GitLab

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Fix] Add random

* [Bug] Fix batch norm error

* [Doc] Test with CN in Sphinx

* [Doc] Test with CN in Sphinx

* [Doc] Remove the test CN docs.

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Doc] fill readme with new performance results

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Refactor and split chapter 4

* [Fix] Remove CompGCN example codes

* [Doc] Add chapter 2 refactor and split

* [Fix] code format of savenload

* [Doc] Split chapter 3

* [Doc] Add introduction phrase of chapter 2

* [Doc] Add introduction phrase of chapter 2

* [Doc] Add introduction phrase of chapter 3

* Fix

* Update chapter 2

* Update chapter 3

* Update chapter 4
Co-authored-by: mufeili <mufeili1996@gmail.com>

* [bug][doc] Fix bug in batched heterograph training documentation

* added references of "above" with hyperlinks

* address comments

* fix API doc on EdgeDataLoader
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Fix doc and user guide

* Update heterograph.py
Co-authored-by: Ubuntu <ubuntu@ip-172-31-13-9.us-west-2.compute.internal>

* fix link in message passing doc

* more specific link

* Update Doc for UDFs

* add degree bucketing explanation

* Update udf.rst

* Update
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Zihao Ye <expye@outlook.com>

* Update dgl.DGLGraph.rst

* Update gcn.py

* fix dataloading docs

* fix another

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* Remove SSE

* Update env_var.rst

* check num_workers

* update

* update

* update

* update

* update

* update

* update user guide

* fix

* fix

* distributed APIs.

* add guide.

* add index.

* fix user guide link

* some fix on tensorflow

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

* fix links and ref

* Graph chapter, user guide

* Split

* Update

* WIP: api

* dgl.sampling, dgl.data

* dgl.sampling; dgl.dataloading

* sampling packages

* convert

* subgraph

* deprecate

* subgraph APIs

* All docstrings for convert/subgraph/transform

* almost all funcs under dgl namespace

* WIP: DGLGraph

* done graph query

* message passing functions

* lint

* fix merge error

* fix test

* lint

* fix
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* remove mxnet tutorial

* remove sse

* fix docs

* quick fix.

* update sparse optimizer.

* fix.

* fix

* add doc.

* update DistGraph.

* add DistTensor.

* update DistEmbedding.

* add partition.py

* add sampling.

* fix.

* add graph partition book and create a base class.

* fix test.

* add rst.

* update doc rst.

* update.

* fix.

* fix docs

* update distributed tensor and embeddings.

* add checks.

* update DistGraph.

* update initialization.

* fix graph partition book.

* update graph partition book.

* update partition.

* update partition.

* fix.

* add example code.

* update DistGraph

* Update python/dgl/distributed/dist_context.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_context.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* update initialize.

* update dataloader.

* update distgraph.

* update DistGraph.

* update DistTensor.

* update.

* more updates.

* fix lint.

* add num_nodes and num_edges
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* fix mxnet nn doc and no note on chebconv

* change notes to note to highlight

* Update graph

* Fix for dgl.graph

* from_scipy

* Replace canonical_etypes with relations

* from_networkx

* Update for hetero_from_relations

* Roll back the change of canonical_etypes to relations

* heterograph

* bipartite

* Update doc

* Fix lint

* Fix lint

* Fix test cases

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix test

* Fix

* Update

* Use DGLError

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* rewrite sanity checks

* delete unnecessary checks

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Update

* Fix

* Update

* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* add chebconv

* fix

* lint

* fix lint

* docs

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

* [Doc] User guide section 5 and 6

* oops

* fix

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update knn graph docs

* more docs

* [Doc] transform module docstrings

* remove copy_ndata and copy_edata

* fix

* lint

* fix

* fix

* fix

* clean up docstrings

* fix docstring

* dtype specifications

* addresses comments

* fix
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* go through gcn, relgcn

* fix tagconv formula

* fix doc in sageconv

* fix sgconv doc

* replace hat with tilde

* more comments on gmmconv

* fix agnnconv chebconv doc

* modify nnconv doc

* remove &

* add nn conv examples

* Rebase master

* More merge conflicts

* check homo

* add back self loop for some convs, check homo in tranform

* add example for denseconv

* add example and doc for dotgat and cfconv

* check in-degree for graphconv

* add language fix

* gconv address all comments

* another round of change based on api template

* change agnn

* go through agnn, appnp, atomic, cf, cheb, dense, gat, sage modules

* finish pytorch part of nn conv

* mxnet graphconv done

* tensorflow graphconv works

* add new modules into doc

* add comments to not split code

* refine doc

* resr

* more comments

* more fix

* finish conv and dense conv part api

* pylint fix

* fix pylink

* fix pylint

* more fix

* fix

* fix test fail because zere in degree

* fix test fail

* sage is not update for mxnet tf
Co-authored-by: Ubuntu <ubuntu@ip-172-31-0-81.us-east-2.compute.internal>

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst