Commits · 75ffc31f7632253d45807e3c321f956e6f48364d · OpenDAS / dgl

"src/vscode:/vscode.git/clone" did not exist on "a487b5095a135dc052327812ba38c34731c05b16"

18 Aug, 2020 12 commits

[Doc] Update the docstring of distributed APIs. (#2025) · 75ffc31f

Da Zheng authored Aug 18, 2020



* add doc.

* update DistGraph.

* add DistTensor.

* update DistEmbedding.

* add partition.py

* add sampling.

* fix.

* add graph partition book and create a base class.

* fix test.

* add rst.

* update doc rst.

* update.

* fix.

* fix docs

* update distributed tensor and embeddings.

* add checks.

* update DistGraph.

* update initialization.

* fix graph partition book.

* update graph partition book.

* update partition.

* update partition.

* fix.

* add example code.

* update DistGraph

* Update python/dgl/distributed/dist_context.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_context.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* update initialize.

* update dataloader.

* update distgraph.

* update DistGraph.

* update DistTensor.

* update.

* more updates.

* fix lint.

* add num_nodes and num_edges
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

75ffc31f

Fix mxnet gin (#2048) · 3d654843
xiang song(charlie.song) authored Aug 19, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
3d654843
[NN] [Doc] Fix nn api doc (#2047) · 65866989
Tianjun Xiao authored Aug 18, 2020
```
* fix mxnet nn doc and no note on chebconv

* change notes to note to highlight
```
65866989
[Convert] Reserve node/edge IDs in to_heterogeneous (#2045) · dacc7afe
Mufei Li authored Aug 18, 2020
```
* Fix

* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
```
dacc7afe
[Feature] Change the Default Value of transpose in DGLGraph.adj (#2046) · 9088c635
Mufei Li authored Aug 18, 2020
```
* Update adj

* Fix
```
9088c635
[Feature] Make sample_neighbors copy features on demand (#2042) · edfbee2c
Quan (Andy) Gan authored Aug 18, 2020
```
* fix

* fix

* lint

* fix

* test

* fix

* fix
```
edfbee2c

[Example] rm gcn spmv (#2044) · 09ec6020

xiang song(charlie.song) authored Aug 18, 2020



* rm gcn spmv

* remove useless test

* remove useless test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

09ec6020

upd (#2043) · 6d346281
Zihao Ye authored Aug 18, 2020

6d346281
remove kvstore example which is not maintianed and is out of date (#2041) · 1a1f38e3
xiang song(charlie.song) authored Aug 18, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
1a1f38e3
[Model] use dask to parallelize preprocessing (#2040) · 6367318f
Quan (Andy) Gan authored Aug 18, 2020

6367318f
[Test] Remove Test for metapath_random_walk (#2039) · 47c96dd1
Mufei Li authored Aug 18, 2020
```
* Update test_randomwalk.py

* Update test_randomwalk.py
```
47c96dd1

[Bugfix] Fix batching isolated node types (#2035) · aa19df1b

Quan (Andy) Gan authored Aug 18, 2020



* [Bugfix] Fix batching isolated ntypes

* fix test

* remove test.py
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

aa19df1b

17 Aug, 2020 11 commits

[Doc/Feature] Refactor, doc update and behavior fix for graphs (#1983) · be444e52

Mufei Li authored Aug 18, 2020



* Update graph

* Fix for dgl.graph

* from_scipy

* Replace canonical_etypes with relations

* from_networkx

* Update for hetero_from_relations

* Roll back the change of canonical_etypes to relations

* heterograph

* bipartite

* Update doc

* Fix lint

* Fix lint

* Fix test cases

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix test

* Fix

* Update

* Use DGLError

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* rewrite sanity checks

* delete unnecessary checks

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Update

* Fix

* Update

* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

be444e52

[NN] Add ChebConv for Tensorflow (#2038) · 0afc3cf8
Jinjing Zhou authored Aug 17, 2020
```
* add chebconv

* fix

* lint

* fix lint

* docs
```
0afc3cf8

[Bugfix] fix vocab not saved bug in SSTDataset (#2036) · b3538802

Xiangkun Hu authored Aug 17, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* Update tree.py

b3538802

[Doc] split docs to multiple rst files (#2037) · 5cb57593
Minjie Wang authored Aug 17, 2020

5cb57593
disable batching blocks (#2034) · a8b27b47
Quan (Andy) Gan authored Aug 17, 2020

a8b27b47

[Doc] Move image in dataset User guide to s3 server (#2033) · a9c4df67

Xiangkun Hu authored Aug 17, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

a9c4df67

[Doc] API Doc update for mxnet and tf, remove some degree check (#2028) · b1e69105

Tianjun Xiao authored Aug 17, 2020

* mx tf relconv

* use method instead of private attr

* src and dst have different fc for gat

* update edgeconv

* change sage and sgconv

* no degree check on gin

* add remainding API doc

* fix pylint

* infer fc_src and fc_dst, only one tensor for block

* fix pytest

b1e69105

[Doc] fix inconsistencies in minibatch user guide (#2032) · 4f1da61b
Quan (Andy) Gan authored Aug 17, 2020

4f1da61b

[Fix] Update libinfo.py (#1830) · e291f503

max yue authored Aug 17, 2020



* Update libinfo.py

fix `if search_path is list` error, and improve the code.

* change string format for compatibility with py35

change string format

* Update libinfo.py

* Update libinfo.py
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

e291f503

[NN][Fix] fix some random test (#2031) · b8a4b446
Tianjun Xiao authored Aug 17, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
b8a4b446
[Doc] User guide section 5 and 6 (#2029) · 1f7b2195
Quan (Andy) Gan authored Aug 17, 2020
```
* [Doc] User guide section 5 and 6

* oops

* fix
```
1f7b2195

15 Aug, 2020 2 commits

only filling zeros for min/max reducer (#2026) · 2fc280ba
Zihao Ye authored Aug 15, 2020

2fc280ba

[Doc] Modify the link of save_graphs and load_graphs in dataset user guide (#2027) · 62e69b67

Xiangkun Hu authored Aug 15, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

62e69b67

14 Aug, 2020 9 commits

[WIP][Kernel] Set the built-in reduce result of zero-degree nodes to 0 in C (#2017) · 63e2ba23

Quan (Andy) Gan authored Aug 14, 2020



* test idea

* cuda kernels

* lint and fixes

* lint

* change to another strategy

* use infinity

* fix
Co-authored-by: Zihao Ye <expye@outlook.com>

63e2ba23

Update dgl.rst (#2020) · de2e608b
Jinjing Zhou authored Aug 14, 2020

de2e608b

[Doc] new nn api doc (#2019) · 2fa7f71a

zhjwy9343 authored Aug 14, 2020



* Add dotproduct attention

* [Feature] Add dotproduct attention

* [Feature] Add dotproduct attention

* [Feature] Add dotproduct attention

* [New] Update landing page

* [New] Update landing page

* [New] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Doc] Update landing page

* [Improvement] use dgl build-in in dotgatconv

* [Doc] review API doc string bottom up

* [Doc] Add doc of input and output features

* [Doc] Update doc string for pooling and transformer.

* [Doc] Reformat doc string and change some wordings.

* [Doc] Doc string refactoring.

* [Doc] Doc string refactoring.

* [Doc] Doc string refactoring.

* [Doc] Doc string refactoring.

* [Doc] Doc string refactoring.
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

2fa7f71a

[Doc] Update links by :ref in dataset user guide (#2024) · f4f78803

Xiangkun Hu authored Aug 14, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

f4f78803

Fix hang when sending empty ndarray in rpc request (#2022) · 1f5f31ce

Jinjing Zhou authored Aug 14, 2020

* aaa

* revert

* 111

* fix

* fff

* 111

* try

* debug

* fff

* 111

* 1111

* fix

* try

* 111

* 111

* print

* f

* 111

* revert

* fix

* revert

* add timeout

* Revert "add timeout"

This reverts commit fb34f67f11ad6556824daa6efa29a6ec2c7c1d3e.

1f5f31ce

Update dgl_dataset.py (#2021) · c113a5a0
flyingcat authored Aug 14, 2020

c113a5a0
[Distributed] Fix bugs (#2009) · efa95d86
Da Zheng authored Aug 13, 2020
```
* fix.

* add tests.

* fix.

* fix.
```
efa95d86

[Distributed] support distributed sampling in NodeDataLoader (#2012) · 1ad46fd0

Da Zheng authored Aug 13, 2020

* fix.

* doesn't support EdgeDataLoader

* add test.

* fix.

* fix test.

* catch errors in the test.

* fix.

* fix error message

* add print.

* join the server processes.

* update test.

* fix test.

1ad46fd0

[Doc] Image in dataset user guide (#2018) · fe121c63

Xiangkun Hu authored Aug 14, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

fe121c63

13 Aug, 2020 5 commits

[Distributed] Fix memory leak in kvstore (#2016) · 15e3ff87
Chao Ma authored Aug 13, 2020
```
* Fix memory leak

* update

* update

* update

* update

* update

* update

* update
```
15e3ff87
[hotfix] Fix cuda illegal memory access error in SpMMCoo. (#2015) · e6f6ce27
Zihao Ye authored Aug 13, 2020
```
* up

* pylint

* upd
```
e6f6ce27
[hotfix] no in-degree check on sage (#2014) · 4672c022
Tianjun Xiao authored Aug 13, 2020
```
* no degre check on sage

* fix pytest

* no in degree check for heteroconv
```
4672c022

[Distributed] Copy training scripts in copy_partitions.py (#2010) · eb9c067b

Chao Ma authored Aug 13, 2020

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

eb9c067b

[Transform] Docstring and subframes (#1962) · cd484352

Quan (Andy) Gan authored Aug 13, 2020



* update knn graph docs

* more docs

* [Doc] transform module docstrings

* remove copy_ndata and copy_edata

* fix

* lint

* fix

* fix

* fix

* clean up docstrings

* fix docstring

* dtype specifications

* addresses comments

* fix
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

cd484352

12 Aug, 2020 1 commit
- [hotfix] Set reduce results to all zero for nodes with zero in-degrees. (#2011) · 6294677f
  Zihao Ye authored Aug 13, 2020
  
  6294677f