GitLab

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* fix

* refactor

* upd test

* large feat_len or n in segment reduce

* lint

* add tvm as submodule

* compilation is ok but calling fails

* can call now

* pack multiple modules, change names

* upd

* upd

* upd

* fix cmake

* upd

* upd

* upd

* upd

* fix

* relative path

* upd

* upd

* upd

* singleton

* upd

* trigger

* fix

* upd

* count reducible

* upd

* upd

* upd

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* upd

* upd

* upd

* only keep related files

* upd

* upd

* upd

* upd

* lint

* lint

* lint

* lint

* pylint

* upd

* upd

* compilation

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd doc

* refactor

* fix

* upd number
Co-authored-by: Zhi Lin <linzhilynn@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-42-78.us-east-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-21-156.us-east-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* Remove double-checking sorted

* Remove sorting of CSR by default

* Update unit test to use unsorted matix

* delete whitespace

* Expand unit tests

* Replace cusparse sort

* Fix row column sorting

* Explicitly don't sort columns

* Fix linting errors

* Fix bit-width calculation

* Fix sorting assertion and unit test

* Fix linting

* Improve CPU COO2CSR

* Remove references

* Rename and add documentation to edge encoding/decoding funcionts

* Fix sorting keys as 64 bit

* Revert cosmetic changes to unit tests

* Update documentation

* Update complexity documentation for coo to csr conversion

* Remove COOIsSorted check in CPU implementation too

* upd

* upd

* upd

* upd

* fix

* upd

* upd
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* upd

* upd

* update

* upd

* upd

* upd

* fix

* lint

* lint

* pylint

* doc

* multiple fixes

* fix CI

* fiddle

* revert stubs

* upd

* upd

* unmerge

* unmerge
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* fix cumsum

* udp
Co-authored-by: Zihao <expye@outlook.com>

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* fix

* upd
Co-authored-by: VoVAllen <jz1749@nyu.edu>

* upd

* upd

* upd

* upd

* lint

* upd

* upd

* fmt
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* test idea

* cuda kernels

* lint and fixes

* lint

* change to another strategy

* use infinity

* fix
Co-authored-by: Zihao Ye <expye@outlook.com>

* up

* pylint

* upd

[bugfix] Fix the memory leak issue of Cluster GAT under 0.5 kernel and simplify the bipartite GAT. (#1908)

* uipd

* upd

* upd

* upd

* upd

* COO sort

* COOToCSR

* CSR2COO

* CSRSort; CSRTranspose

* pass all CSR tests

* lint

* remove int32 conversion

* fix tensorflow nn tests

* turn on CI

* fix

* addreess comments

* jtnn and fixes

* make metagraph a method

* fix test

* fix

* Merge

* [Graph][CUDA] Graph on GPU and many refactoring (#1791)

* change edge_ids behavior and C++ impl

* fix unittests; remove utils.Index in edge_id

* pass mx and th tests

* pass tf test

* add aten::Scatter_

* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix

* CSRGetData and CSRGetDataAndIndices passed tests

* CSRSliceMatrix basic tests

* fix bug in empty slice

* CUDA CSRHasDuplicate

* has_node; has_edge_between

* predecessors, successors

* deprecate send/recv; fix send_and_recv

* deprecate send/recv; fix send_and_recv

* in_edges; out_edges; all_edges; apply_edges

* in deg/out deg

* subgraph/edge_subgraph

* adj

* in_subgraph/out_subgraph

* sample neighbors

* set/get_n/e_repr

* wip: working on refactoring all idtypes

* pass ndata/edata tests on gpu

* fix

* stash

* workaround nonzero issue

* stash

* nx conversion

* test_hetero_basics except update routines

* test_update_routines

* test_hetero_basics for pytorch

* more fixes

* WIP: flatten graph

* wip: flatten

* test_flatten

* test_to_device

* fix bug in to_homo

* fix bug in CSRSliceMatrix

* pass subgraph test

* fix send_and_recv

* fix filter

* test_heterograph

* passed all pytorch tests

* fix mx unittest

* fix pytorch test_nn

* fix all unittests for PyTorch

* passed all mxnet tests

* lint

* fix tf nn test

* pass all tf tests

* lint

* lint

* change deprecation

* try fix compile

* lint

* update METIDS

* fix utest

* fix

* fix utests

* try debug

* revert

* small fix

* fix utests

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* trigger

* +1s

* [kernel] Use heterograph index instead of unitgraph index (#1813)

* upd

* upd

* upd

* fix

* upd

* upd

* upd

* upd

* upd

* trigger

* +1s

* [Graph] Mutation for Heterograph (#1818)

* mutation add_nodes and add_edges

* Add support for remove_edges, remove_nodes, add_selfloop, remove_selfloop

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* upd

* upd

* upd

* fix

* [Transfom] Mutable transform (#1833)

* add nodesy

* All three

* Fix

* lint

* Add some test case

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* fix

* triger

* Fix

* fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

* [Graph] Migrate Batch & Readout module to heterograph (#1836)

* dgl.batch

* unbatch

* fix to device

* reduce readout; segment reduce

* change batch_num_nodes|edges to function

* reduce readout/ softmax

* broadcast

* topk

* fix

* fix tf and mx

* fix some ci

* fix batch but unbatch differently

* new checkk

* upd

* upd

* upd

* idtype behavior; code reorg

* idtype behavior; code reorg

* wip: test_basics

* pass test_basics

* WIP: from nx/ to nx

* missing files

* upd

* pass test_basics:test_nx_conversion

* Fix test

* Fix inplace update

* WIP: fixing tests

* upd

* pass test_transform cpu

* pass gpu test_transform

* pass test_batched_graph

* GPU graph auto cast to int32

* missing file

* stash

* WIP: rgcn-hetero

* Fix two datasety

* upd

* weird

* Fix capsuley

* fuck you

* fuck matthias

* Fix dgmg

* fix bug in block degrees; pass rgcn-hetero

* rgcn

* gat and diffpool fix
also fix ppi and tu dataset

* Tree LSTM

* pointcloud

* rrn; wip: sgc

* resolve conflicts

* upd

* sgc and reddit dataset

* upd

* Fix deepwalk, gindt and gcn

* fix datasets and sign

* optimization

* optimization

* upd

* upd

* Fix GIN

* fix bug in add_nodes add_edges; tagcn

* adaptive sampling and gcmc

* upd

* upd

* fix geometric

* fix

* metapath2vec

* fix agnn

* fix pickling problem of block

* fix utests

* miss file

* linegraph

* upd

* upd

* upd

* graphsage

* stgcn_wave

* fix hgt

* on unittests

* Fix transformer

* Fix HAN

* passed pytorch unittests

* lint

* fix

* Fix cluster gcn

* cluster-gcn is ready

* on fixing block related codes

* 2nd order derivative

* Revert "2nd order derivative"

This reverts commit 523bf6c249bee61b51b1ad1babf42aad4167f206.

* passed torch utests again

* fix all mxnet unittests

* delete some useless tests

* pass all tf cpu tests

* disable

* disable distributed unittest

* fix

* fix

* lint

* fix

* fix

* fix script

* fix tutorial

* fix apply edges bug

* fix 2 basics

* fix tutorial
Co-authored-by: yzh119 <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-7-42.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-1-5.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>

* init

* reverse(by minjie

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* gpu

* upd

* upd

* upd

* upd

* udp

* upd

* upd

* imidiot

* fix

* upd

* upd

* upd

* udp

* upd

* upd

* fix

* udp

* upd

* upd

* upd

* upd

* upd

* fix

* remove redundency

* upd

* upd

* upd

* cache

* upd

* upd

* upd

* upd

* upd

* udp

* upd

* trigger

* upd

* fix

* upd

* unused import

* upd

* upd

* add cub; array cumsum

* CSRSliceRows

* fix warning

* operator << for ndarray; CSRSliceRows

* add CSRIsSorted

* add csr_sort

* inplace coosort and outplace csrsort

* WIP: coo is sorted

* mv cuda_utils

* add AllTrue utility

* csr sort

* coo sort

* coo2csr for sorted coo arrays

* CSRToCOO from sorted

* pass tests for the new kernel changes

* cannot use inplace sort

* lint

* try fix msvc error

* Fix g.copy_to and g.asnumbits; ToBlock no longer uses CSC

* stash

* revert some hack

* revert some changes

* address comments

* fix

* fix to_block unittest

* add todo note

* fix debug compilation

* fix

* revert

* udp

* simplify

* sddmm dot cpu

* upd

* format

* upd

* compatible with MJ's PR

* lint

* upd

* upd

* upd

* python end

* upd

* upd

* lint

* lint

* upd

* upd

* upd

* upd

* upd

* lint

* fix mxnet

* upd

* lint

* use minjie's ptr

* macro

* upd

* reorg

* lint

* fix corner cases

* upd

* enrich cpu docs

* upd

* upd

* lint

* lint

* pylint

* sx review

* improve docstring

* python doc

* upd

* restructure

* lint

* upd test

* upd

* pylint

* fix corner cases and test

* add cuda utils; change g.to; add g.device

* split array.h into several headers

* cuda index select

* file

* three cuda kernels

* add cuda elementwise arith and several others

* cuda CSRIsNonZero

* fix lint

* lint

* lint

* fix bug in changing ctx to property

* address comments

* remove unused codes

* address comments

* add cuda source

* moving codes from kernel2 branch

* operator overloading

* Better error message for unsupported device

* fix c tests

* coo sort using cusparse

* move test_rpc to distributed

* lint

* address comments and add utests
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>