avoid contiguous copy
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Tong He <hetong007@gmail.com>

Co-authored-by: Da Zheng <zhengda1936@gmail.com>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-73-81.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* fix discrepancy

* address comments

* [example] jknet

* update

* update

* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Typo in command example. 

process_nowplaying_rs.py is the right name under this folder.

* Update README.md

* Update README.md
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Add BGNN example

* Update bgnn example

* Remove uncessary files

* update model index

* style fix

* Add Readme for BGNN example

* Update documentation; remove preprocessing
Co-authored-by: s.ivanov <s.ivanov@mesos-slave080-am6.central.criteo.prod>
Co-authored-by: s.ivanov <s.ivanov@mesos-slave150-am6.central.criteo.prod>
Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: s.ivanov <s.ivanov@mesos-slave148-am6.central.criteo.prod>
Co-authored-by: s.ivanov <s.ivanov@mesos-slave078-am6.central.criteo.prod>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* compgcn

* readme

* readme

* update

* readme
Co-authored-by: zhjwy9343 <6593865@qq.com>

* RGAT baseline

* update links (data.dgl.ai hasn't refreshed yet)

* nvm still use dgl.ai domain

* descriptions

* actually it took less

* address comments

* stop worrying about cache

* update links

* oops

* fix coo2csr speed

* add comments

* set omp thread.

* add comment.

* fix.

* [Example]Variational Graph Auto-Encoders

* change dgl dataset to single directional graph

* clean code

* refresh

* fix bug

* fix bug

* fix bug

* add gpu
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

* fix links and ref

* Hide implementations that may cause confusions to the user

* add papers

* fix number of classes in Amazon Cobuy datasets

* add two papers to Awesome paper list

* Update README.md

* add four papers

* add two papers

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Hide implementations that may cause confusions to the user

* fix number of classes in Amazon Cobuy datasets

* add four papers

* fix feature type of TU dataset

* fix readme

* remove commented codes
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* remove num_workers.

* remove num_workers.

* remove num_workers.

* remove num-servers.

* update error message.

* update docstring.

* fix docs.

* fix tests.

* fix test.

* fix.

* print messages in test.

* fix.

* fix test.

* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

Co-authored-by: Zihao Ye <expye@outlook.com>

* Update

* Add files via upload

* Add files via upload

* Add files via upload

Co-authored-by: Zihao Ye <expye@outlook.com>

Co-authored-by: messi-k <messi.k@kakaocorp.com>

* fix for zero degree nodes

* Update python/dgl/ops/spmm.py

linting fix
Co-authored-by: Zihao Ye <zihaoye.cs@gmail.com>
Co-authored-by: Konstantin Sofeikov <konstantin.sofeikov@complyadvantage.com>
Co-authored-by: Zihao Ye <expye@outlook.com>
Co-authored-by: Zihao Ye <zihaoye.cs@gmail.com>

* disable cpu fp16

* spell mistakes

* tf nn for edgeConv

* Auto stash before merge of "tf_working" and "origin/tf_working"

* clean up

* added test for edge_conv

* fix

* fix

* fix
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* test

* more stuff

* add test

* fixes

* optimize algo

* replace unordered_map with arrays

* lint

* lint x2

* oops

* disable gpu csrmm tests

* remove gpu invocation

* optimize with openmp

* remove python functions

* add back with docstrings

* lint

* lint

* update python interface

* functionize

* functionize

* lint

* lint

* Add hgat example

* Add experiment

* Clean code

* clear the code

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Change the code title and folder name

* Ready to merge

* Prepare for rebase and change message passing function

* use git ignore to handle empty file

* change file permission to resolve empty file

* Change permission

* change file mode

* Finish Coding

* working code cpu

* pyg compare

* Accelerate with batching

* FastMode Enabled

* update readme

* Update README.md

* refractor code

* Fix Bug

* add a simple temporal sampling method

* test results

* add train speed result

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* fix bug

* Fixed Grammar and Format Issue
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com>
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-4-63.ap-northeast-1.compute.internal>
Co-authored-by: WangXuhongCN <wangxuhongcn@163.com>
Co-authored-by: WangXuhongCN <34096632+WangXuhongCN@users.noreply.github.com>

* add random_start option for FPS

* change doc

* change from random_start to start_idx

* change error condition

* change error msg
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>