Commits · 6eda605ccd794156ab343c8904b04c7be15885c3 · OpenDAS / dgl

07 Nov, 2020 1 commit

[BugFix][Dataloading] Disable AsyncTransferer copying to anywhere but the GPU (#2323) · 6eda605c

nv-dlasalle authored Nov 07, 2020



* Disable copying for anywhere but the GPU

* Remove unused import and remove references to transferring from the GPU from the docs

* Skip gpu test in cpu mode
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

6eda605c

02 Nov, 2020 1 commit
- [Doc][Dataloading] Expand documentation of AsyncTransferer (#2313) · d453d72d
  nv-dlasalle authored Nov 02, 2020
```
* Update docs

* Make non-default streams non-blocking
```
  d453d72d
30 Oct, 2020 1 commit

[Dataloading] Add class for copying tensors to/from the GPU on a non-default stream (#2284) · f673fc25

nv-dlasalle authored Oct 30, 2020

* Add async transferer class

* Add async ndarray copy interface

* Add python bindings

* Fix comment

* Add python class

* Fix linting issues

* Add python unit test

* Update python interface

* move async_transferer to cuda only directory

* Fix linting issue

* Move out of contrib

* Add doc strings

* Move test compute from backend

* Update comment

* Fix test naming

* Fix argument usage

* Wrap/unwrap backend parameters

* Move to dataloading

* Move to 'dataloading'

* Make GPU/CPU compatible

* Fix unit tests

* Add docs

* Use only backend interface for datamovement in unit test

f673fc25

21 Oct, 2020 1 commit
- [Doc] Same typos as 0.5.x (#2292) · 38b3d0c4
  Seung-woo Seo authored Oct 22, 2020
```
Some of SAGEGraph equation has typos.
```
  38b3d0c4
01 Oct, 2020 1 commit
- Update index.rst (#2254) · 1cb210c8
  Mufei Li authored Oct 01, 2020
  
  1cb210c8
30 Sep, 2020 1 commit

[Doc] Chinese User Guide chapter1 (#2240) · 808a3676

zhjwy9343 authored Sep 30, 2020



* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Fix] Add random

* [Bug] Fix batch norm error

* [Doc] Test with CN in Sphinx

* [Doc] Test with CN in Sphinx

* [Doc] Remove the test CN docs.

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Doc] fill readme with new performance results

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chines User Guide

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* Update README.md

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* [Fix] Temporary remove compgcn

* [Doc] Add Chines User Guide

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] user guide cn chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Finalize CN user guide chapter 1

* [Doc] Add CN link in user guide chapter 1

* update hash in 3rd party

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* [Fix] copyedit some errors

* Update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

808a3676

27 Sep, 2020 2 commits
- Update message-efficient.rst (#2247) · ee9093f5
  Mufei Li authored Sep 27, 2020
  
  ee9093f5
- [Doc] fix minibatch user guide broken code (#2233) · 6bc92068
  Quan (Andy) Gan authored Sep 27, 2020
  
  6bc92068
23 Sep, 2020 1 commit

Update (#2225) · 7e0107c3

Mufei Li authored Sep 23, 2020


Co-authored-by: Ubuntu <ubuntu@ip-172-31-52-53.us-west-2.compute.internal>

7e0107c3

21 Sep, 2020 1 commit
- Update dgl.data.rst (#2217) · 7a6d6668
  Mufei Li authored Sep 21, 2020
  
  7a6d6668
20 Sep, 2020 1 commit

Master refactor split chapter2n3 (#2215) · 90d86fcb

zhjwy9343 authored Sep 20, 2020



* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Feature] Add full graph training with dgl built-in dataset.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Bug] fix model to cuda.

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Feature] Add test loss and accuracy

* [Fix] Add random

* [Bug] Fix batch norm error

* [Doc] Test with CN in Sphinx

* [Doc] Test with CN in Sphinx

* [Doc] Remove the test CN docs.

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Feature] Add input embedding layer

* [Doc] fill readme with new performance results

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Add Chinese User Guide, graph and 1.5

* [Doc] Refactor and split chapter 4

* [Fix] Remove CompGCN example codes

* [Doc] Add chapter 2 refactor and split

* [Fix] code format of savenload

* [Doc] Split chapter 3

* [Doc] Add introduction phrase of chapter 2

* [Doc] Add introduction phrase of chapter 2

* [Doc] Add introduction phrase of chapter 3

* Fix

* Update chapter 2

* Update chapter 3

* Update chapter 4
Co-authored-by: mufeili <mufeili1996@gmail.com>

90d86fcb

17 Sep, 2020 1 commit

[bug][doc] Fix bug in batched heterograph training documentation (#2204) · 2fbffd31

Quan (Andy) Gan authored Sep 17, 2020



* [bug][doc] Fix bug in batched heterograph training documentation

* added references of "above" with hyperlinks

* address comments

* fix API doc on EdgeDataLoader
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

2fbffd31

16 Sep, 2020 1 commit

[Doc and User Guide] Minor Fix (#2205) · f3f646bb

Mufei Li authored Sep 17, 2020



* Fix doc and user guide

* Update heterograph.py
Co-authored-by: Ubuntu <ubuntu@ip-172-31-13-9.us-west-2.compute.internal>

f3f646bb

15 Sep, 2020 1 commit
- [Doc]fix link in message passing doc (#2200) · 233e8198
  Tianjun Xiao authored Sep 15, 2020
```
* fix link in message passing doc

* more specific link
```
  233e8198
12 Sep, 2020 3 commits
- [Doc] Update Doc for UDFs (#2131) · 877101a9
  Mufei Li authored Sep 13, 2020
```
* Update Doc for UDFs

* add degree bucketing explanation

* Update udf.rst

* Update
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
```
  877101a9
- fix typo (#2185) · 5e9d2889
  Quan (Andy) Gan authored Sep 13, 2020
```
Co-authored-by: Zihao Ye <expye@outlook.com>
```
  5e9d2889
- Fix `create_format_` to `create_formats` (#2184) · 0afacfb8
  Jinjing Zhou authored Sep 12, 2020
```
* Update dgl.DGLGraph.rst

* Update gcn.py
```
  0afacfb8
11 Sep, 2020 1 commit
- [Doc] Fix typo in dataloading.negative_sampler (#2177) · 4dae26a1
  Quan (Andy) Gan authored Sep 11, 2020
```
* fix dataloading docs

* fix another
```
  4dae26a1
29 Aug, 2020 2 commits
- rename create_format_ to create_formats_ (#2126) · 9eaace92
  Quan (Andy) Gan authored Aug 29, 2020
  
  9eaace92
- new code block style (#2113) · 745078e7
  Quan (Andy) Gan authored Aug 29, 2020
```
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
```
  745078e7
28 Aug, 2020 1 commit
- Update docs (#2123) · 4125f63e
  Jinjing Zhou authored Aug 28, 2020
```
* Remove SSE

* Update env_var.rst
```
  4125f63e
27 Aug, 2020 1 commit

[User Guide] Update distributed training code (#2114) · 2a107320

Chao Ma authored Aug 27, 2020

* check num_workers

* update

* update

* update

* update

* update

* update

* update user guide

2a107320

23 Aug, 2020 3 commits
- upd (#2097) · 5bc029b9
  Zihao Ye authored Aug 23, 2020
  
  5bc029b9
- Update dgl.DGLGraph.rst · 163398c0
  Minjie Wang authored Aug 23, 2020
  
  163398c0
- [Dco] Remove preface in guide (#2096) · bcff14cc
  Minjie Wang authored Aug 23, 2020
```
* fix

* fix
```
  bcff14cc
21 Aug, 2020 4 commits

[Doc] Add user guide of distributed training. (#2091) · f86a8258
Da Zheng authored Aug 21, 2020
```
* distributed APIs.

* add guide.

* add index.
```
f86a8258
[Doc] [NN] Fix message and nn user guide link (#2090) · 7ead28c3
Tianjun Xiao authored Aug 22, 2020
```
* fix user guide link

* some fix on tensorflow
```
7ead28c3

[Doc] Fix links and references in dataset user guide (#2085) · 6f26cfca

Xiangkun Hu authored Aug 21, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

* fix links and ref

6f26cfca

[User Guide] Split the Graph Chapter into Multiple RST Files (#2081) · 6d212983
Mufei Li authored Aug 21, 2020
```
* Graph chapter, user guide

* Split

* Update
```
6d212983

20 Aug, 2020 3 commits

[Doc] Scan the API docs and make many changes (#2080) · f13b9b62

Minjie Wang authored Aug 20, 2020



* WIP: api

* dgl.sampling, dgl.data

* dgl.sampling; dgl.dataloading

* sampling packages

* convert

* subgraph

* deprecate

* subgraph APIs

* All docstrings for convert/subgraph/transform

* almost all funcs under dgl namespace

* WIP: DGLGraph

* done graph query

* message passing functions

* lint

* fix merge error

* fix test

* lint

* fix
Co-authored-by: Quan Gan <coin2028@hotmail.com>

f13b9b62

Graph chapter, user guide (#2078) · debfd4bf
Mufei Li authored Aug 20, 2020

debfd4bf
Fix docs (#2073) · ef78d675
Jinjing Zhou authored Aug 20, 2020
```
* remove mxnet tutorial

* remove sse

* fix docs
```
ef78d675

19 Aug, 2020 1 commit
- [Distributed] Some small fixes on doc (#2049) · 9da1629c
  Da Zheng authored Aug 18, 2020
```
* quick fix.

* update sparse optimizer.

* fix.

* fix
```
  9da1629c
18 Aug, 2020 2 commits

[Doc] Update the docstring of distributed APIs. (#2025) · 75ffc31f

Da Zheng authored Aug 18, 2020



* add doc.

* update DistGraph.

* add DistTensor.

* update DistEmbedding.

* add partition.py

* add sampling.

* fix.

* add graph partition book and create a base class.

* fix test.

* add rst.

* update doc rst.

* update.

* fix.

* fix docs

* update distributed tensor and embeddings.

* add checks.

* update DistGraph.

* update initialization.

* fix graph partition book.

* update graph partition book.

* update partition.

* update partition.

* fix.

* add example code.

* update DistGraph

* Update python/dgl/distributed/dist_context.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_context.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* update initialize.

* update dataloader.

* update distgraph.

* update DistGraph.

* update DistTensor.

* update.

* more updates.

* fix lint.

* add num_nodes and num_edges
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

75ffc31f

[NN] [Doc] Fix nn api doc (#2047) · 65866989
Tianjun Xiao authored Aug 18, 2020
```
* fix mxnet nn doc and no note on chebconv

* change notes to note to highlight
```
65866989

17 Aug, 2020 5 commits

[Doc/Feature] Refactor, doc update and behavior fix for graphs (#1983) · be444e52

Mufei Li authored Aug 18, 2020



* Update graph

* Fix for dgl.graph

* from_scipy

* Replace canonical_etypes with relations

* from_networkx

* Update for hetero_from_relations

* Roll back the change of canonical_etypes to relations

* heterograph

* bipartite

* Update doc

* Fix lint

* Fix lint

* Fix test cases

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix test

* Fix

* Update

* Use DGLError

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* rewrite sanity checks

* delete unnecessary checks

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Update

* Fix

* Update

* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

be444e52

[NN] Add ChebConv for Tensorflow (#2038) · 0afc3cf8
Jinjing Zhou authored Aug 17, 2020
```
* add chebconv

* fix

* lint

* fix lint

* docs
```
0afc3cf8
[Doc] split docs to multiple rst files (#2037) · 5cb57593
Minjie Wang authored Aug 17, 2020

5cb57593

[Doc] Move image in dataset User guide to s3 server (#2033) · a9c4df67

Xiangkun Hu authored Aug 17, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

a9c4df67

[Doc] fix inconsistencies in minibatch user guide (#2032) · 4f1da61b
Quan (Andy) Gan authored Aug 17, 2020

4f1da61b