GitLab

* merge

* format

* rename

* sort

* sort

* update

* update

* update

* Update tests/utils/checks.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* rename

* sort

* rename

---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>

* Bugfix for reverse edge issue.

* Resolved copy/paste transcription error

* lint

* Added unit tests for graph with not all reverses.

* linting + added backend device test

---------
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

* fix duplicate worker_init_fn

* lint

* lint again

* uugh

* [Misc] Auto-format tests.

* more

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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>

* rename

* remove test transpose

* udpate

* rename

* cleanup

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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>

* enable sparse on windows and mac

* that was stupid

* let's see what's going on..

* [Sparse] Fix the import error on Mac OS.

When using template functions that are defined in source files from DGL,
the loader of MacOS somehow cannot find their definitions. This fix simply
avoids depending on template functions from DGL headers.

With this fix, the sparse tests all pass on the MAC environment.

* ok this is the problem

* make errors clearer

* uh

* test

* Update __init__.py

* disabling ddp on windows

---------
Co-authored-by: czkkkkkk <zekucai@gmail.com>

* overwrite default_collate_fn

* Update dataloader.py

* Update dataloader.py

* Update dataloader.py

* Update dataloader.py

* Update test_dataloader.py

* revert the test code being reverted in #4956

* sample neighbors with masks

* oops

* refactor again

* remove

* remove debug code

* rename macro

* address comments

* more stuff

* remove

* fix

* try fix unit test

* oops

* fix test

* oops

* change name

* rename a lot of stuff

* oops

* ugh

* misc fixes

* lint

* address a lot of comments

* lint

* lint

* fix

* that was silly

* fix

* fix

* fix

* oops

* test ddp dataloader

* add pure_gpu for edgedataloader

* resolve ddp issue

* enable use for weighted neighbor sampler and biased random walk

* add unit tests

* fix for mxnet/tf

* fix typo

* fix

* fix

* Update utils.py

Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* enable UVA sampling with CPU indices

* add docs

* add more docs

* lint

* fix

* fix

* better error message

* use mp.Barrier instead of queues

* revert

* revert

* oops

* revert dgl.multiprocessing.spawn

* Update pytorch.py

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* fix

* unit test

* fix uva sampling with features

* fix

* add is_listlike function to distinguish strings from sequence

* fix
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>

* fixes

* fix

* more fixes

* update

* oops

* lint?

* temporarily revert - will fix in another PR

* more fixes

* skipping mxnet test

* address comments

* fix DDP

* fix edge dataloader exclusion problems

* stupid bug

* fix

* use_uvm option

* fix

* fixes

* fixes

* fixes

* fixes

* add evaluation for cluster gcn and ddp

* stupid bug again

* fixes

* move sanity checks to only support DGLGraphs

* pytorch lightning compatibility fixes

* remove

* poke

* more fixes

* fix

* fix

* disable test

* docstrings

* why is it getting a memory leak?

* fix

* update

* updates and temporarily disable forkingpickler

* update

* fix?

* fix?

* oops

* oops

* fix

* lint

* huh

* uh

* update

* fix

* made it memory efficient

* refine exclude interface

* fix tutorial

* fix tutorial

* fix graph duplication in CPU dataloader workers

* lint

* lint

* Revert "lint"

This reverts commit 805484dd553695111b5fb37f2125214a6b7276e9.

* Revert "lint"

This reverts commit 0bce411b2b415c2ab770343949404498436dc8b2.

* Revert "fix graph duplication in CPU dataloader workers"

This reverts commit 9e3a8cf34c175d3093c773f6bb023b155f2bd27f.
Co-authored-by: xiny <xiny@nvidia.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* implement pin_memory/unpin_memory/is_pinned for dgl.graph

* update python docstring

* update c++ docstring

* add test

* fix the broken UnifiedTensor

* XPU_SWITCH for kDLCPUPinned

* a rough version ready for testing

* eliminate extra context parameter for pin/unpin

* update train_sampling

* fix linting

* fix typo

* multi-gpu uva sampling case

* disable new format materialization for pinned graphs

* update python doc for pin_memory_

* fix unit test

* UVA sampling for link prediction

* dispatch most csr ops

* update graphsage example to combine uva sampling and UnifiedTensor

* update graphsage example to combine uva sampling and UnifiedTensor

* update graphsage example to combine uva sampling and UnifiedTensor

* update doc

* update examples

* change unitgraph and heterograph's PinMemory to in-place

* update examples for multi-gpu uva sampling

* update doc

* fix linting

* fix cpu build

* fix is_pinned for DistGraph

* fix is_pinned for DistGraph

* update graphsage unsupervised example

* update doc for gpu sampling

* update some check for sampling device switching

* fix linting

* adapt for new dataloader

* fix linting

* fix

* fix some name issue

* adjust device check

* add unit test for uva sampling & fix some zero_copy bug

* fix linting

* update num_threads in graphsage examples
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* initial update

* more

* more

* multi-gpu example

* cluster gcn, finalize homogeneous

* more explanation

* fix

* bunch of fixes

* fix

* RGAT example and more fixes

* shadow-gnn sampler and some changes in unit test

* fix

* wth

* more fixes

* remove shadow+node/edge dataloader tests for possible ux changes

* lints

* add legacy dataloading import just in case

* fix

* update pylint for f-strings

* fix

* lint

* lint

* lint again

* cherry-picking commit fa9f494

* oops

* fix

* add sample_neighbors in dist_graph

* fix

* lint

* fix

* fix

* fix

* fix tutorial

* fix

* fix

* fix

* fix warning

* remove debug

* add get_foo_storage apis

* lint

* first commit

* a bunch of fixes

* add unique

* lint

* lint

* lint

* address comments

* Update negative_sampler.py

* fix

* description

* address comments and fix

* fix

* replace unique with replace

* test pylint

* Update negative_sampler.py

* [Feature] enable async transfer in NodeDataLoader for homograph

* fix lint issues

* fix device choose when creating stream

* fix test on cpu only machine

* fix pin_memory config

* support homo only

* avoid creating stream in each step and sync via event

* fix lint

* enable graph copy on non-default stream

* fix lint

* refine arg description

* fix conflicts

* first commit

* next commit

* third commit

* add ShaDow-GNN sampler and unit tests

* fixes

* lint

* cr*p

* lint

* fix lint

* fixes and more unit tests

* more tests

* fix docs

* lint

* fix

* fix

* fix

* fixes

* fix doc

Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

* enable unit tests for dataloader on the GPU

* fix compatibility

* copyright

* fix linting
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>

* fix.

* fix.

* fix.

* fix.

* Fix test

* Deprecate old DistEmbedding impl, use synchronized embedding impl

* Basic imple of heterogeneous on homogenenous sampling

* make pass

* Pass C++ test

* Add python test code

* lint

* lint

* Add MultiLayerEtypeNeighborSampler

* Add unitest for single machine dataloader

* Add dist dataloader test for edge type sampler

* Fix lint

* fix

* support for per etype sample

* Fix some bug and enable distributed training with per edge sample

* fix

* Now distributed training works

* turn off some mxnet

* turn off mxnet for some dist test

* fix

* upd

* upd according to the comments

* Fix

* Fix test and now distributed works.

* upd

* upd

* Fix

* Fix bug

* remove dead code.

* upd

* Fix

* upd

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-71-112.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-66.ec2.internal>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Make loader items iterator

* Update test_dataloader.py

* Update __init__.py

* Update test_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* return indices from dataloader

* fixes

* fix

* fix distgraph and added some todos

* Update dataloader.py

* Update dataloader.py
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* add graph dataloader

* add to doc

* fix

* fix

* fix docstring

* update according to torch default_collate

* add unittest

* fix

* fix lint

* fix

* bug fixes

* remove __deepcopy__; not sure what the behavior should be

* lint

* skip gpu test

* fix

* fix dist dataloader

* add comment

* remove assert

* Update graph

* Fix for dgl.graph

* from_scipy

* Replace canonical_etypes with relations

* from_networkx

* Update for hetero_from_relations

* Roll back the change of canonical_etypes to relations

* heterograph

* bipartite

* Update doc

* Fix lint

* Fix lint

* Fix test cases

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix test

* Fix

* Update

* Use DGLError

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* rewrite sanity checks

* delete unnecessary checks

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Update

* Fix

* Update

* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* clean commit

* oops forgot the most important files

* use einsum

* copy feature from frontier to block

* Revert "copy feature from frontier to block"

This reverts commit 5224ec963eb6a3ef1b6ab74d8ecbd44e4e42f285.

* temp fix

* unit test

* fix

* revert jtnn

* lint

* fix win64

* docstring fixes and doc indexing

* revert einsum in sparse bidecoder

* fix some examples

* lint

* fix due to some tediousness in remove_edges

* addresses comments

* fix

* more jtnn fixes

* fix

* neighbor sampler data loader first commit

* more commit

* nodedataloader

* fix

* update RGCN example

* update OGB

* fixes

* fix minibatch RGCN crashing with self loop

* reverting gatconv test code

* fix

* change to new solution that doesn't require tf dataloader

* fix

* lint

* fix

* fixes

* change doc

* fix docstring

* docstring fixes

* return seeds and input nodes from data loader

* fixes

* fix test

* fix windows build problem

* add pytorch wrapper

* fixes

* add pytorch wrapper

* add unit test

* add -1 support to sample_neighbors & fix docstrings

* docstring fix

* lint

* add minibatch rgcn evaluations
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Tong He <hetong007@gmail.com>