GitLab

Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>

Co-authored-by: Mufei Li <mufeili1996@gmail.com>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-19.ap-northeast-1.compute.internal>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

Co-authored-by: venzino-han <venzino.han@buzzvil.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>

* update

* update

* update

* lint

* update

* CI

* lint

* update doc

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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

* Update dgl.data.rst

* Add files via upload

* Add files via upload

* Add files via upload

* Update zinc.py

* Update dgl.data.rst

* Update test_data.py

* Add files via upload

* Update cluster.py

* Update pattern.py

* Update zinc.py

* Update zinc.py

* Update test_data.py

* lint

* fix

* fix path

* update test on label shape

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Co-authored-by: rudongyu <ru_dongyu@outlook.com>

* merge

* format

* rename

* sort

* sort

* update

* update

* update

* Update tests/utils/checks.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Enable AVX by default

* Fix linting errors

* Fix win64 build (libxsmm not linked)

Libxsmm on Win64 is not linked, should be disabled by default

* Fix clang format issues

* Change lower supported cpu version to LIBXSMM_X86_AVX2

Change lower supported cpu version to LIBXSMM_X86_AVX2 to address https://github.com/dmlc/dgl/issues/3459

 issue

* Fix unit test

Remove assumption that libxsmm is enabled in the config by default (only true for intel CPUs with AVX2 instructions)

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Co-authored-by: Ubuntu <ubuntu@ip-172-31-15-137.us-west-2.compute.internal>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* [Sparse] Remove the Python DiagMatrix class

* Update

* Update

* update

* Update

* new functional for creating data splits in graph

* minor fix in data split implementation

* apply suggestions from code review
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* refactoring + unit tests

* fix test file name

* move imports to the top

* Revert "fix test file name"

This reverts commit 126323e38c8de6fdc73c826dccc9048aed8f9634.

* remove nccl submodule

* address linter issues

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Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>

* rename

* sort

* rename

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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>

* Bugfix for reverse edge issue.

* Resolved copy/paste transcription error

* lint

* Added unit tests for graph with not all reverses.

* linting + added backend device test

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Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

[Feature] Add `state_dict`, `load_state_dict`, `param_groups` to `dgl.optim.SparseGradOptimizer` (#5311)

* init update

* all get/set optm_state

* add unit tests

* add docstring

* fix for multiple embeddings

* move embedding methods to private

* fix lint

* fix unit tests

* resolve comments

* merge master

* add PATTERN dataset

* fix bug

* fix bugs

* fix issues

* refine according to dongyu's comments

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Co-authored-by: BuptTab <gyzhou2000@gmail.com>
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

* expose GeneratePermutation

* add sparse_all_to_all_push

* add sparse_all_to_all_pull

* add unit test

* handle world_size=1

* remove python nccl wrapper

* remove the nccl dependency

* use pinned memory to speedup D2H copy

* fix lint

* resolve comments

* fix lint

* fix ut

* resolve comments

* fix duplicate worker_init_fn

* lint

* lint again

* uugh

* Update

* lint

* lint

* r prefix

* CI

* lint

* skip TF

* Update

* edge homophily

* linkx homophily

* format

* skip TF

* fix test

* update

* lint

* lint

* review

* lint

* update

* lint

* update

* CI

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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

* add CLUSTER dataset

* refine according to dongyu's comments

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Co-authored-by: rudongyu <ru_dongyu@outlook.com>

* [Sparse] Support converson to/from torch sparse tensor.

* Update

* Update

* lint

* lint

* r prefix

* CI

* lint

* skip TF

* Update

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Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

* [Sparse] Support column-wise softmax

* Update python/dgl/sparse/softmax.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

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Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* subgraphx commit

* nits

* newline eof added

* lint fix

* test script updated to use default values

* lint fix

* graphs that are used for test cases are updated to a small graph

* lint formatted

* test paramter adj to complete the test under 20s

* lint fixes

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Co-authored-by: kxm180046 <kxm180046@utdallas.edu>

* [Misc] Auto-format tests.

* more

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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>