Commits · 65e7805e2265e9852b18286befc5004a0d836f3f · OpenDAS / dgl

20 Jul, 2020 1 commit

[KVStore] Support delete_data() api on client (#1824) · 65e7805e

Chao Ma authored Jul 20, 2020

* delete tensor

* update

* update

* update

* update

* update

* update

* udpate

* update

* update

* update

65e7805e

18 Jul, 2020 1 commit

[Distributed] Reduce memory consumption in graph partitioning (#1823) · ea420c0a

Da Zheng authored Jul 18, 2020



* save mem.

* save mem.

* reduce mem

* fix test

* fix lint

* fix test

* fix.

* fix.

* fix.

* fix.

* fix lint.

* fix backend operator.

* fix tensorflow operators.

* fix.

* revert change in mxnet operator.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>

ea420c0a

17 Jul, 2020 4 commits
- fix launch. (#1822) · 7645c660
  Da Zheng authored Jul 17, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
```
  7645c660
- [Distributed] Fix partition (#1821) · 20734637
  Da Zheng authored Jul 17, 2020
```
* fix partition and print timing.

* fix lint.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
```
  20734637
- fix (#1817) · df3683a2
  Quan (Andy) Gan authored Jul 17, 2020
  
  df3683a2
- [Example] Update Links for Supervised Community Detection with Graph Neural Networks (#1816) · 63feb47c
  Mufei Li authored Jul 17, 2020
```
* Update README.md

* Update README.txt
```
  63feb47c
16 Jul, 2020 1 commit

[Distributed] Distributed launching script (#1772) · ca9d3216

Chao Ma authored Jul 17, 2020



* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix launch script.
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

ca9d3216

15 Jul, 2020 4 commits

[Transfom] Add support for to_bidirected of heterogeneous graphs (#1793) · 0e92dad6

xiang song(charlie.song) authored Jul 15, 2020



* code

* joint_union

* joint union pass all test

* test case for test_transform

* upd

* lint

* lint

* Fix

* list

* Fix

* Fix

* update to_bidirected impl

* Fix

* Fix

* upd

* remove joint_union
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

0e92dad6

[CI] Update PyTorch in CI image to 1.5.1 (#1808) · 92321347
Jinjing Zhou authored Jul 15, 2020
```
* test

* Revert "test"

This reverts commit be555b06a9942a3267d173f4be760a04d33be227.

* change
```
92321347

[Distributed] add the standalone mode in DistGraph (#1800) · cda0abf7

Da Zheng authored Jul 14, 2020



* add standalone mode

* add comments.

* add tests for sampling.

* fix.

* make the code to run the standalone mode

* fix

* fix

* fix readme.

* fix.

* fix test
Co-authored-by: Chao Ma <mctt90@gmail.com>

cda0abf7

[Transform] New ToSimple API (#1789) · a5722d02

xiang song(charlie.song) authored Jul 15, 2020



* To simple

* lint

* upd

* more test

* fix

* Fix

* Fix

* add share edata

* doc

* Fix

* Fix

* Fix

* Fix

* lint

* lint

* Fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

a5722d02

14 Jul, 2020 2 commits
- [Distributed] Run distributed graph server inside DGL (#1801) · a1472bcf
  Da Zheng authored Jul 14, 2020
```
* run dist server in dgl.

* fix bugs.

* fix example.

* check environment variables and fix lint.

* fix lint
```
  a1472bcf
- relax (#1802) · be53add4
  Zihao Ye authored Jul 14, 2020
  
  be53add4
13 Jul, 2020 4 commits

[bugfix] Fix the deterministic of kernel test and add documentation. (#1799) · bc209bff
Zihao Ye authored Jul 14, 2020
```
* upd

* upd

* upd

* relax

* relax too

* upd
```
bc209bff

[Feature] Autograd of gspmm and gsddmm on PyTorch/MXNet/Tensorflow (#1680) · f25b1a06

Zihao Ye authored Jul 13, 2020

* init

* reverse(by minjie

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* gpu

* upd

* upd

* upd

* upd

* udp

* upd

* upd

* imidiot

* fix

* upd

* upd

* upd

* udp

* upd

* upd

* fix

* udp

* upd

* upd

* upd

* upd

* upd

* fix

* remove redundency

* upd

* upd

* upd

* cache

* upd

* upd

* upd

* upd

* upd

* udp

* upd

* trigger

* upd

* fix

* upd

* unused import

* upd

* upd

f25b1a06

fix batched heterograph serializations (#1794) · c13903bf
Quan (Andy) Gan authored Jul 13, 2020

c13903bf

[Transform] Reverse for heterogenous graph (#1784) · 200340ab

xiang song(charlie.song) authored Jul 13, 2020



* reverse

* Add more test

* Fix lint

* Fix

* move to transform

* upd

* upd

* upd

* Add more test

* lint

* Fix

* Fix doc

* Fix

* test

* doc

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

200340ab

12 Jul, 2020 1 commit
- Fix SAGEConv (#1792) · fb9d2138
  Mufei Li authored Jul 12, 2020
  
  fb9d2138
11 Jul, 2020 1 commit
- [Example] Fix HAN (#1790) · 7ea777e1
  Mufei Li authored Jul 11, 2020
```
* Fix

* Fix

* Fix
```
  7ea777e1
10 Jul, 2020 3 commits

[BugFix] Fix #1779 (#1781) · 8a183e3f

xiang song(charlie.song) authored Jul 10, 2020



* Fix bug #1779

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

8a183e3f

[Model][Hetero] HGT (#1778) · ac282a5e

Ziniu Hu authored Jul 10, 2020



* add HGT example

* Update README.md

* Update model.py

* Update train_acm.py

* Add comments
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

ac282a5e

[Kernel] Line graph with new Kernel (#1744) · 33330fcb

xiang song(charlie.song) authored Jul 10, 2020



* line graph

* update docstring

* Add test and compile OK

* Add python API

* Fix linty

* Fix

* Fix

* upd

* upd

* Fix

* merge

* Fix

* fix

* upd

* lint

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

33330fcb

09 Jul, 2020 5 commits

[BUGFIX] fix a bug in graph partitioning. (#1769) · 6a3685be

Da Zheng authored Jul 09, 2020

* fix

* use utils.toindex in the right place.

* fix.

* update tensor for mxnet backend.

* fix

* fix

6a3685be

[Windows] Compile METIS on Windows (#1771) · 22a6ad6d

Quan (Andy) Gan authored Jul 09, 2020



* make metis compilable on windows

* lint
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

22a6ad6d

Handle EINTR in TCP layer (#1766) · 83f71466

mszarma authored Jul 09, 2020



Added handling EINTR signal by
retrying when returned value and
errno are related to EINTR interrupt
error which my appear during tcp
function execution.
Added information about EAGAIN timeout
failure in accept stage.
Added printing out errno in logs.
Co-authored-by: Chao Ma <mctt90@gmail.com>

83f71466

[Kernel] Matrix Union (#1752) · 27cad329

xiang song(charlie.song) authored Jul 09, 2020



* Matrix union

* Pass test

* Fix lint

* return map for unionCOO/unionCSR

* Revert "return map for unionCOO/unionCSR"

This reverts commit 28e96c40f0659f02b33d88bcf528af6a6267726d.

* Update

* lint

* lint

* Fix doc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

27cad329

[Kernel] Matrix toSimple (#1756) · 29e6c93f

xiang song(charlie.song) authored Jul 09, 2020



* Matrix to simple

* Pass test

* new impl

* Fix test

* Fix lint

* trigger

* upd

* Fix comments
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

29e6c93f

08 Jul, 2020 1 commit

[Distributed] add in_subgraph on DistGraph. (#1755) · 167216af

Da Zheng authored Jul 08, 2020

* add in_subgraph on DistGraph.

* check in more.

* fix test.

* add comments.

* fix test.

* update test.

* update.

* rename.

* update comment

* fix test

167216af

07 Jul, 2020 1 commit
- [RPC] Client will retry connection until the server starts. (#1758) · bdc1e649
  Chao Ma authored Jul 07, 2020
```
* update

* update

* update
```
  bdc1e649
06 Jul, 2020 3 commits

RGCN minibatch using homogeneous graph. (#1745) · d6b4e286

xiang song(charlie.song) authored Jul 07, 2020



* minibatch rgcn

* minibatch based rgcn

* remove ogb

* lint

* Add sparse emb

* Fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-87-240.ec2.internal>

d6b4e286

[Distributed] fix init_data in kvstore. (#1750) · afb7f5b8

Da Zheng authored Jul 06, 2020



* fix

* fix.

* update.

* fix

* add assert
Co-authored-by: Chao Ma <mctt90@gmail.com>

afb7f5b8

[Model] Pinsage example that uses sparse embedding update (#1676) · 2f6ab43a
Quan (Andy) Gan authored Jul 06, 2020
```
* pinsage example that uses sparse embedding update

* add difference from paper
```
2f6ab43a

05 Jul, 2020 1 commit

[Aten] Add nonzero op (#1746) · 9cd0d3f8

Jinjing Zhou authored Jul 05, 2020



* add nonzero op

* 111

* fix doc
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

9cd0d3f8

04 Jul, 2020 2 commits

[Bug Fix] Fix Heterogenous graph save crash when some edge type names are identical. (#1751) · cc73c60c

xiang song(charlie.song) authored Jul 04, 2020



* Fix hetero serialize

* Add test case
y
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

cc73c60c

[Kernel]GraphOp::Reverse (#1730) · feabcabd

xiang song(charlie.song) authored Jul 04, 2020



* Compile OK

* Fix compile

* Explore reverse to heterograph_indx and add python test code

* lint

* Fix some bug

* Fix bug

* upd

* Fix

* fix lint

* Fix

* Fix

* test

* triger

* Fix

* upd

* add TODO

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Zihao Ye <expye@outlook.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

feabcabd

03 Jul, 2020 4 commits

[Feature] add sparse embedding. (#1497) · cadcc1c2

Da Zheng authored Jul 03, 2020

* add sparse embedding.

* fix

* add test.

* man fixes.

* many fixes

* fix sparse emb.

* fix.

* fix lint.

* fix lint.

* fix kvstore.

* expose DistTensor.

* test sparse embeddings.

* add attach_grad to the backends.

* remove part_id

* fix.

* move backward computation.

* move more computation to backend.

* fix a bug when applying learning rate.

* fix a few things.

* fix a few things.

* add docstring

* fix.

* apply no_grad.

* fix tests.

* fix for other frameworks.

* add examples in docstring.

cadcc1c2

[Test] Fix test of distributed graph (#1748) · 17701174

Da Zheng authored Jul 03, 2020

* Revert "Serialize server and client start for dist_graph_store test (#1736)"

This reverts commit da16ebf0.

* sleep

17701174

Use timeval to set up SO_RCVTIMEO (#1734) · f80fc9bd

mszarma authored Jul 03, 2020



Refactor code to use timeval struct
for setting up the SO_RCVTIMEO variable
timeout value for sockets in case of Linux.
Changed SetTimeout API timeout input to seconds.
Co-authored-by: Chao Ma <mctt90@gmail.com>

f80fc9bd

[Model] GraphSAGE inductive example (#1741) · 4ddd477f
Quan (Andy) Gan authored Jul 03, 2020
```
* graphsage inductive example

* fix
```
4ddd477f

02 Jul, 2020 1 commit

[Sampling] NodeDataLoader for node classification (#1635) · 168a88e5

Quan (Andy) Gan authored Jul 02, 2020



* neighbor sampler data loader first commit

* more commit

* nodedataloader

* fix

* update RGCN example

* update OGB

* fixes

* fix minibatch RGCN crashing with self loop

* reverting gatconv test code

* fix

* change to new solution that doesn't require tf dataloader

* fix

* lint

* fix

* fixes

* change doc

* fix docstring

* docstring fixes

* return seeds and input nodes from data loader

* fixes

* fix test

* fix windows build problem

* add pytorch wrapper

* fixes

* add pytorch wrapper

* add unit test

* add -1 support to sample_neighbors & fix docstrings

* docstring fix

* lint

* add minibatch rgcn evaluations
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Tong He <hetong007@gmail.com>

168a88e5