GitLab

* trying to refactor IndexSelect

* partial implementation

* add index select and assign for floats as well

* move to random choice source

* more updates

* fixes

* fixes

* more fixes

* adding python impl

* fixes

* unit test

* lint

* lint x2

* lint x3

* update metapath2vec

* debugging performance

* still debugging for performance

* tuning

* switching to succvec

* redo

* revert non-uniform sampler to use vector

* still not fast

* why does this crash with OpenMP???

* because there was a data race!!!

* add documentations and remove assign op

* lint

* lint x2

* lol what have i done

* lint x3

* fix and disable gpu testing

* bugfix

* generic random walk

* reorg the random walk source code

* Update randomwalks.h

* Update randomwalks_cpu.cc

* rename file

* move internal function to anonymous ns

* reorg & docstrings

* constant restart probability

* docstring fix

* more commit

* random walk with restart, tested

* some fixes

* switch to using NDArray for choice

* massive fix & docstring

* lint x?

* lint x??

* fix

* export symbols

* skip gpu test

* addresses comments

* replaces another VecToIdArray

* add randomwalks.h to include

* replace void * with template

* WIP

* header

* WIP .cc

* WIP

* transpose

* wip

* immutable graph .h and .cc

* WIP: nodeflow.cc

* compile

* remove all tmp dl managed ctx; they caused refcount issue

* one simple test

* WIP: testing

* test_graph

* fix graph index

* fix bug in sampler; pass pytorch utest

* WIP on mxnet

* fix lint

* fix mxnet unittest w/ unfortunate workaround

* fix msvc

* fix lint

* SliceRows and test_nodeflow

* resolve reviews

* resolve reviews

* try fix win ci

* try fix win ci

* poke win ci again

* poke

* lazy multigraph flag; stackoverflow error

* revert node subgraph test

* lazy object

* try fix win build

* try fix win build

* poke ci

* fix build script

* fix compile

* add a todo

* fix reviews

* fix compile

* accelerate gcn_ns.

* add timing.

* run infer with whole graph.

* distributed gcn_ns.

* reconstruct gcn_ns.

* minor fix.

* change graphsage_cv for numa.

* fix #OMP threads.

* accelerate graphsage_cv.

* fix a weird bug.

* add profiler in graphsage_cv.

* accelerate graphsage_cv.

manually aggregate neighbors' embeddings with pull.

* load csr directly in gcn_ns_sc.

* parallel sort for graph index.

* Revert "parallel sort for graph index."

This reverts commit 86fe2c7117fe5e56b0d481b39849c258b166945b.

* run gcn_ns_sc on GPUs.

* acc gcn_cv_sc.

* change gcn_cv for numa.

* fix gcn_cv to use numa and gpu.

* improve graphsage_cv to use numa and gpu.

* improve gcn_ns.

* improve graphsage_cv.

* init shared memory graph store.

* fix.

* enable init ndata.

* improve tests.

* add bidirectional communication.

* link to rt.

* fix compilation error.

* fix shared memory init.

* use MessageQueue for inter-process communication.

* reconstruct immutable graph csr.

* fix gcn.

* load csr to shared memory.

* fix minor bugs.

* add comments.

* refactor SharedMemory.

* fix bugs in ImmutableGraph.

* create CSR graph from shared memory.

* add more test for loading a csr graph.

* terminate graph store properly.

* allow initializing ndata in the graph store server.

* use RPC for inter-process communication.

* a script for loading a graph.

* allow customizing port.

* list all ndata and edata.

* support dtype.

* reorganize SharedMemoryGraphStore.

* fix ndata shape.

* reconstruct gcn_ns.

* print info.

* set omp in gcn_ns.

* reset sampling examples.

* fix lint.

* fix lint.

* reset gcn.

* disable shared memory in windows.

* fix.

* fix.

* reset changes.

* revert nodeflow changes.

* fix cmake.

* fix test.

* fix test.

* fix test.

* fix test.

* add comments.

* fix test.

* move vector out.

* fix lint.

* fix lint.

* move SharedMemory.

* update cmake.

* update comment.

* fix comments.

* Revert "update cmake."

This reverts commit 592445e37077f70a6e3f2e5245f9a3d086b04f3b.

* update cmake.

* add comments.

* rename.

* change the comment.

* fix a bug.

* rename.

* add comments.

* add comments.

* add init_edata.

* rewrite memory alloc.

* move vector to CSR.

* fix.

* init data.

* Revert "init data."

This reverts commit 2b217b9553911b7dd84a9f1d9b68430b5aa18e23.

* init data.

* init new columns correctly.

* include/dgl/runtime

* include

* src/runtime

* src/graph

* src/scheduler

* src

* clean up CMakeLists

* further clean up in cmake

* install commands

* python/dgl/_ffi/_cython

* python/dgl/_ffi/_ctypes

* python/dgl/_ffi

* python/dgl

* some fix

* copy right

* multigraph support on graph index

* more tests

* multigraph flag, bugfix on clear & copy

* networkx interfaces

* including graph index tests in Jenkins

* node subgraph test

* edge subgraphs

* removing duplicates in pred/succ

* more explicit test and doc

* query source and destination from edge id

* subgraphindex

* renaming has_edge to has_edge_between, apply_edges adding eid

* send_on and send_and_recv_on

* DGLGraph edge subgraph

* merged send_on and send_and_recv_on

* change request

* removing hashmap

* creating multigraph by flag; mingw support

* changes per request

* reverting networkx auto multigraph discovery

* notes on send/send_and_recv on multigraphs

* changing test reducer from sum to max

* added a fixme note in spmv scheduler