Commits · 794ec4a44020d69cfeab9982bc6830e93e0b86e9 · OpenDAS / dgl

22 Jun, 2022 1 commit

[BugFix] fix unstable sort when using dataloader with HeteroGraph (#4147) · 794ec4a4

maqy authored Jun 22, 2022



* fix unstable sort

* add torch version check

* reformat

* split too long comments

* Update dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

794ec4a4

21 Jun, 2022 1 commit

[DGL-Go] Inference for Node Prediction Pipeline (full & ns) (#4095) · 31e4a89b

Mufei Li authored Jun 21, 2022

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31e4a89b

20 Jun, 2022 3 commits

[Dist] defer to load node/edge feats (#4143) · 69226588

Rhett Ying authored Jun 20, 2022



* [Dist] defer to load node/edge feats

* fix lint

* Update python/dgl/distributed/partition.py
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>

* Update python/dgl/distributed/partition.py
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>

* fix lint
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>

69226588

[Doc] Add ArangoDB-DGL in DGL-powered projects (#4139) · 532d4ac3
Anthony Mahanna authored Jun 20, 2022
```
* Update README.md

* fix: ArangoDB hyperlink
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
532d4ac3
[Dist] re-try to receive rpc ndarray msg (#4142) · 3ffe0c09
Rhett Ying authored Jun 20, 2022

3ffe0c09

17 Jun, 2022 1 commit

[Doc] Add distributed link prediction tutorial (#3993) · 4a9be030

RuisiZhang authored Jun 17, 2022



* add dist tutorial

* add predictor in dist prediction

* refine after rendering

* change links

* Update 2_link_prediction.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

4a9be030

16 Jun, 2022 1 commit
- [Dist] set socket as default backend for RPC (#4120) · b258729b
  Rhett Ying authored Jun 16, 2022
```
* [Dist] set socket as default backend for RPC

* add tests both for socket and tensorpipe
```
  b258729b
15 Jun, 2022 3 commits

add gtrick in DGL-powered projects (#4128) · 702d08db
Yunxin Sang authored Jun 15, 2022

702d08db

[Doc] Updated transform ops list in dgl.rst (Issue #4087) (#4123) · 5f04fc2b

ndickson-nvidia authored Jun 15, 2022



* * Added functions from dgl.transforms.functional that were missing from the list for documentation in dgl.rst

* * Sorted transform ops list in dgl.rst in alphabetical order
Co-authored-by: Xin Yao <xiny@nvidia.com>

5f04fc2b

[Dist] Add env var for non-default SSH configs in tests (#4098) · 652f4c07

Serge Panev authored Jun 14, 2022


Signed-off-by: Serge Panev <spanev@nvidia.com>
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

652f4c07

14 Jun, 2022 5 commits

[Bugfix] Disable non-atomic atomic operations (#4117) · 473bf15f
nv-dlasalle authored Jun 14, 2022
```
* Disable non-atomic atomic operations

* Improve error message

* Make error message more friendly
```
473bf15f

[Bugfix] Fix fail to create_shared_mem_array in ddp spawn train #4110 (#4111) · 9a6f2924

彭齐荣 authored Jun 14, 2022



* Fix fail to create_shared_mem_array in ddp spawn train #4110

Fix fail to create_shared_mem_array in ddp spawn train #4110

* [Bugfix] Fix fail to create_shared_mem_array in ddp spawn train #4110

[Bugfix] Fix fail to create_shared_mem_array in ddp spawn train #4110
Replace random.seed() to random_ = random.Random()

* Update pytorch.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

9a6f2924

[CI] loose time liimit for unit tests on Win64 (#4119) · 7936e2ed
Rhett Ying authored Jun 14, 2022

7936e2ed

[Dataset] Add Flickr and Yelp dataset (#4099) · defa292b

RecLusIve-F authored Jun 14, 2022



* Add Flickr and Yelp dataset

* Update flickr.py

* update

* Update yelp.py

* Update yelp.py

* update

* Update yelp.py

* Update test_data.py

* Update yelp.py

* update

* Update test_data.py

* Update yelp.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

defa292b

[Dist] master port should be fixed for all trainers (#4108) · 9501ed6a
Rhett Ying authored Jun 14, 2022
```
* [Dist] master port should be fixed for all trainers

* add tests for tools/launch.py
```
9501ed6a

12 Jun, 2022 2 commits

[dataset] Add a `reorder` flag to builtin datasets (#4104) · 92e77330

Huarui HE authored Jun 12, 2022



* add argument reorder=False for citation_graph

* add description of the argument reorder

* add reordered/un_reordered save_path

* add version number postfix
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

92e77330

Update README.md (#4105) · 148575e4
Quan (Andy) Gan authored Jun 12, 2022

148575e4

11 Jun, 2022 1 commit

[Fix] Wrap all CUDA runtime API/CUB calls with macro (#4083) · 60b1c992

Xin Yao authored Jun 11, 2022



* Wrap all CUDA runtime API/CUB calls with macro

* remove the usage of explicit cudaMalloc in favor of AllocWorkspace

* fix typo
Co-authored-by: Israt Nisa <neesha295@gmail.com>

60b1c992

09 Jun, 2022 3 commits
- [Dist] avoid busy ssh connection (#4096) · 966d1aa8
  Rhett Ying authored Jun 09, 2022
  
  966d1aa8
- disable multiple groups tests due to random failure in CI (#4101) · abcc9cce
  Rhett Ying authored Jun 09, 2022
  
  abcc9cce
- [Bugfix] Fix example case: examples/pytorch/ogb/ogbn-proteins and... · 549df65a
  Chang Liu authored Jun 09, 2022
```
[Bugfix] Fix example case: examples/pytorch/ogb/ogbn-proteins and examples/pytorch/ogb/ogbn-products (#4080)

* [Bugfix] Fix ogbn-gat-proteins/products examples

* Remove unused BatchSampler definition

* Remove comments to ease reading/reviewing

* Remove dataloader wrapper
```
  549df65a
08 Jun, 2022 4 commits
- [Dist] enable time out when fetching msg (#4043) · cac3720b
  Rhett Ying authored Jun 08, 2022
```
* [ist] enable time out when fetching msg

* fix lint error

* minor refinements

* improve minor log

* fix dist test

* fix timeout issue in tensorpipe
```
  cac3720b
- [DistTest] add python test of RPC (#4093) · 2de80dde
  Rhett Ying authored Jun 08, 2022
```
* [DistTest] add python test of RPC

* remove return
```
  2de80dde
- [DistTest] add basic pipeline for dist test across machines (#3984) · c1ff4c9b
  Rhett Ying authored Jun 08, 2022
```
* [DistTest] add basic pipeline for dist test across machines

* move launch remote cmd to separate file

* add test for rpc

* fix function naming rule
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  c1ff4c9b
- [Bug] Fixed missing dgl.transforms.functional __all__ entries (#4089) · d92a4e8b
  ndickson-nvidia authored Jun 07, 2022
  
  d92a4e8b
07 Jun, 2022 2 commits

[Bug][Feature] Added cublasGemm<__half> specialization (#3988) (#4029) · eabcc58e

ndickson-nvidia authored Jun 07, 2022

* * Added specialization of cublasGemm function for `__half` type, to try to address https://github.com/dmlc/dgl/issues/3988



* * Added USE_FP16 guard

* * Added test cases to test_segment_mm, to test newly-added FP16 specialization of cublasGemm

* * Replaced for loop in test_segment_mm with pytest.mark.parametrize, as recommended
Co-authored-by: Xin Yao <xiny@nvidia.com>

eabcc58e

[Doc] Update link to correct destination. (#3966) · 85c2ff71

Tudor Andrei Dumitrascu authored Jun 07, 2022



* Update link to correct destination.

* Update 4_rgcn.py

* Update 4_rgcn.py

* Update tutorials/models/1_gnn/4_rgcn.py

* Update tutorials/models/1_gnn/4_rgcn.py

* Update tutorials/models/1_gnn/4_rgcn.py
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

85c2ff71

06 Jun, 2022 3 commits

[Bug] Added common operations for FP16 on older GPUs (#4079) · ea44da50

ndickson-nvidia authored Jun 06, 2022

* * Added support for common operations on FP16 (`half` or `__half`) for older GPU architectures
* Fixed an issue with previous check for FP16 support

* * Removing FP16 type checks, since they should no longer be needed

* * Fixed AtomicAdd to be atomic for `float` and `double` for old GPU architectures.  Unfortunately, it seems that atomicCAS for unsigned short seems to be unavailable until architecture 70, so half will have to stay non-atomic on old GPUs.

* * Fixed non-atomic version of `AtomicAdd<half>` for older GPUs to return old value instead value of new

ea44da50

parallelize csr2coo (#4081) · 31a81438
Quan (Andy) Gan authored Jun 06, 2022
```
Co-authored-by: Xin Yao <xiny@nvidia.com>
```
31a81438

wrap all cuda kernel calls with macro (#4066) · 6014623d

Xin Yao authored Jun 06, 2022


Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>
Co-authored-by: Israt Nisa <neesha295@gmail.com>

6014623d

04 Jun, 2022 3 commits

[Example] Remove Bias in Linear layer because of BatchNorm1d usage (#4071) · a3ea4873

Sai Kandregula authored Jun 04, 2022



* typo fix in TUDataset docs

* remove bias in Linear layer because of BatchNorm1d
Co-authored-by: decoherencer <decoherencer@users.noreply.github.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

a3ea4873

[DGL-Go] Graph Property Prediction Pipeline (#3927) · 6a91d181

Mufei Li authored Jun 04, 2022



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* lr_scheduler

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Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

6a91d181

[Bugfix] Fix GCMC examples (#4082) · d31448dd

Chang Liu authored Jun 03, 2022

* [Example][Bug] Fix GCMC examples

* Revert the change of model.py from #74f01405

d31448dd

03 Jun, 2022 3 commits

[Example] Add BGRL example (#4077) · 0f2ff47d

RecLusIve-F authored Jun 03, 2022

* Add BGRL example

* Update README.md

* Update utils.py

* Update

* Update utils.py

0f2ff47d

typo fix in TUDataset docs (#4056) · c9c79b44

Sai Kandregula authored Jun 03, 2022


Co-authored-by: decoherencer <decoherencer@users.noreply.github.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

c9c79b44

[NN] Enhance EGATConv branch (#4062) · efd909e6

Riju Mukherjee authored Jun 03, 2022



* enhance EGATConv| nfeats as tuples

* egatconv modified for bipartite graphs

* modified docstrings

* added/modified unittests for EGATConv

* Update egatconv.py

* rectified lint errors
Co-authored-by: rijulizer <riju.mukherjee@gmail.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

efd909e6

02 Jun, 2022 4 commits

fix indent in minibatch-custom-sampler.rst (#4063) · 92063d88
Xin Zhang authored Jun 03, 2022
```
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
```
92063d88

[Dataset] Add WikiCS Dataset (#4035) · 89655cfd

RecLusIve-F authored Jun 02, 2022



* Fix bugs & Update dataset

* Update

* Update wikics.py

* Update wikics.py

* Update test_data.py

* Update wikics.py

* Update wikics.py

* Update wikics.py

* update

* Update module.py

* Update dgl.data.rst

* Update wikics.py

* Update wikics.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

89655cfd

[Bugfix] Fix cluster-gat examples (#4068) · 9e46423e
Chang Liu authored Jun 02, 2022
```
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
```
9e46423e
[Data] AsGraphPredDataset (#4073) · d9c25521
Mufei Li authored Jun 02, 2022
```
* Update

* CI

* Update

* Update

* Fix

* Fix
```
d9c25521