GitLab

Signed-off-by: Serge Panev <spanev@nvidia.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* fix

* oops
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

refactor CI report and log

* fix docs

* remove

* oh

* fix

* add eges example

* remove csv files and add data link

* Update README.md

* Update main.py

* Update model.py

* Update sampler.py

* Update utils.py

* Update model.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* enable UVA sampling with CPU indices

* add docs

* add more docs

* lint

* fix

* fix

* better error message

* use mp.Barrier instead of queues

* revert

* revert

* oops

* revert dgl.multiprocessing.spawn

* Update pytorch.py

* cleaned pl node classification example

* conform to PL's method of updating the dataloader

* update

* lint

* fix test

* fix

* Add failing unit test

* Fix negative sampler edge types

* fix test

* oops

* revert
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

Signed-off-by: Serge Panev <spanev@nvidia.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* enable uva for pinsage sampler

* unit test

* modify some checks on the python side

* remove legacy random walk code

* update unit test

* update unit test

* fix unit test

* adjust checks

* move some checks to c++

* move max_nodes check to cuda kernel

* fix ci for tf
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>

* fix device = none to cpu.

* fix singleton-comparison

* modify device is none

* fix use uva

* add docs

* add edge dataloader

* add doc

* fix trailing-whitespace

* modify default
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Update README.md

* Update README.md

* Update README.md
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

* [BugFix] record/restore pin status when pickle/unpickle

* disable test on TF

* set version as expected

* unpin memory in test

* add EGNN & PNA

* fix egnn issues

* fix pna issues

* update pna conv

* add doc strings

* update pnaconv

* fix unused args issue

* fix moment aggregation issue
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

[Examples] Update graphsage multi-gpu example to use mutliple GPUs for validation and testing. (#3827)

* Update graphsage multi-gpu example to use mutliple GPUs for validation and
testing.

* Remove argmax

* Fix rebase error

* Add more documentation to example and simplify

* Switch to name shared memory

* Add comment about how training is distributed

* Restore iteration count

* fix munmap error reporting for better error messages
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update graphsaint.py

* Update graphsaint.py

* fix uva with partial node types

* lint

* skip tensorflow unit test

* Make compatible for system where the default is python2

* Update cmakelists with find package

* Switch to find_program
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* radius graph

* remove trailing whitespaces from docs

* disable invalid name for transform func

* disable radius graph module invalid name

* move pylint disable before init

* fix missing nodes from point set

* update docs indexing

* add compute mode as optional param

* radius graph test

* remove trailing whitespaces

* fix precision when comparing tensors
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [Transform] Random Walk Positional Encoding & Laplacian Positional Encoding

* Update python/dgl/transforms/module.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/transforms/functional.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/transforms/functional.py & python/dgl/transforms/module.py

* update python/dgl/transforms/functional.py

* update doc indexing

* update unit test

* support weighted graphs for random_walk_pe

* change reference

* fix linter errors

* fix datatype compatibility with MXNet & TF

* fix device errors

* fix result precision errors

* change tensorflow abs api

* reboost CI
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* involve indices_devices for other dataset object.

* modify raise error when device not found.

* remove empty line

* fix line too long

* upd

* upd

* upd

* upd

* upd

* fix OpenMP compatibility issues

* typo

* partition

* misc

* fix typo

* num_parts=1

* import torch

* long

* print info

* print info

* print info

* upd

* remove debug code

* revert partition.py

* fix cut count

* fix cut count

* Revert "fix cut count"

This reverts commit 10926b4fd48f45c8f1ddb58be7db6c22e653effd.

* Revert "fix cut count"

This reverts commit 76465283bef093a2b4209ad70dd15d2437b2ec8a.

* type of deprecate

* typo in deprecate info

* fix typo

* use cv for partitioning

* CE

* no message

* revert

* typo

* add objtype

* no message

* fix bug

* fix bug

* fix bug

* ?

* semicolon

* drop tensors

* no message

* backward

* backward

* max op

* store X.shape

* th

* test

* Revert "test"

This reverts commit 92b3b2f64a3a1128590098fa03ce429c5466e6ce.

* test

* tolist

* debug

* to cuda

* tuple

* fix bug

* remove X

* no message

* fix bug

* workload balance

* Revert "workload balance"

This reverts commit d7f8e4a16ba2a7eabb4a9bb945523bfe6623e723.

* reverse

* Revert "reverse"

This reverts commit 8a71cf25685aa7d889b9b8881b46f7a16b7d6e6d.

* Revert "Revert "reverse""

This reverts commit 196b143932d5cf9813576ece7c990b63d322d063.

* Revert "Revert "Revert "reverse"""

This reverts commit cf9e89a07013582056e7cde235e51331aca7fa9c.

* no message

* Merge commit '5498cf05'

# Conflicts:
#	python/dgl/distributed/partition.py

* Revert "Merge commit '5498cf05

'"

This reverts commit f79be2ad777897c7025b28308454cad81ad6bb27.

* fix bug

* third party

* no message

* try to avoid memory leak

* try to avoid memory leak

* avoid memory leak with no hope

* Revert "avoid memory leak with no hope"

This reverts commit c77befe9479f46758e744642f66dd209b50eef7d.

* no message

* Revert "no message"

This reverts commit 478cb28fe25fb1002b2f1dc202bb9bdaad8b2a56.

* del

* Revert "del"

This reverts commit 1b468e45ce646b400ff3ffa61a0b2da058b3bdfd.

* no message

* no message

* Revert "no message"

This reverts commit 92e4f5561ed42da0606618b2fff9f1ad5ed439d9.

* third party

* document

* Update metis_partition.cc

* Update metis_partition_hetero.cc

* Update metis_partition_hetero.cc

* Update partition.py

* Update partition.py

* Update partition.py
Co-authored-by: yzh119 <expye@outlook.com>
Co-authored-by: chwan-rice <54331508+chwan-rice@users.noreply.github.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* wip: dataloading doc

* update dataloading package doc and many others

* lint

* gat layers fix

* minor bug
Co-authored-by: decoherencer <decoherencer@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* fix

* unit test

fix #3812
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* fix distributed multi-GPU example device

* try Join

* update version requirement in README

* use model.join

* fix docs
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* fix uva sampling with features

* fix

* add is_listlike function to distinguish strings from sequence

* fix
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>

* fix

* remove setcxx methods

* move pin flag to CSR and COO matrix
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* get_attention parameter in GlobalAttentionPooling

* removed trailing whitespace

* lint fix
Co-authored-by: decoherencer <decoherencer@users.noreply.github.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* fix multi-gpu rgcn example

* remove dgl.multiprocessing in turorials

* add a comment
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>