GitLab

* Turn to official dlpack

* fix

* fix

In the previous code, the same vector was being assigned to all the nodes in each graph.
`:` was used incorrectly assuming that only one row will be selected for each column but all rows were selected for each column.

* fix

* upd

* upd

* upd

* upd

* clone

* upd
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Add graph-partition-book

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* udpate

* fix lint

* update

* update

* update

* update

* update

* update

* update

* skip test on GPU

* update

* update

* update

* update

* update

* update

* update

* fix lint

* update

* update

* update

* update

* fix unittest

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* 111

* 111

* lint

* lint

* lint

* lint

* fix

* lint

* try

* fix

* lint

* lint

* test

* fix

* ttt

* test

* fix

* fix

* fix

* mxnet

* 111

* fix 64bits computation

* pylint

* roll back

* fix

* lint

* fix hetero_from_relations

* remove index_dtype in to_homo and to_hetero

* fix

* fix

* fix

* fix

* remove default

* fix

* lint

* fix

* fix error message

* fix error

* lint

* macro dispatch

* try

* lint

* remove nbits

* error message

* fix

* fix

* lint

* lint

* lint

* fix

* lint

* fix

* fix random walk

* lint

* lint

* fix

* fix

* fix

* lint

* fix

* lint
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* add test.

* move test code.

* remvoe unnecessary test.

* fix.

* turn on tests for TF.

* Revert "move test code."

This reverts commit e7b4f36395b2121a7be030bd4364a704d0e357bf.

* fix.

* fix.

* skip test for tensorflow.
Co-authored-by: Chao Ma <mctt90@gmail.com>

* Add an example for GATNE-T

* Update README.md

* Add links for datasets

* Update README.md with running results

* Update README.md

* Add comments

* Update main.py

* Remove node type name `user`
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* initial version from distributed training.

This is copied from multiprocessing training.

* modify for distributed training.

* it's runnable now.

* measure time in neighbor sampling.

* simplify neighbor sampling.

* fix a bug in distributed neighbor sampling.

* allow single-machine training.

* fix a bug.

* fix a bug.

* fix openmp.

* make some improvement.

* fix.

* add prepare in the sampler.

* prepare nodeflow async.

* fix a bug.

* get id.

* simplify the code.

* improve.

* fix partition.py

* fix the example.

* add more features.

* fix the example.

* allow one partition

* use distributed kvstore.

* do g2l map manually.

* fix commandline.

* a temp script to save reddit.

* fix pull_handler.

* add pytorch version.

* estimate the time for copying data.

* delete unused code.

* fix a bug.

* print id.

* fix a bug

* fix a bug

* fix a bug.

* remove redundent code.

* revert modify in sampler.

* fix temp script.

* remove pytorch version.

* fix.

* distributed training with pytorch.

* add distributed graph store.

* fix.

* add metis_partition_assignment.

* fix a few bugs in distributed graph store.

* fix test.

* fix bugs in distributed graph store.

* fix tests.

* remove code of defining DistGraphStore.

* fix partition.

* fix example.

* update run.sh.

* only read necessary node data.

* batching data fetch of multiple NodeFlows.

* simplify gcn.

* remove unnecessary code.

* use the new copy_from_kvstore.

* update training script.

* print time in graphsage.

* make distributed training runnable.

* use val_nid.

* fix train_sampling.

* add distributed training.

* add run.sh

* add more timing.

* fix a bug.

* save graph metadata when partition.

* create ndata and edata in distributed graph store.

* add timing in minibatch training of GraphSage.

* use pytorch distributed.

* add checks.

* fix a bug in global vs. local ids.

* remove fast pull

* fix a compile error.

* update and add new APIs.

* implement more methods in DistGraphStore.

* update more APIs.

* rename it to DistGraph.

* rename to DistTensor

* remove some unnecessary API.

* remove unnecessary files.

* revert changes in sampler.

* Revert "simplify gcn."

This reverts commit 0ed3a34ca714203a5b45240af71555d4227ce452.

* Revert "simplify neighbor sampling."

This reverts commit 551c72d20f05a029360ba97f312c7a7a578aacec.

* Revert "measure time in neighbor sampling."

This reverts commit 63ae80c7b402bb626e24acbbc8fdfe9fffd0bc64.

* Revert "add timing in minibatch training of GraphSage."

This reverts commit e59dc8957a414c7df5c316f51d78bce822bdef5e.

* Revert "fix train_sampling."

This reverts commit ea6aea9a4aabb8ba0ff63070aa51e7ca81536ad9.

* fix lint.

* add comments and small update.

* add more comments.

* add more unit tests and fix bugs.

* check the existence of shared-mem graph index.

* use new partitioned graph storage.

* fix bugs.

* print error in fast pull.

* fix lint

* fix a compile error.

* save absolute path after partitioning.

* small fixes in the example

* Revert "[kvstore] support any data type for init_data() (#1465)"

This reverts commit 87b6997b

.

* fix a bug.

* disable evaluation.

* Revert "Revert "[kvstore] support any data type for init_data() (#1465)""

This reverts commit f5b8039c6326eb73bad8287db3d30d93175e5bee.

* support set and init data.

* support set and init data.

* Revert "Revert "[kvstore] support any data type for init_data() (#1465)""

This reverts commit f5b8039c6326eb73bad8287db3d30d93175e5bee.

* fix bugs.

* fix unit test.

* move to dgl.distributed.

* fix lint.

* fix lint.

* remove local_nids.

* fix lint.

* fix test.

* remove train_dist.

* revert train_sampling.

* rename funcs.

* address comments.

* address comments.

Use NodeDataView/EdgeDataView to keep track of data.

* address comments.

* address comments.

* revert.

* save data with DGL serializer.

* use the right way of getting shape.

* fix lint.

* address comments.

* address comments.

* fix an error in mxnet.

* address comments.

* add edge_map.

* add more test and fix bugs.
Co-authored-by: Zheng <dzzhen@186590dc80ff.ant.amazon.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-6-131.us-east-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-26-167.us-east-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-250.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-30-135.us-west-2.compute.internal>

* fix get-shape

* update

* update

* update

* update

* update

* fix typo

* update

* update

* add functions

* fix litn

* add unit test

* fix

* fix

* fix

* fix

* support empty dict

* simplify logic

* Update tensor_serialize.py

* add clone function to frame

* add utest

* replace all local_var with local_scope

* fix utest

* avoid creating canonical types in __getitem__

* lint

* try another utest  appraoch for mx

* utest

* add bool to F.data_type_dict

* add utest

* skip bool test for mx

In order to make the `label2idx` dictionary, tensor values should be used and not the tensor itself.
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* shared memory history for multi-gpu training

* reorg
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* unsupervised graphsage first commit

* fix

* disable remove_edges and still got 0.90 performance

* optimize edgeids with multimap

* change hyperparams

* update README
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* add functions

* fix litn

* add unit test

* fix

* fix

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* update

* Update network.cc
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* control variate first commit

* bug fixes

* split to single and multi GPU

* update readme

* bugfix

* bugfix

* remove push

* bugfix on multi gpu

* update README
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* add init_data on client

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* fix lint

* update

* update

* update

* update

* update

* update

Co-authored-by: Ubuntu <ubuntu@ip-172-31-38-40.ec2.internal>

* support any data type for init_data

* update

* update

* fix

* fix mapping array for empty node set

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* featurize for weave model

* weave module for molecular graphs

* Update

* completed weave model

* update the whole weave model

* Update

* update atom (node) features

'

* "featurizer"

* Add files via upload

add edge featurizer

* Add files via upload

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update
Co-authored-by: mufeili <mufeili1996@gmail.com>

* gcmc example

* Update Readme

* Add multiprocess support

* Fix

* Multigpu + dataloader

* Delete some dead code

* Delete more

* upd

* Add README

* upd

* Upd

* combine full batch and sample GCMCLayer, use HeteroCov

* Fix

* Update Readme

* udp

* Fix typo

* Add cpu run

* some fix and docstring
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-71.ec2.internal>

* Update

* Update

* Update

* Update README.md

* Update README.md

* deprecate DGL-KE.

* Update README.md

* remove from CI.

* remove tests.
Co-authored-by: Zheng <dzzhen@3c22fb0ed81b.ant.amazon.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* fix

* fix

* fix

* fix

* fix

* 111

* fix

* fix

* fix

* test

* ff

* fix

* ff

* fix

* f

* merge

* fix

* simplify shared memory graph index.

* fix.

* remove edge_dir in SharedMemGraphStore.

* avoid creating shared-mem graph store with from_csr.

* simplify from_csr.

* add comments.

* fix lint.

* remove the test.

* fix compilation error.

* fix a bug.

* fix a bug.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal>

* Update doc and tutorials

* Fix