GitLab

Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>

* pytorch_example

* fix

---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>

rename DGLHeteroGraph to DGLGraph

Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Use black for formatting

* limit line width to 80 characters.

* Use a backslash instead of directly concatenating

* file structure adjustment.

* file structure adjustment(2)

* codes for citation2

* format slight adjustment

* adjust format in models.py

* now it runs normally for all datasets.

* add comments; adjust code order.

* adjust indenting.
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Use black for formatting

* limit line width to 80 characters.

* Use a backslash instead of directly concatenating

* file structure adjustment.

* file structure adjustment(2)

* codes for citation2

* format slight adjustment

* adjust format in models.py

* now it runs normally for all datasets.
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Add device support in hetero_rgcn
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>

* use num_workers instead of hard code and enable cpu_affinity for pytorch > 1.12
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>

* Remove hard code num_workers and use dgl version to check if cpu_affinity is supported
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>

* Remove specified dl_cores and computer_cores

Add error print if num_workers are miss set
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>

* expected num_workers should be less than num_physical_cores
Signed-off-by: Chendi Xue <chendi.xue@intel.com>

* Update examples/pytorch/ogb/ogbn-mag/hetero_rgcn.py
Co-authored-by: Chang Liu <chang.liu@utexas.edu>

* Remove dgl version and num_workers print
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>

* add comment to explain is_support_affinity

* Fix typo
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>
Signed-off-by: Chendi Xue <chendi.xue@intel.com>
Co-authored-by: Chang Liu <chang.liu@utexas.edu>

Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* Fix mlp example

* Remove unused file

* Use black for formatting

* limit line width to 80 characters.

* Use a backslash instead of directly concatenating

* file structure adjustment.

* file structure adjustment(2)
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [Example] SEAL for OGBL

* update index

* update

* fix readme typo

* add seal sampler

* modify set ops

* prefetch

* efficiency test

* update

* optimize

* fix ScatterAdd dtype issue

* update sampler style

* update
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* version-1

* version-2

* version-3

* update examples/README

* Update .gitignore

* update performance in README, delete scripts

* 1st approving review

* 2nd approving review
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* NGNN for ogbl

* modify doc organization.

* merge similar parts

* 1st approving review.

* minor changes

* Remove the "Usage" section.
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* rgcn-ogbn-mag

* Add link in README.md

* correct code-format,add the reset_parameters function to the HeteroEmbedding module

* add the annotation in hetero.py

* add a unit test

* modify format

* Update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-50-143.us-west-2.compute.internal>

[Bugfix] Fix example case: examples/pytorch/ogb/ogbn-proteins and examples/pytorch/ogb/ogbn-products (#4080)

* [Bugfix] Fix ogbn-gat-proteins/products examples

* Remove unused BatchSampler definition

* Remove comments to ease reading/reviewing

* Remove dataloader wrapper

Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* rename

* Update node_classification.py

* more fixes...
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* enable UVA sampling with CPU indices

* add docs

* add more docs

* lint

* fix

* fix

* better error message

* use mp.Barrier instead of queues

* revert

* revert

* oops

* revert dgl.multiprocessing.spawn

* Update pytorch.py

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix

* Adding initial files of example

* Removing old timing code

* Improving doc strings and fixing some minor bugs

* Merging from upstream and addressing PR comments
Co-authored-by: zakjost <jostza@amazon.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update

* Update

* Update dependencies

* Update

* Update

* Fix ogbn-products gat

* Update

* Update

* Reformat

* Fix typo in node2vec_random_walk

* Specify file encoding

* Working for 6.7

* Update

* Fix subgraph

* Fix doc for sample_neighbors_biased

* Fix hyperlink

* Add example for udf cross reducer

* Fix

* Add example for slice_batch

* Replace dgl.bipartite

* Fix GATConv

* Fix math rendering

* Fix doc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-22-156.us-west-2.compute.internal>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* [Example] GCN on ogbn-arxiv dataset

* Add README.md

* Update GCN implementation on ogbn-arxiv

* Update GCN on ogbn-arxiv

* Fix typo

* Use evaluator to get results

* Fix duplicated

* Fix duplicated

* Update GCN on ogbn-arxiv

* Add GAT for ogbn-arxiv

* Update README.md

* Update GAT on ogbn-arxiv

* Update README.md

* Update README

* Update README.md

* Update README.md

* Add GAT implementation for ogbn-proteins

* Add GAT implementation for ogbn-proteins

* Add GAT implementation for ogbn-proteins

* Add GAT implementation for ogbn-proteins

* Add GAT implementation for ogbn-proteins

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Add examples for ogbn-products.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-products.

* Update examples for ogbn-products.

* Update examples for ogbn-arxiv.

* Update examples for ogbn-arxiv.

* Update examples for ogbn-arxiv.

* Update examples for ogbn-proteins.

* Update examples for ogbn-products.

* Update examples for ogbn-proteins.

* Update examples for ogbn-arxiv.

* Update examples for ogbn-proteins.

* Update README.md

* [Example] ogbn-arxiv & ogbn-proteins

* [Example] ogbn-arxiv & ogbn-proteins

* [Example] ogbn-arxiv & ogbn-proteins

* [Example] ogbn-arxiv & ogbn-proteins
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

* standardizing thread_wrapped_func

* lints

* Update __init__.py

* update

* Misc fix

* Update

* move edge_softmax to functional

* change examples

* fixes

* revert

* fix

* fix

* remove

* fix

* test

* add init
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update gatedgraphconv.py

* Update entity_classify.py

* Update data-process.rst

* Update reading_data.py

* Update data-process.rst

* Update utils.py

* Update knowledge_graph.py

* Update entity_classify.py

* Update rdf.py

* Update entity_classify_mb.py

* Update test_classify.py

* Update tensor.py

* Update sparse.py

* Update entity_classify_mp.py

* Update 6_line_graph.py

* sign for ogbn products, arxiv, mag

* texts

* fix

* update ogb folder readme

* use dgl nightly build
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* upd

* upd

* upd

* upd

* upd

* fix OpenMP compatibility issues

* typo

* partition

* misc

* fix typo

* num_parts=1

* import torch

* long

* print info

* print info

* print info

* upd

* remove debug code

* revert partition.py

* fix cut count

* fix cut count

* Revert "fix cut count"

This reverts commit 10926b4fd48f45c8f1ddb58be7db6c22e653effd.

* Revert "fix cut count"

This reverts commit 76465283bef093a2b4209ad70dd15d2437b2ec8a.

* type of deprecate

* typo in deprecate info

* fix typo

* use cv for partitioning

* CE

* no message

* revert

* typo

* no message

* no message

* no message

* practice

* dmlc-core

* DGLGraph
Co-authored-by: yzh119 <expye@outlook.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* line

* two lines

* update readme

* readme

* update readme

* update

* Implement LINE

* readme

* readme

* typos

* update readme
Co-authored-by: Zihao Ye <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>