Commits · 8a20b6c19cbc706258f79b93f383b3f92a5a87f8 · OpenDAS / dgl

21 Jun, 2020 3 commits

[Optimization] Replaced std::unordered_map by phmap::flat_hash_map (#1662) · 8a20b6c1
IzabelaMazur authored Jun 21, 2020
```
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
```
8a20b6c1

[Op] Farthest Point Sampler in Cpp and CUDA (#1630) · 3d47693b

Tong He authored Jun 22, 2020

* working framework without actual algorithm logic

* rename

* fix

* fps passes compilation

* correct algorithm

* add cuda implementation

* update random start

* before refactor

* pass compilation but cuda not working

* working

* code working, will add docstring

* add mxnet support

* update docstring

* update doc and test

* cpplint

* cpcplint

* pylint

* temporary fix

* fix for win64

* fix unitetest

* fix

* fix

* remove comment

* move to geometry package

* remove redundant include

* add docstrings and comments

* add proof

* add validity check

3d47693b

[RPC] Support null NDArray in RPC communication (#1653) · c8b18b79
Jinjing Zhou authored Jun 21, 2020

c8b18b79

20 Jun, 2020 2 commits

[Example] Sample-based GAT on ogbn-product dataset (#1613) · 8192b10b

xiang song(charlie.song) authored Jun 20, 2020



* Add ogbn-product with GAT with GraphSAGE sampling

* Update Readme

* Add self loop

* update score

* Update score

* Fix

* Update

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-34-186.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

8192b10b

[Bugfix]fix the bug for knngraph (#1667) (#1668) · 613df6f9

JryonGitHub authored Jun 20, 2020



* fix the bug for knngraph (#1667)

* fix the bug for knngraph (#1667)

* fix the bug for knngraph (#1667)

* fix the bug for knngraph (#1667)

* fix the bug for knngraph (#1667)

* fix the bug for knngraph (#1667)
Co-authored-by: jiruyi <18810981229@gmail.com>

613df6f9

19 Jun, 2020 3 commits

Update README.md · a0e40998
Minjie Wang authored Jun 19, 2020

a0e40998

[CUDA] Many CUDA operators; Prepare for DGLGraph on CUDA (#1660) · f1b19a6b

Minjie Wang authored Jun 19, 2020

* add cuda utils; change g.to; add g.device

* split array.h into several headers

* cuda index select

* file

* three cuda kernels

* add cuda elementwise arith and several others

* cuda CSRIsNonZero

* fix lint

* lint

* lint

* fix bug in changing ctx to property

* address comments

* remove unused codes

* address comments

f1b19a6b

[Kernel] Migrate traversal on adjlist to CSR (#1650) · 42b0c38f

xiang song(charlie.song) authored Jun 19, 2020



* traversal to new framework

* add new

* Fix compile

* Pass test

* keep old version

* lint

* lint

* Fix

* Fix

* Fix compatability with new master

* Fix test and tutorials

* Update according to comments

* Fix test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

42b0c38f

18 Jun, 2020 5 commits

[RPC] Sampling over RPC (#1616) · fb248b67

Jinjing Zhou authored Jun 19, 2020



* fix

* test1111

* 111

* 111

* fff

* lint

* 111

* lint

* lint

* 111

* fijx

* 111

* fix

* 111

* commit

* 111

* 111

* lint

* fix typo

* fix

* lint

* fix

* 111

* support mxnet

* support mxnet

* lint

* remove print

* fix

* fix test.

* fix test.

* fix test.

* try to fix an undetermistic error.
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

fb248b67

[Distributed] support no shared memory. (#1663) · ff5b5a4a

Da Zheng authored Jun 18, 2020

* support no shared memory.

* add test.

* add CAPI to check existence of shared memory.

* revert the change in src/runtime/ndarray.cc

* update docstring.

* fix compile.

ff5b5a4a

[Optimization] Optimize pickling of heterograph (#1570) · 0a4e8b32

Qidong Su authored Jun 18, 2020



* update

* update

* update

* update

* update

* update

* backward compatibility

* update

* update

* update

* update

* update

* test

* test

* update

* update

* update

* update

* update

* update
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

0a4e8b32

[Doc] fix a doc for partition_graph. (#1657) · dc86bd42
Da Zheng authored Jun 17, 2020
```
* fix a doc for partition_graph.

* Update partition.py

* fix.
```
dc86bd42
[BUGFIX] reshuffle node features in range partitioning. (#1659) · b9ec3e36
Da Zheng authored Jun 17, 2020
```
* fix a bug.

* fix test.

* simplify.

* fix test.

* test edge features.

* fix.
```
b9ec3e36

17 Jun, 2020 2 commits

[RPC] HandleCtrlC Register for handling Ctrl+C event. (#1652) · 8fccdaf6
Chao Ma authored Jun 17, 2020
```
* update

* update

* update

* update

* fix lint
```
8fccdaf6

[KVStore] Add fast-pull for kvstore (#1647) · b372b3c7

Chao Ma authored Jun 17, 2020

* add fast-pull

* update

* add fast-pull

* update

* update

* update

* update test

* update

* update

* update

* update

* update

* update

* update

* update

* add omp

* update

* update

b372b3c7

16 Jun, 2020 1 commit
- [KVStore] make pull/push handler per tensor. (#1646) · e8a56dc1
  Da Zheng authored Jun 15, 2020
```
* make pull/push handler per tensor.

* update.
```
  e8a56dc1
15 Jun, 2020 7 commits

[Feature] Range partition (#1522) · 41349dce

Da Zheng authored Jun 15, 2020



* add reorder immutable graph.

* add python API.

* add reorder for csr.

* remove gk version.

* fix

* add cpp test.

* bug fixes

* fix tests.

* fix bugs and add check

* fix test.

* add omp.

* add comments.

* add coo reorder.

* fix a bug.

* handle reorder for different graph structues.

* fix lint.

* fix.

* add original ids.

* reshuffle nodes before metis partition.

* inner nodes are in contiguous Id range.

* reshuffle nodes/edges when partitioning.

* load partition return graph partition book.

* use inner_node/inner_edges

* add and test range partition book.

* count inner_edge correctly.

* fix lint.

* fix lint.

* fix lint.

* fix errors.

* fix errors.

* fix for TF.

* fix.

* fix.

* change docstring.

* support logical and.

* add comments.

* avoid copy.

* fix

* update docstring.

* fix a bug.

* add range search.

* fix

* fix a bug.

* add more tests.

* load graph partition book.

* support shared memory for range partition book.

* fix a bug.

* fix.

* fix lint.

* remove check

* fix test.

* remove num_nodes and num_edges

* fix lint.

* fix graph partition book.

* address comments.

* use makedirs.

* fix compile
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Chao Ma <mctt90@gmail.com>

41349dce

[Bug?] Fix #1563 (#1642) · 3e72c53a
Quan (Andy) Gan authored Jun 15, 2020

3e72c53a

[Bug] fixing from_edge_list (#1615) · ba2ee7bd

Quan (Andy) Gan authored Jun 15, 2020


Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

ba2ee7bd

correct PinSAGE knn example syntax (#1617) · 3ebf2660
Theofilos Papapanagiotou authored Jun 15, 2020
```
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Chao Ma <mctt90@gmail.com>
```
3ebf2660

[Kernel] CUDA CSR2COO COOSort COO2CSR (#1620) · d6d517bb

Minjie Wang authored Jun 15, 2020



* add cuda source

* moving codes from kernel2 branch

* operator overloading

* Better error message for unsupported device

* fix c tests

* coo sort using cusparse

* move test_rpc to distributed

* lint

* address comments and add utests
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

d6d517bb

[NN] Add low memory support for nn.RelGraphConv (#1631) · 61f007c4

xiang song(charlie.song) authored Jun 15, 2020



* Add low memory support for relgraphconv
y

* lint

* Add tf support

* Fix lint

* Fix mxnet

* Fix mxnet

* Fix

* minor fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

61f007c4

[bugfix] Quick fix of #1547 (#1600) · 04522a76
Zihao Ye authored Jun 15, 2020
```
* upd

* upd
```
04522a76

13 Jun, 2020 1 commit
- [Bug] Fix broken initialization in Reddit (#1634) · 57d111f9
  Quan (Andy) Gan authored Jun 14, 2020
  
  57d111f9
12 Jun, 2020 1 commit

[Feature] Add dot product attention (#1604) · 02dd6d90

zhjwy9343 authored Jun 12, 2020



* Add dotproduct attention

* [Feature] Add dotproduct attention

* [Feature] Add dotproduct attention

* [Feature] Add dotproduct attention

* [New] Update landing page

* [New] Update landing page

* [New] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

02dd6d90

11 Jun, 2020 7 commits

[HeteroGraph] Improve Error Messages for find_edges (#1626) · fe207b45

Mufei Li authored Jun 11, 2020



* Improve error message

* Fix

* Fix
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

fe207b45

[CI] Use spawn in unittest instead of fork (#1627) · 77006db2

Jinjing Zhou authored Jun 11, 2020



* update

* update

* update

* update

* update

* update

* fix ci using spawn
Co-authored-by: aksnzhy <mctt90@gmail.com>

77006db2

[rpc] Move test_rpc.py to distributed and use dynamic port binding (#1623) · 0c313e51
Chao Ma authored Jun 11, 2020
```
* update

* update

* update

* update

* update

* update

* update

* update
```
0c313e51
Add ShawXh as Contributors (#1622) · 0c408603
xiang song(charlie.song) authored Jun 11, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
0c408603
[Fix] clang warnings (#1618) · 3ddc7b4d
Jinjing Zhou authored Jun 11, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
3ddc7b4d
[RPC] Add send_request_to_machine() and remote_call_to_machine() (#1619) · a67ba946
Chao Ma authored Jun 11, 2020
```
* add send_request_to_machine()

* update

* update

* update

* update

* update

* update

* fix lint

* update
```
a67ba946

Refactor distributed graph store (#1597) · 50962c43

Da Zheng authored Jun 10, 2020

* refactor graph store for new kvstore.

* fix kvstore.

* fix.

* fix lint complains.

* add docstring.

* small fix in graph partition book.

* fix.

* remove tests

* disable sampling.

* Revert "disable sampling."

This reverts commit 70451008f61ff1481d5dadbf8bd199470aee559d.

* Revert "remove tests"

This reverts commit 1394364243bdd73b669abde6193a74e2cda5521d.

50962c43

10 Jun, 2020 2 commits
- Fix input data source (#1612) · 8531ee6a
  xiang song(charlie.song) authored Jun 10, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-52-181.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
```
  8531ee6a
- [Test] Fix partition ci fail (#1614) · 484bbcc8
  Jinjing Zhou authored Jun 10, 2020
  
  484bbcc8
09 Jun, 2020 2 commits
- [KVStore] Update kvstore test (#1607) · 48cc8fa8
  Chao Ma authored Jun 09, 2020
```
* remove freeze

* update

* update

* fix lint

* update test

* update
```
  48cc8fa8
- [KVStore] Remove Freeze flag (#1605) · 8eab08d0
  Chao Ma authored Jun 09, 2020
```
* remove freeze

* update

* update

* fix lint
```
  8eab08d0
07 Jun, 2020 1 commit
- Fix (#1596) · cbe4c28f
  Mufei Li authored Jun 07, 2020
  
  cbe4c28f
05 Jun, 2020 1 commit
- [LifeSci] Move to Independent Repo (#1592) · 36c7b771
  Mufei Li authored Jun 05, 2020
```
* Move LifeSci

* Remove doc
```
  36c7b771
04 Jun, 2020 2 commits

[Example] Implement deepwalk by dgl and pytorch (#1503) · 94c67203

Hao Xiong authored Jun 04, 2020



* deepwalk

* add docstr, etc.

* add tested version

* some doc

* some doc

* add sample and some docs, fix a bug

* update speed

* update speed

* docs
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

94c67203

[KVStore] Re-write kvstore using DGL RPC infrastructure (#1569) · 64f49703

Chao Ma authored Jun 04, 2020

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update init_data

* update server_state

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* debug init_data

* update

* update

* update

* update

* update

* update

* test get_meta_data

* update

* update

* update

* update

* update

* debug push

* update

* update

* update

* update

* update

* update

* update

* update

* update

* use F.reverse_data_type_dict

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

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* update

* update

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* update

* update

* update

* update

* update

* fix lint

* update

* fix lint

* update

* fix lint

* update

* update

* update

* update

* fix test

* update

* update

* update

* update

* update

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* update

* update

* update

* update

* set random seed

* update

64f49703