Commits · a260a6e61585776f5819309a656c17f7fd146791 · OpenDAS / dgl

19 Aug, 2020 11 commits
- [Example] Fix GATNE-T (#2061) · a260a6e6
  Mufei Li authored Aug 19, 2020
```
* Update README.md

* Update

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal>
```
  a260a6e6
- [Frame] Fix for Column Index Device (#2055) · 3af0e91c
  Mufei Li authored Aug 19, 2020
```
* Update frame.py

* add unit test

* fix test

* fix

* fix

* fix
Co-authored-by: Quan Gan <coin2028@hotmail.com>
```
  3af0e91c
- deprecated some mxnet example (#2054) · 4c5136c8
  xiang song(charlie.song) authored Aug 19, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
  4c5136c8
- [Windows] Work around the bug from CL 19.10 (#2059) · 167536db
  Quan (Andy) Gan authored Aug 19, 2020
```
* [Windows] Work around the bug from CL 19.10

* fix
```
  167536db
- [BugFix] Fix a small bug on kvstore (#2058) · a4a7e02f
  Chao Ma authored Aug 19, 2020
```
* small fix

* update
```
  a4a7e02f
- Update (#2057) · 6e8f7605
  Mufei Li authored Aug 19, 2020
  
  6e8f7605
- remove debug information (#2056) · 75e89a15
  Quan (Andy) Gan authored Aug 19, 2020
  
  75e89a15
- [Distributed] Some small fixes on doc (#2049) · 9da1629c
  Da Zheng authored Aug 18, 2020
```
* quick fix.

* update sparse optimizer.

* fix.

* fix
```
  9da1629c
- Fix tree lstm (#2052) · 4edde000
  xiang song(charlie.song) authored Aug 19, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-129.ec2.internal>
```
  4edde000
- Update README.md (#1367) · c8a44c78
  Rajarshi Das authored Aug 18, 2020
```
updating readme to reflect argparse args
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
```
  c8a44c78
- Fix (#2051) · f3f35098
  xiang song(charlie.song) authored Aug 19, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-129.ec2.internal>
```
  f3f35098
18 Aug, 2020 13 commits

[Example] Rgcn distributed training (#1999) · 0052f121

xiang song(charlie.song) authored Aug 19, 2020



* add entity_classify_dist

* upd

* update

* Fix

* Fix

* upd

* upd

* upd

* upd

* global eval

* Fix

* Fix

* Fix

* Fix

* FIx

* upd

* upd

* update

* support pytorch sparse embedding

* Fix

* Fix

* update Readme

* update with new API

* Fix

* update Readme

* add fanout for validation neighbor sampling
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-24-210.ec2.internal>
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

0052f121

[Doc] Update the docstring of distributed APIs. (#2025) · 75ffc31f

Da Zheng authored Aug 18, 2020



* add doc.

* update DistGraph.

* add DistTensor.

* update DistEmbedding.

* add partition.py

* add sampling.

* fix.

* add graph partition book and create a base class.

* fix test.

* add rst.

* update doc rst.

* update.

* fix.

* fix docs

* update distributed tensor and embeddings.

* add checks.

* update DistGraph.

* update initialization.

* fix graph partition book.

* update graph partition book.

* update partition.

* update partition.

* fix.

* add example code.

* update DistGraph

* Update python/dgl/distributed/dist_context.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_context.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* update initialize.

* update dataloader.

* update distgraph.

* update DistGraph.

* update DistTensor.

* update.

* more updates.

* fix lint.

* add num_nodes and num_edges
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

75ffc31f

Fix mxnet gin (#2048) · 3d654843
xiang song(charlie.song) authored Aug 19, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
3d654843
[NN] [Doc] Fix nn api doc (#2047) · 65866989
Tianjun Xiao authored Aug 18, 2020
```
* fix mxnet nn doc and no note on chebconv

* change notes to note to highlight
```
65866989
[Convert] Reserve node/edge IDs in to_heterogeneous (#2045) · dacc7afe
Mufei Li authored Aug 18, 2020
```
* Fix

* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
```
dacc7afe
[Feature] Change the Default Value of transpose in DGLGraph.adj (#2046) · 9088c635
Mufei Li authored Aug 18, 2020
```
* Update adj

* Fix
```
9088c635
[Feature] Make sample_neighbors copy features on demand (#2042) · edfbee2c
Quan (Andy) Gan authored Aug 18, 2020
```
* fix

* fix

* lint

* fix

* test

* fix

* fix
```
edfbee2c

[Example] rm gcn spmv (#2044) · 09ec6020

xiang song(charlie.song) authored Aug 18, 2020



* rm gcn spmv

* remove useless test

* remove useless test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

09ec6020

upd (#2043) · 6d346281
Zihao Ye authored Aug 18, 2020

6d346281
remove kvstore example which is not maintianed and is out of date (#2041) · 1a1f38e3
xiang song(charlie.song) authored Aug 18, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
1a1f38e3
[Model] use dask to parallelize preprocessing (#2040) · 6367318f
Quan (Andy) Gan authored Aug 18, 2020

6367318f
[Test] Remove Test for metapath_random_walk (#2039) · 47c96dd1
Mufei Li authored Aug 18, 2020
```
* Update test_randomwalk.py

* Update test_randomwalk.py
```
47c96dd1

[Bugfix] Fix batching isolated node types (#2035) · aa19df1b

Quan (Andy) Gan authored Aug 18, 2020



* [Bugfix] Fix batching isolated ntypes

* fix test

* remove test.py
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

aa19df1b

17 Aug, 2020 11 commits

[Doc/Feature] Refactor, doc update and behavior fix for graphs (#1983) · be444e52

Mufei Li authored Aug 18, 2020



* Update graph

* Fix for dgl.graph

* from_scipy

* Replace canonical_etypes with relations

* from_networkx

* Update for hetero_from_relations

* Roll back the change of canonical_etypes to relations

* heterograph

* bipartite

* Update doc

* Fix lint

* Fix lint

* Fix test cases

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix test

* Fix

* Update

* Use DGLError

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* rewrite sanity checks

* delete unnecessary checks

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Update

* Fix

* Update

* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

be444e52

[NN] Add ChebConv for Tensorflow (#2038) · 0afc3cf8
Jinjing Zhou authored Aug 17, 2020
```
* add chebconv

* fix

* lint

* fix lint

* docs
```
0afc3cf8

[Bugfix] fix vocab not saved bug in SSTDataset (#2036) · b3538802

Xiangkun Hu authored Aug 17, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Update tree.py

b3538802

[Doc] split docs to multiple rst files (#2037) · 5cb57593
Minjie Wang authored Aug 17, 2020

5cb57593
disable batching blocks (#2034) · a8b27b47
Quan (Andy) Gan authored Aug 17, 2020

a8b27b47

[Doc] Move image in dataset User guide to s3 server (#2033) · a9c4df67

Xiangkun Hu authored Aug 17, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

a9c4df67

[Doc] API Doc update for mxnet and tf, remove some degree check (#2028) · b1e69105

Tianjun Xiao authored Aug 17, 2020

* mx tf relconv

* use method instead of private attr

* src and dst have different fc for gat

* update edgeconv

* change sage and sgconv

* no degree check on gin

* add remainding API doc

* fix pylint

* infer fc_src and fc_dst, only one tensor for block

* fix pytest

b1e69105

[Doc] fix inconsistencies in minibatch user guide (#2032) · 4f1da61b
Quan (Andy) Gan authored Aug 17, 2020

4f1da61b

[Fix] Update libinfo.py (#1830) · e291f503

max yue authored Aug 17, 2020



* Update libinfo.py

fix `if search_path is list` error, and improve the code.

* change string format for compatibility with py35

change string format

* Update libinfo.py

* Update libinfo.py
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

e291f503

[NN][Fix] fix some random test (#2031) · b8a4b446
Tianjun Xiao authored Aug 17, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
b8a4b446
[Doc] User guide section 5 and 6 (#2029) · 1f7b2195
Quan (Andy) Gan authored Aug 17, 2020
```
* [Doc] User guide section 5 and 6

* oops

* fix
```
1f7b2195

15 Aug, 2020 2 commits

only filling zeros for min/max reducer (#2026) · 2fc280ba
Zihao Ye authored Aug 15, 2020

2fc280ba

[Doc] Modify the link of save_graphs and load_graphs in dataset user guide (#2027) · 62e69b67

Xiangkun Hu authored Aug 15, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

62e69b67

14 Aug, 2020 3 commits

[WIP][Kernel] Set the built-in reduce result of zero-degree nodes to 0 in C (#2017) · 63e2ba23

Quan (Andy) Gan authored Aug 14, 2020



* test idea

* cuda kernels

* lint and fixes

* lint

* change to another strategy

* use infinity

* fix
Co-authored-by: Zihao Ye <expye@outlook.com>

63e2ba23

Update dgl.rst (#2020) · de2e608b
Jinjing Zhou authored Aug 14, 2020

de2e608b

[Doc] new nn api doc (#2019) · 2fa7f71a

zhjwy9343 authored Aug 14, 2020



* Add dotproduct attention

* [Feature] Add dotproduct attention

* [Feature] Add dotproduct attention

* [Feature] Add dotproduct attention

* [New] Update landing page

* [New] Update landing page

* [New] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Improvement] use dgl build-in in dotgatconv

* [Doc] review API doc string bottom up

* [Doc] Add doc of input and output features

* [Doc] Update doc string for pooling and transformer.

* [Doc] Reformat doc string and change some wordings.

* [Doc] Doc string refactoring.

* [Doc] Doc string refactoring.

* [Doc] Doc string refactoring.

* [Doc] Doc string refactoring.

* [Doc] Doc string refactoring.
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

2fa7f71a