GitLab

* rename

* remove test transpose

* udpate

* rename

* cleanup

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Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>

Co-authored-by: songqing.zhang <songqing.zhang@shopee.com>

[bugfix] Fix assertions in /src/runtime/workspace.h and expand unit tests for sparse optimizer (#5299)

* Fix assertions for size 0 workspaces

* Expand unit test to cover case of communication

* Fixes

* Format

* Fix c++ formatting

* Set USE_LIBXSMM default to OFF.

* update

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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* update cugraph_relgraphconv

* update equality test

* update cugraph rgcn example

* update RelGraphConvAgg based on latest API changes

* enable fallback option to fg when fanout is large

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Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* move example test from unit test to examples

* oops

* oops

* ok

Following changes are made in this PR.
1. In dataset_utils.py, when reading edges from disk we follow the order defined by the STR_EDGE_TYPE key in the metadata.json file. This order is implicitly used to assign edgeid to edge types. This same order is used to read edges from the disk as well.
2. Now the unit test framework will also randomize the order of edges read from the disk. This is done for the edges when reading from the disk for the unit tests.
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* enable sparse on windows and mac

* that was stupid

* let's see what's going on..

* [Sparse] Fix the import error on Mac OS.

When using template functions that are defined in source files from DGL,
the loader of MacOS somehow cannot find their definitions. This fix simply
avoids depending on template functions from DGL headers.

With this fix, the sparse tests all pass on the MAC environment.

* ok this is the problem

* make errors clearer

* uh

* test

* Update __init__.py

* disabling ddp on windows

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Co-authored-by: czkkkkkk <zekucai@gmail.com>

Add Id hash map

* add SVD positional encoding

* modify importing module

* Fixed certain problems

* Change the test unit to a nonsigular one

* Fixed typo and make accord with lintrunner

* added svd_pe into dgl.rst

* Modified dgl.rst

* remove_mock_sparse_example

* mock_sparse_test

* remove_mock_sparse

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Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* enable dgl sparse build in default

* disable sparse build on cugraph

* update

* use NotImplemented

* format

* sparse sub

* address comments

* lint

* Update elementwise_op_diag.py

* ugh
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

* use NotImplemented

* format

* extend to pytorch scalar

* sparse div scalar

* oops

* Apply suggestions from code review
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [Sparse] Refactor matmul interface.

* Update

* as_sp_to_sp

* dense

* revert_mock

* test

* revert
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>

* use NotImplemented

* format

* extend to pytorch scalar

* reformat

* reformat

* lint

* use NotImplemented

* add TypeError tests

* format

* lint

* fix type

* fix docstring

* lint

* remove redundant condition

* Add failing unit test

* Add fix

* Remove extra newline

* skip cpu test
Co-authored-by: Xin Yao <yaox12@outlook.com>

* overwrite default_collate_fn

* Update dataloader.py

* Update dataloader.py

* Update dataloader.py

* Update dataloader.py

* Update test_dataloader.py

* revert the test code being reverted in #4956

* Update

* Update

* Update

* lint

* lint

* Update

* CI

* Update diag_matrix.py

* Update sparse_matrix.py

* Update sparse_matrix.py
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>

* Allow reading and writing single-column vector Parquet files.

These files are commonly produced by Spark ML's feature processing code.

* [Dist] Only write single-column vector files for Parquet in tests.

* update

* Update

* Update

* Update

* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

[Dist] Add support for Parquet-formatted edges files, remove some assumptions on edge file number. (#5051)

* [Dist] Add support for Parquet-formatted edges files, remove some assumptions on edge file number.

* [Dist] Add parquet edges option to unit tests.
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* Add SpatialEncoder and SpatialEncoder3d

* Optimize the code execution efficiency

* Fixed certain problems according to Dongyu's suggestions.

* Fix an error about probability of division by zero in PathEcoder; Change certain designs in SpatialEncoder

* Fix a typo

* polish the docstring

* fix doc

* lint
Co-authored-by: Ubuntu <ubuntu@ip-172-31-14-146.ap-northeast-1.compute.internal>
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

* update

* lint

* lint

* comments
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

* new print func

* lintrunner

* pass gcn

* example tests

* pass gcnii, hgnn, sgc, sign

* black

* test file

* add torchmetrics

* migrate appnp, c_and_s, twirls

* fix style

* minor fix

* fix hypergraphatt and twirls

* pass gat

* fix torchmetric

* lintrunner
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [Sparse] Support BSpMM and BSDDMM

* Update SpMM and SDDMM error messages

* Use TORCH_CHECK

* Update error string

* add coalesce() and has_duplicate()

* Add duplicate check in spspmm

* black

* fix

* clang-format

* lintrunner

* minor fix

* fix