Commits · 9779c02667ccd5169d02c9f82e24088a330fe6b1 · OpenDAS / dgl

04 Jun, 2020 1 commit
- Fix tutorial (#1587) · 9779c026
  Mufei Li authored Jun 04, 2020
  
  9779c026
03 Jun, 2020 2 commits

[Data] Retry downloading once if dataset initialization fails (#1520) · 2b9d06b6

Quan (Andy) Gan authored Jun 03, 2020



* dataloader guard

* more fixes

* sets overwrite to true by default

* Update utils.py

* fix
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

2b9d06b6

[Dataset] Change Cora Split (#1583) · 90d2118d
Mufei Li authored Jun 03, 2020
```
* Use new version of Cora

* Fix import
```
90d2118d

02 Jun, 2020 4 commits
- [DGL-LifeSci] Handle Same Labels for ROC AUC (#1581) · b8dffcd5
  Mufei Li authored Jun 03, 2020
```
* Handle corner case for ROC AUC

* Update

* Update doct
```
  b8dffcd5
- [Warning Message] Enrich Warning Information for Readonly Graphs (#1578) · a304df5d
  Mufei Li authored Jun 02, 2020
```
* Enrich warning information for readonly graphs

* CI

* CI
```
  a304df5d
- [DGL-LifeSci] Allow Generating Vocabulary from a New Dataset (#1577) · 38b9c0f8
  Mufei Li authored Jun 02, 2020
```
* Generate vocabulary from a new dataset

* CI"
```
  38b9c0f8
- [Hetero] Allow Batching Graphs with Zero Nodes/Edges (#1575) · a936f9d9
  Mufei Li authored Jun 02, 2020
```
* Allow batching graphs with zero nodes and edges

* Fix the case without node/edge features

* Fix lint
```
  a936f9d9
31 May, 2020 1 commit

[Model] Add SIGN model to example (#1571) · e979685a

Lingfan Yu authored May 31, 2020

* sign model

* mini-batch GPU eval & set default hyper-parameters

* add readme for sign

* minor

e979685a

28 May, 2020 1 commit

[Test] add regression tests for graph partitioning. (#1561) · b9e4a5b7

Da Zheng authored May 28, 2020



* add tests.

* 111

* fix

* Update asv.conf.json

* fix.

* benchmark partition with livejournal.

* fix benchmark

* fix.

* fix.

* remove ogb

* Revert "Update asv.conf.json"

This reverts commit dd327a5564f4ef01795e444e79b17265b9c8b391.

* change branch

* depend pandas

* Revert "change branch"

This reverts commit 1d4f93756492a93f2e3cde07229a59a31a8c380b.

* Update README.md
Co-authored-by: VoVAllen <jz1749@nyu.edu>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

b9e4a5b7

27 May, 2020 2 commits

[Bug] Fix PinSAGE crashes on hypersparse graphs (#1565) · d2e1cfce
Quan (Andy) Gan authored May 27, 2020

d2e1cfce

[Example][Optimization] Performance optimization for graphsage unsupervised example (#1531) · 901e0c24

xiang song(charlie.song) authored May 27, 2020



* test

* profile

* opt

* Some fix

* upd

* upd

* Add multigpu training support for graphsage unsupervised

* Add share neg

* Fix

* Add profile

* turn on eval

* upd

* Fix

* performance opt
Co-authored-by: Ubuntu <ubuntu@ip-172-31-12-103.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-14-53.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-29.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-50.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-52-181.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-87-240.ec2.internal>

901e0c24

26 May, 2020 1 commit

[Fix] New StreamWithBuffer interface (#1557) · 7639b5e7

Jinjing Zhou authored May 27, 2020



* WIP: rpc components

* client & server

* move network package to rpc

* fix include

* fix compile

* c api

* wip: test

* add basic tests

* missing file

* [RPC] Zero copy serializer (#1517)

* zerocopy serialization

* add test for HeteroGraph

* fix lint

* remove unnecessary codes

* add comment

* lint

* lint

* disable pylint for now

* add include for win

* windows guard

* lint

* lint

* skip test on windows

* refactor

* add comment

* fix

* comment

* 1111

* fix

* Update Jenkinsfile

* [RPC] Implementation of RPC infra (#1544)

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* remove client.cc and server.cc

* fix lint

* update

* update

* fix linr

* update

* fix lint

* update

* update

* update

* update

* update

* update

* update test

* update

* update test

* update

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* update comment

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* fix lint

* fix lint

* update

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* update

* update

* update

* update

* update

* update

* Refactor StreamWithBuffer (#1550)

* refactor

* fix with new interface

* remove copy

* fix

* remove comment
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Chao Ma <mctt90@gmail.com>

7639b5e7

25 May, 2020 2 commits
- [Readme] Add cuda 10.2 to docs (#1560) · cc07bd44
  Jinjing Zhou authored May 25, 2020
```
* add cuda 10.2

* type
```
  cc07bd44
- [RPC] Init server_state during get_server_state() (#1559) · 6a363378
  Chao Ma authored May 25, 2020
```
* init server_state

* update

* update
```
  6a363378
24 May, 2020 1 commit

[DGL-LifeSci] Pre-trained GIN (#1558) · 165c67cc

Mufei Li authored May 25, 2020

* Update

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

165c67cc

22 May, 2020 1 commit

[RPC] New RPC infrastructure. (#1549) · 3e696922

Chao Ma authored May 22, 2020



* WIP: rpc components

* client & server

* move network package to rpc

* fix include

* fix compile

* c api

* wip: test

* add basic tests

* missing file

* [RPC] Zero copy serializer (#1517)

* zerocopy serialization

* add test for HeteroGraph

* fix lint

* remove unnecessary codes

* add comment

* lint

* lint

* disable pylint for now

* add include for win

* windows guard

* lint

* lint

* skip test on windows

* refactor

* add comment

* fix

* comment

* 1111

* fix

* Update Jenkinsfile

* [RPC] Implementation of RPC infra (#1544)

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* remove client.cc and server.cc

* fix lint

* update

* update

* fix linr

* update

* fix lint

* update

* update

* update

* update

* update

* update

* update test

* update

* update test

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update comment

* update

* update

* update

* update

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* update

* update

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* update

* update

* update

* update

* fix lint

* fix lint

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

3e696922

19 May, 2020 2 commits
- [Docs] Fix docstrings and documentations (#1420) · 7ba9cbc6
  Quan (Andy) Gan authored May 19, 2020
```
* fix docs of to_block

* fix

* oops

* more fixes
```
  7ba9cbc6
- [CI] Give Windows more time to run (#1541) · e3793a5c
  Quan (Andy) Gan authored May 19, 2020
  
  e3793a5c
18 May, 2020 1 commit

[Performance] Reduces OpenMP atomic additions with zero inputs (#1527) · a296c1ef

pawelpiotrowicz authored May 18, 2020



* cirtical performance fix - reduce atomic

 * training faster up to 50%

* leave a TODO
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

a296c1ef

17 May, 2020 2 commits
- [Bug][Model] Bugfix in PinSAGE code (#1533) · 0b902d03
  Quan (Andy) Gan authored May 18, 2020
  
  0b902d03
- Update (#1534) · 7b6af87a
  Mufei Li authored May 17, 2020
  
  7b6af87a
16 May, 2020 1 commit

[DGL-LifeSci] WLN for Reaction Prediction (#1530) · 039fefc2

Mufei Li authored May 16, 2020

* Update

* Update

* Update

* Update

* Update

* Fix bug

* Update

* Update

* Update

* Update

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* UPdate

* Update

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* Udpate

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* Update

* Update

* Finalize

039fefc2

15 May, 2020 2 commits
- [Feature] Add a request_format api and enrich related docstring. (#1528) · 70dc2ee9
  Zihao Ye authored May 16, 2020
```
* upd

* upd

* lint

* fix

* bloody lint
```
  70dc2ee9
- removing old pinsage implementation (#1525) · ccd4eab0
  Quan (Andy) Gan authored May 15, 2020
  
  ccd4eab0
14 May, 2020 5 commits

[Feature] Split data for distributed training (#1505) · 96984fac

Da Zheng authored May 14, 2020



* fix tests in graph partition book.

* implement node_split and edge_split.

* fix a bug.

* add tests.

* remove unnecessary code.

* avoid storing graph structure in partition book.

* add partition book in DistGraph.

* Revert "avoid storing graph structure in partition book."

This reverts commit 55b11fbf9293efcae5f8c97e93f1e121399dadae.

* small fixes.

* add a test for boolean mask vector.

* fix test.

* fix bugs.

* make it work for all different cases.

* fix tests.

* fix boolean mask

* fix for TF

* fix for tensorflow.

* fix test for TF

* only support boolean mask for now.

* fix tests.

* make the code more readable.

* fix test.
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

96984fac

[hotfix] Several bug fix for remove nodes/edges in DGLGraph. (#1521) · cfb24790
Zihao Ye authored May 15, 2020
```
* upd

* upd

* better
```
cfb24790

[Bug?] Fixing compatibility of pickles across DGL versions (#1507) · 20ec7bb0

Quan (Andy) Gan authored May 15, 2020



* pickle compatibility before 0.4.2

* fixing for utils.Index

* add TODOs

* fix

* fix

* more compatibility checks for DGLGraph and DGLHeteroGraph objects

* lint
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

20ec7bb0

[Refactor] Restrict sparse format for DGLHeteroGraph (#1474) · c2e61ce1

Zihao Ye authored May 14, 2020



* upd

* simplify

* further simplify

* lint

* doc

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* lint

* rename format

* upd

* lint

* upd

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* udp

* debug

* upd

* upd

* upd

* upd

* upd

* 无可厚非吧

* 中三边肥

* 你一定要喊吗

* lint

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* Update unit_graph.h
Co-authored-by: Zihao Ye <yzh119@192.168.0.110>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

c2e61ce1

[Model] PinSAGE model with new sampler (#1334) · 1e84168e

Quan (Andy) Gan authored May 14, 2020



* another first commit

* test commit

* porting to nowplaying

* fixes

* more updates

* update readme

* add performance

* update

* switch to return_uv

* update result

* Update examples/pytorch/pinsage/process_nowplaying_rs.py
Co-authored-by: Xiagkun Hu <huxk_hit@qq.com>

* update with comments
Co-authored-by: Xiagkun Hu <huxk_hit@qq.com>

1e84168e

13 May, 2020 2 commits
- [Doc] write warning for remove_edges. (#1509) · 59aefe6e
  Da Zheng authored May 13, 2020
```
* write warning for remove_edges.

* fix.
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  59aefe6e
- [Performance] fixing performance on heterogeneous graph creation in specific cases (#1506) · e5b10b10
  Quan (Andy) Gan authored May 13, 2020
```
* [Performance] fixing performance on heterogeneous graph creation in specific cases

* fix for mxnet
```
  e5b10b10
12 May, 2020 2 commits

[Model] Spatial-temporal Graph Neural Networks for Traffic Prediction (#1445) · 9b34b1c2

jianmohuo authored May 12, 2020



* stgcn_wave model

* fix readme

* rm data file

* split sensors2graph

* rm dead code

* fix README

* rename class

* rm seed & dead code

* Update README.md

* rm dead code & networkx

* add num_layer papram, make model structure adjustable

* fix

* add model structure controller string, make code easier to understand and make model strcture more flexible

* Update main.py

* Update model.py

* fix

* Update README.md
Co-authored-by: Ubuntu <ubuntu@ip-172-31-14-255.ap-northeast-1.compute.internal>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

9b34b1c2

[Model] OGB products submission (#1512) · ed60f401
Quan (Andy) Gan authored May 12, 2020

ed60f401

11 May, 2020 1 commit
- [Backend] Turn to official dlpack for Tensorflow (#1511) · 6d048853
  Jinjing Zhou authored May 11, 2020
```
* Turn to official dlpack

* fix

* fix
```
  6d048853
09 May, 2020 1 commit

Fix bug in GIN Dataset degree OHE logic (#1498) · 02850212

Mohammad Amin Khashkhashi Moghaddam authored May 09, 2020

In the previous code, the same vector was being assigned to all the nodes in each graph.
`:` was used incorrectly assuming that only one row will be selected for each column but all rows were selected for each column.

02850212

08 May, 2020 4 commits

[bugfix] Fix the behavior of dgl.batch when batch size is 1 (#1483) · 1af0d806
Zihao Ye authored May 08, 2020
```
* fix

* upd

* upd

* upd

* upd

* clone

* upd
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
1af0d806

[Distributed] Add GraphPartitionBook (#1496) · ef7e4750

Chao Ma authored May 08, 2020

* Add graph-partition-book

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* udpate

* fix lint

* update

* update

* update

* update

* update

* update

* update

* skip test on GPU

* update

* update

* update

* update

* update

* update

* update

* fix lint

* update

* update

* update

* update

* fix unittest

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

ef7e4750

[Refactor] Explicit dtype for HeteroGraph (#1467) · dc8ca88e

Jinjing Zhou authored May 08, 2020



* 111

* 111

* lint

* lint

* lint

* lint

* fix

* lint

* try

* fix

* lint

* lint

* test

* fix

* ttt

* test

* fix

* fix

* fix

* mxnet

* 111

* fix 64bits computation

* pylint

* roll back

* fix

* lint

* fix hetero_from_relations

* remove index_dtype in to_homo and to_hetero

* fix

* fix

* fix

* fix

* remove default

* fix

* lint

* fix

* fix error message

* fix error

* lint

* macro dispatch

* try

* lint

* remove nbits

* error message

* fix

* fix

* lint

* lint

* lint

* fix

* lint

* fix

* fix random walk

* lint

* lint

* fix

* fix

* fix

* lint

* fix

* lint
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

dc8ca88e

fix metapath2vec on custom datasets (#1499) · de34e15a
Quan (Andy) Gan authored May 08, 2020

de34e15a

06 May, 2020 1 commit

[Test] Add tests for TensorFlow (#1501) · 16561a2e

Da Zheng authored May 06, 2020



* add test.

* move test code.

* remvoe unnecessary test.

* fix.

* turn on tests for TF.

* Revert "move test code."

This reverts commit e7b4f36395b2121a7be030bd4364a704d0e357bf.

* fix.

* fix.

* skip test for tensorflow.
Co-authored-by: Chao Ma <mctt90@gmail.com>

16561a2e