GitLab

[Bug?] Fix non-determinism when setting the same seed across different runs with single thread (#1205)

* fix multithread random seed value

* more fix

* typo

* what did i wrote

* another fix

* another try

* fix

* rewriting with kernel functions

* revert mxnet softmax changes

* lint fix
Co-authored-by: Zihao Ye <zihaoye.cs@gmail.com>

* remote copy from parent

* upd

* make test_sampler easier to pass

* [BUG] Fix empty heterograph creation with list & tuple

* more fix

* upd

* upd

* upd

* upd

* lint

* upd

* upd

* upd

* upd

* upd
Co-authored-by: VoVAllen <VoVAllen@users.noreply.github.com>

* [Feature] Pickle support for heterograph

* fix lint
Co-authored-by: VoVAllen <VoVAllen@users.noreply.github.com>

* upd

* upd

* upd

* upd

* lint

* upd

* upd

* upd

* upd
Co-authored-by: VoVAllen <VoVAllen@users.noreply.github.com>

Fixes #1182 .

This is embarrassing.

* multi-gpu

* Pytorch can run but test has acc problem

* pytorch train/eval can run in multi-gpu

* Fix eval

* Fix

* Fix mxnet

* trigger

* triger

* Fix mxnet score_func

* Fix

* check

* FIx default arg

* Fix train_mxnet mix_cpu_gpu

* Make relation mix_cpu_gpu

* delete some dead code

* some opt for update

* Fix cpu grad update

* upd

* upd

* change download link to cdn

* Update env_var.rst

* API change of kvstore

* add demo for kvstore

* update

* remove duplicated log

* change queue size

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* change name

* update

* fix lint

* update

* update

* update

* update

* change message queue size to a python argument

* change default queue size to 2GB

* OMP_NUM_THREADS=1

* add multiple NICs support for kvstore

* test

* fix lint

* update

* update

* update

* update

* update

* update

* update

* fix lint

* fix lint

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* update

* fix lint

* delete msg

* clear kv msg

* update

* update

* update

* update

* update

* update

* is not None

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* API change of kvstore

* add demo for kvstore

* update

* remove duplicated log

* change queue size

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* change name

* update

* fix lint

* update

* update

* update

* update

* change message queue size to a python argument

* change default queue size to 2GB

* OMP_NUM_THREADS=1

* add multiple NICs support for kvstore

* test

* fix lint

* update

* update

* update

* update

* update

* update

* update

* fix lint

* fix lint

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* update

* fix lint

* attach positive.

* add neg_deg_sample.

* add comment.

* add neg_deg_sample for eval.

* change the edge sampler.

* rename edge sampler in KG.

* allow specifying chunk size and negative sample size separately.

* fix bugs in KG.

* add check in sampler.

* add more checks.

* fix

* add comment.

* add comments.

* remove parallel sampling for multiprocessing.

* avoid memory copy in eval.

* remove print.

* add no_eval_filter

* fix eval.

* upd

* upd

* lint

* upd

* upd

* lint

* upd

* refactor

* lint

* upd

* upd

* upd

* lint

* fix

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* complete test

* upd

* upd

* fix

* vir

* upd

* fix

* fuck

* fix numerical

* accel edge sampling.

* measure sampling time.

* attach positive.

* add neg_deg_sample.

* fix a minor bug.

* remove unnecessary code.

* Revert "add neg_deg_sample."

This reverts commit 45f3c08c87e33589563ca7e6a3ec91cb1239910e.

* Revert "attach positive."

This reverts commit 503d7821555b69b7ccfed55ce8b87ee24fff852d.
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* hot fix

* Fix docs

* Fix ArrayHeap float overflow bug

* Fix

* Clean some dead code

* Fix

* FIx

* Add some comments

* run test

* API change of kvstore

* add demo for kvstore

* update

* remove duplicated log

* change queue size

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* change name

* update

* fix lint

* update

* update

* update

* update

* change message queue size to a python argument

* change default queue size to 2GB

* OMP_NUM_THREADS=1

* add multiple NICs support for kvstore

* test

* fix lint

* update

* update

* update

* update

* update

* update

* update

* fix lint

* fix lint

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* API change of kvstore

* add demo for kvstore

* update

* remove duplicated log

* change queue size

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* change name

* update

* fix lint

* update

* update

* update

* update

* change message queue size to a python argument

* change default queue size to 2GB

* OMP_NUM_THREADS=1

* add multiple NICs support for kvstore

* test

* fix lint

* update

* update

* update

* update

* update

* update

* update

* fix lint

* fix lint

* update

* update

* update

* update

* reduce memory consumption.

* fix a bug.

* fix a bug.

* fix.

current samplers only support working on CPU

* API change of kvstore

* add demo for kvstore

* update

* remove duplicated log

* change queue size

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* change name

* update

* fix lint

* update

* update

* update

* update

* change message queue size to a python argument

* change default queue size to 2GB

* OMP_NUM_THREADS=1

* update work with different backend section

* fix some warnings

* Update backend.rst

* Update index.rst
Co-authored-by: VoVAllen <VoVAllen@users.noreply.github.com>

* API change of kvstore

* add demo for kvstore

* update

* remove duplicated log

* change queue size

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix lint

* change name

* update

* fix lint

* update

* update

* update

* update

* change message queue size to a python argument

* Add weight based edge sampler

* Can run, edge weight work.
TODO: test node weight

* Fix node weight sample

* Fix y

* Update doc

* Fix syntex

* Fix

* Fix GPU test for sampler

* Fix test

* Fix

* Refactor EdgeSampler to act as class object not function that it
can record its own private states.

* clean

* Fix

* Fix

* Fix run bug on kg app

* update

* update test

* test

* Simply python API and fix some C code

* Fix

* Fix

* Fix syntex

* Fix

* Update API description

* add replacement for edge sampler

* Now edge sampler support replacement and no-replacement

* Fix

* Fix

* change kg/app to use edge sampler with replacement config

* Update replacement algo

* Fix syntax

* Update

* Update
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* get subgraph with halo.

* add partition function.

* add comment.

* parallel partition.

* fix a compilation error.

* fix lint error.

* address comments.

* add comments.

* fix for TF.

* tf

* add builtin support

* fiix

* pytest

* fix

* fix

* fix some bugs

* fix selecting

* fix todo

* fix test

* fix test fail in tf

* fix

* fix

* fix gather row

* fix gather row

* log backend

* fix gather row

* fix gather row

* fix for pytorch

* fix

* fix

* fix

* fix

* fix

* fix tests

* fix

* fix

* fix

* fix

* fix

* fix

* fix convert

* fix

* fix

* fix

* fix inplace

* add alignment setting

* add debug option

* Revert "add alignment setting"

This reverts commit ec63fb3506ea84fff7d447a1fbdfd1d5d1fb6110.

* tf ci

* fix lint

* fix lint

* add tfdlpack

* fix type

* add env

* fix backend

* fix

* fix tests

* remove one_hot

* remove comment

* remove comment

* fix

* use pip to install all

* fix test

* fix base

* fix

* fix

* add skip

* upgrade cmake

* change version

* change ci

* fix

* fix

* fix

* fix

* fix seg fault

* fix

* fix python version

* fix

* try fix

* fix

* fix

* tf takes longer time in ci

* change py version

* fix

* fix

* fix oom

* change kg env

* change kg env

* 啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊

* 我再也不搞各种乱七八糟环境了……

* use pytest

* Chang image

* try node

* try

* fix

* try new ci

* try new ci

* try new ci

* try new ci

* ci

* try

* try

* fix

* hot fix

* fix

* fix cpp test

* add comments

* tf

* add builtin support

* fiix

* pytest

* fix

* fix

* fix some bugs

* fix selecting

* fix todo

* fix test

* fix test fail in tf

* fix

* fix

* fix gather row

* fix gather row

* log backend

* fix gather row

* fix gather row

* fix for pytorch

* fix

* fix

* fix

* fix

* fix

* fix tests

* fix

* fix

* fix

* fix

* fix

* fix

* fix convert

* fix

* fix

* fix

* fix inplace

* add alignment setting

* add debug option

* Revert "add alignment setting"

This reverts commit ec63fb3506ea84fff7d447a1fbdfd1d5d1fb6110.

* tf ci

* fix lint

* fix lint

* add tfdlpack

* fix type

* add env

* fix backend

* fix

* fix tests

* remove one_hot

* remove comment

* remove comment

* fix

* use pip to install all

* fix test

* fix base

* fix

* fix

* add skip

* upgrade cmake

* change version

* change ci

* fix

* fix

* fix

* fix

* fix seg fault

* fix

* fix python version

* fix

* try fix

* fix

* fix

* tf takes longer time in ci

* change py version

* fix

* fix

* fix oom

* change kg env

* change kg env

* 啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊

* 我再也不搞各种乱七八糟环境了……

* use pytest

* Chang image

* try node

* try

* fix

* try new ci

* try new ci

* try new ci

* try new ci

* ci

* try

* try

* fix

* tf

* add builtin support

* fiix

* pytest

* fix

* fix

* fix some bugs

* fix selecting

* fix todo

* fix test

* fix test fail in tf

* fix

* fix

* fix gather row

* fix gather row

* log backend

* fix gather row

* fix gather row

* fix for pytorch

* fix

* fix

* fix

* fix

* fix

* fix tests

* fix

* fix

* fix

* fix

* fix

* fix

* fix convert

* fix

* fix

* fix

* fix inplace

* add alignment setting

* add debug option

* Revert "add alignment setting"

This reverts commit ec63fb3506ea84fff7d447a1fbdfd1d5d1fb6110.

* tf ci

* fix lint

* fix lint

* add tfdlpack

* fix type

* add env

* fix backend

* fix

* fix tests

* remove one_hot

* remove comment

* remove comment

* fix

* use pip to install all

* fix test

* fix base

* fix

* fix

* add skip

* upgrade cmake

* change version

* change ci

* fix

* fix

* fix

* fix

* fix seg fault

* fix

* fix python version

* fix

* try fix

* fix

* fix

* tf takes longer time in ci

* change py version

* fix

* fix

* fix oom

* change kg env

* change kg env

* 啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊

* 我再也不搞各种乱七八糟环境了……

* use pytest

* Chang image

* Add several splitting methods

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Finally

* CI