Commits · a5722d02a4fc0fcad765f0bdfd6d15578acbba07 · OpenDAS / dgl

15 Jul, 2020 1 commit

[Transform] New ToSimple API (#1789) · a5722d02

xiang song(charlie.song) authored Jul 15, 2020



* To simple

* lint

* upd

* more test

* fix

* Fix

* Fix

* add share edata

* doc

* Fix

* Fix

* Fix

* Fix

* lint

* lint

* Fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

a5722d02

14 Jul, 2020 2 commits
- [Distributed] Run distributed graph server inside DGL (#1801) · a1472bcf
  Da Zheng authored Jul 14, 2020
```
* run dist server in dgl.

* fix bugs.

* fix example.

* check environment variables and fix lint.

* fix lint
```
  a1472bcf
- relax (#1802) · be53add4
  Zihao Ye authored Jul 14, 2020
  
  be53add4
13 Jul, 2020 4 commits

[bugfix] Fix the deterministic of kernel test and add documentation. (#1799) · bc209bff
Zihao Ye authored Jul 14, 2020
```
* upd

* upd

* upd

* relax

* relax too

* upd
```
bc209bff

[Feature] Autograd of gspmm and gsddmm on PyTorch/MXNet/Tensorflow (#1680) · f25b1a06

Zihao Ye authored Jul 13, 2020

* init

* reverse(by minjie

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* gpu

* upd

* upd

* upd

* upd

* udp

* upd

* upd

* imidiot

* fix

* upd

* upd

* upd

* udp

* upd

* upd

* fix

* udp

* upd

* upd

* upd

* upd

* upd

* fix

* remove redundency

* upd

* upd

* upd

* cache

* upd

* upd

* upd

* upd

* upd

* udp

* upd

* trigger

* upd

* fix

* upd

* unused import

* upd

* upd

f25b1a06

fix batched heterograph serializations (#1794) · c13903bf
Quan (Andy) Gan authored Jul 13, 2020

c13903bf

[Transform] Reverse for heterogenous graph (#1784) · 200340ab

xiang song(charlie.song) authored Jul 13, 2020



* reverse

* Add more test

* Fix lint

* Fix

* move to transform

* upd

* upd

* upd

* Add more test

* lint

* Fix

* Fix doc

* Fix

* test

* doc

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

200340ab

12 Jul, 2020 1 commit
- Fix SAGEConv (#1792) · fb9d2138
  Mufei Li authored Jul 12, 2020
  
  fb9d2138
10 Jul, 2020 2 commits

[BugFix] Fix #1779 (#1781) · 8a183e3f

xiang song(charlie.song) authored Jul 10, 2020



* Fix bug #1779

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

8a183e3f

[Kernel] Line graph with new Kernel (#1744) · 33330fcb

xiang song(charlie.song) authored Jul 10, 2020



* line graph

* update docstring

* Add test and compile OK

* Add python API

* Fix linty

* Fix

* Fix

* upd

* upd

* Fix

* merge

* Fix

* fix

* upd

* lint

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

33330fcb

09 Jul, 2020 2 commits

[Kernel] Matrix Union (#1752) · 27cad329

xiang song(charlie.song) authored Jul 09, 2020



* Matrix union

* Pass test

* Fix lint

* return map for unionCOO/unionCSR

* Revert "return map for unionCOO/unionCSR"

This reverts commit 28e96c40f0659f02b33d88bcf528af6a6267726d.

* Update

* lint

* lint

* Fix doc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

27cad329

[Kernel] Matrix toSimple (#1756) · 29e6c93f

xiang song(charlie.song) authored Jul 09, 2020



* Matrix to simple

* Pass test

* new impl

* Fix test

* Fix lint

* trigger

* upd

* Fix comments
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

29e6c93f

08 Jul, 2020 1 commit

[Distributed] add in_subgraph on DistGraph. (#1755) · 167216af

Da Zheng authored Jul 08, 2020

* add in_subgraph on DistGraph.

* check in more.

* fix test.

* add comments.

* fix test.

* update test.

* update.

* rename.

* update comment

* fix test

167216af

07 Jul, 2020 1 commit
- [RPC] Client will retry connection until the server starts. (#1758) · bdc1e649
  Chao Ma authored Jul 07, 2020
```
* update

* update

* update
```
  bdc1e649
06 Jul, 2020 1 commit

[Distributed] fix init_data in kvstore. (#1750) · afb7f5b8

Da Zheng authored Jul 06, 2020



* fix

* fix.

* update.

* fix

* add assert
Co-authored-by: Chao Ma <mctt90@gmail.com>

afb7f5b8

05 Jul, 2020 1 commit

[Aten] Add nonzero op (#1746) · 9cd0d3f8

Jinjing Zhou authored Jul 05, 2020



* add nonzero op

* 111

* fix doc
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

9cd0d3f8

04 Jul, 2020 2 commits

[Bug Fix] Fix Heterogenous graph save crash when some edge type names are identical. (#1751) · cc73c60c

xiang song(charlie.song) authored Jul 04, 2020



* Fix hetero serialize

* Add test case
y
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

cc73c60c

[Kernel]GraphOp::Reverse (#1730) · feabcabd

xiang song(charlie.song) authored Jul 04, 2020



* Compile OK

* Fix compile

* Explore reverse to heterograph_indx and add python test code

* lint

* Fix some bug

* Fix bug

* upd

* Fix

* fix lint

* Fix

* Fix

* test

* triger

* Fix

* upd

* add TODO

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Zihao Ye <expye@outlook.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

feabcabd

03 Jul, 2020 2 commits

[Feature] add sparse embedding. (#1497) · cadcc1c2

Da Zheng authored Jul 03, 2020

* add sparse embedding.

* fix

* add test.

* man fixes.

* many fixes

* fix sparse emb.

* fix.

* fix lint.

* fix lint.

* fix kvstore.

* expose DistTensor.

* test sparse embeddings.

* add attach_grad to the backends.

* remove part_id

* fix.

* move backward computation.

* move more computation to backend.

* fix a bug when applying learning rate.

* fix a few things.

* fix a few things.

* add docstring

* fix.

* apply no_grad.

* fix tests.

* fix for other frameworks.

* add examples in docstring.

cadcc1c2

[Test] Fix test of distributed graph (#1748) · 17701174

Da Zheng authored Jul 03, 2020

* Revert "Serialize server and client start for dist_graph_store test (#1736)"

This reverts commit da16ebf0.

* sleep

17701174

02 Jul, 2020 4 commits

[Sampling] NodeDataLoader for node classification (#1635) · 168a88e5

Quan (Andy) Gan authored Jul 02, 2020



* neighbor sampler data loader first commit

* more commit

* nodedataloader

* fix

* update RGCN example

* update OGB

* fixes

* fix minibatch RGCN crashing with self loop

* reverting gatconv test code

* fix

* change to new solution that doesn't require tf dataloader

* fix

* lint

* fix

* fixes

* change doc

* fix docstring

* docstring fixes

* return seeds and input nodes from data loader

* fixes

* fix test

* fix windows build problem

* add pytorch wrapper

* fixes

* add pytorch wrapper

* add unit test

* add -1 support to sample_neighbors & fix docstrings

* docstring fix

* lint

* add minibatch rgcn evaluations
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Tong He <hetong007@gmail.com>

168a88e5

Serialize server and client start for dist_graph_store test (#1736) · da16ebf0
xiang song(charlie.song) authored Jul 02, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
da16ebf0
update (#1737) · 087992f1
Chao Ma authored Jul 02, 2020

087992f1

[KVStore] Test multi-server and multi-client (#1732) · 9eb0efcf

Chao Ma authored Jul 02, 2020

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

9eb0efcf

01 Jul, 2020 1 commit

[Distributed] Split data to ensure data locality for multiple clients (#1710) · 2c88f7c0

Da Zheng authored Jul 01, 2020

* fix.

* fix tests.

* fix

* add tests.

* fix.

* have default rank.

* add comment.

* fix test.

* remove check

* simplify code.

* add test.

* split data evenly.

* simplify the distributed training code.

* add comments.

* add comments.

2c88f7c0

30 Jun, 2020 1 commit

[Data] Support HeteroGraph save/load (#1526) · 18a26fcf

Jinjing Zhou authored Jun 30, 2020



* 111

* add history version test

* fix

* 111

* save

* ``

* fix1

* 111

* add save heterograph

* lint

* lint

* add tests

* minor fix

* fix

* docs

* add format tets

* use unique_ptr

* fix

* fix interface

* 111

* 111

* fix

* lint

* fix

* add support to s3

* fix

* fix

* fix leak

* fix

* fix docs

* fix

* linlt

* fix

* fix

* fix

* address comment

* address comment
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

18a26fcf

29 Jun, 2020 1 commit

[rpc] Add num_clients and sort client ID by machine-id (#1713) · dd8d5289

Chao Ma authored Jun 29, 2020



* add num_clients to kvstore

* update

* update

* update

* update

* update

* update

* update

* fix lint

* update

* update

* update

* add test

* update

* update

* update

* update

* fix test

* update

* update

* update

* update

* update

* update

* update
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

dd8d5289

28 Jun, 2020 7 commits

[DGLHeteroGraph] Add unittest for srcdst Order for DGLHeteroGraph.all_edges (#1677) · 0015eff7

Mufei Li authored Jun 29, 2020



* Fix (#1)

* Update

* Fix

* Fix

* Update

* Fix

* Fix

* Fix

* Fix

* Fixg

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Add test case

* Trigger CI (#2)

* Update

* Fix

* Fix

* Update

* Fix

* Fix

* Fix

* Fix

* Fixg

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Add test case

* test

* Fix (#3)

* Update

* Fix

* Fix

* Update

* Fix

* Fix

* Fix

* Fix

* Fixg

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Add test case

* test

* Fix

* Fix

* Roll back

* Roll back

* CI
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

0015eff7

[Kernel] Migrate batching/unbatching on adjlist to CSR/COO (#1687) · 5747542f

xiang song(charlie.song) authored Jun 28, 2020



* start

* coo csr union partition

* lint

* lint

* lint

* Add matrix->data transform

* update

* Fix window compile

* Add CSR support for DisjointPartition

* lint

* Fix

* Use IdArray Op

* Concat ready

* Fix and all pass

* resolve comments

* Add union COO C++ test

* Add C++ test for csr

* lint

* triger

* Update include

* Fix merge

* test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

5747542f

[Feature] dgl.subgraph support Bool mask tensor as index. (#1709) · 55072b4e

xiang song(charlie.song) authored Jun 28, 2020



* dgl.subgraph support using Bool mask tensor

* support numpy boo tensor and add some test

* Update

* Fix docstring
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

55072b4e

[CUDA][Kernel] More CUDA kernels; Standardize the behavior for sorted COO/CSR (#1704) · 870da747

Minjie Wang authored Jun 28, 2020

* add cub; array cumsum

* CSRSliceRows

* fix warning

* operator << for ndarray; CSRSliceRows

* add CSRIsSorted

* add csr_sort

* inplace coosort and outplace csrsort

* WIP: coo is sorted

* mv cuda_utils

* add AllTrue utility

* csr sort

* coo sort

* coo2csr for sorted coo arrays

* CSRToCOO from sorted

* pass tests for the new kernel changes

* cannot use inplace sort

* lint

* try fix msvc error

* Fix g.copy_to and g.asnumbits; ToBlock no longer uses CSC

* stash

* revert some hack

* revert some changes

* address comments

* fix

* fix to_block unittest

* add todo note

870da747

fix parallel msbuild (#1717) · da8632ca
Quan (Andy) Gan authored Jun 28, 2020

da8632ca
fix knn graph bugs (#1716) · 2f983abe
Quan (Andy) Gan authored Jun 28, 2020

2f983abe

[Distributed] add constraints for metis partitioning. (#1708) · 04d4680d

Da Zheng authored Jun 27, 2020

* add constraint.

* fix bugs.

* temp fix.

* fix lint

* add balance_ntypes and balance_edges

* add comments.

* fix.

* fix

04d4680d

27 Jun, 2020 1 commit

[Distributed] Optimize distributed sampling (#1700) · 45e1333e

Da Zheng authored Jun 26, 2020



* optimize sampling neighbors from the local partition.

* fix minior bugs.

* fix lint

* overlap local sampling and remote sampling.

* fix.

* fix lint.

* fix a potential bug.
Co-authored-by: Chao Ma <mctt90@gmail.com>

45e1333e

26 Jun, 2020 2 commits

[BUGFIX] Fix bugs in range partitioning. (#1703) · 4b96addc

Da Zheng authored Jun 26, 2020

* Fix bugs in partitioning.

* add comment.

* fix lint.

* fix test.

* add more tests.

* simplify the fix

* fix.

4b96addc

[Feature]heterograph.edata and heterograph.ndata support multiple ntype and etype (#1673) · b742c559

xiang song(charlie.song) authored Jun 26, 2020



* g.edata and g.ndata support multiple ntype and etype

* Add test case

* support g.srcdata and g.dstdata

* Fix test

* lint

* Fix

* Fix some comments

* lint
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

b742c559

24 Jun, 2020 2 commits

[BUGFIX] fix a bug in partition book. (#1698) · fa1478a4
Da Zheng authored Jun 24, 2020
```
* fix a bug.

* add msg for assert
```
fa1478a4

[NN] ChebConv update (#1460) · b6c4deb4

Axel Nilsson authored Jun 24, 2020



* New version for the convolutional layer

* Minor changes

* Minor changes

* Update python/dgl/nn/pytorch/conv/chebconv.py
Co-authored-by: Zihao Ye <zihaoye.cs@gmail.com>

* Resolved variable miss-naming, import simplifying and raising warning

* Added dg_warnings instead of warnings.warn

* add doc

* upd

* upd
Co-authored-by: Zihao Ye <zihaoye.cs@gmail.com>
Co-authored-by: yzh119 <expye@outlook.com>

b6c4deb4

23 Jun, 2020 1 commit
- Fix (#1684) · 86c243b4
  Mufei Li authored Jun 23, 2020
  
  86c243b4