GitLab

* Fix

* CI
Co-authored-by: Ubuntu <ubuntu@ip-172-31-31-136.us-west-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* squeeze node labels in FraudDataset

* fix RLModule

* update results in README.md

* fix KeyError in full graph training
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* [BugFix] fix in/out degree computation

* add unit tests

* add word_ids and simplify

* simplify

* add word_ids to be removed later

* remove word_ids

* seems to work

* tweak

* transpose word_z

* add word_ids example

* check api compatibility

* improve compatibility

* update doc

* tweak verbose

* restore word_z layout; tweak

* tweak

* tweak doc

* word_cT

* use log_weight and some other tweaks

* rewrite README

* update equations

* rewrite for clarity and pass tests

* tweak

* bugfix import

* fix unit test

* fix mult to be the same as old versions

* tweak

* could be a bugfix

* 0/0=nan

* add doc_subgraph utility function

* minor cache optimization

* minor cache tweak

* add environmental variable to trade cache speed for memory

* update README

* tweak

* add sparse update pass unit test

* simplify sparse update

* improve low-memory efficiency

* tweak

* add sample expectation scores to allow resampling

* simplify

* update comment

* avoid edge cases

* bugfix pred scores

* simplify

* add save function
Co-authored-by: Yifei Ma <yifeim@amazon.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

Remove self-loops and duplicate edges before ParMETIS and restore when converting to DGLGraph (#3472)

* save self-loops and duplicated edges separately.

* [BugFix] sort graph by dgl.ETYPE

* fix bugs in verify script

* fix verify logic

* refine README
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* Based on issue #3436. Improving _SegmentCopyKernel s GPU utilization by switching to nonzero based thread assignment

* fixing lint issues

* Update cub for cuda 11.5 compatibility (#3468)

* fixing type mismatch

* tx guaranteed to be smaller than nnz. Hence removing last check

* minor: updating comment

* adding three unit tests for csr slice method to cover some corner cases
Co-authored-by: Abdurrahman Yasar <ayasar@nvidia.com>
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>

* link prediction tutorial

* add performance tip

* Update L2_large_link_prediction.py

* enable unit tests for dataloader on the GPU

* fix compatibility

* copyright

* fix linting
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>

* relabel gpu

* unittest for ralebl_ on the GPU

* finish Relabel_ for the GPU

* copyright

* re-enable the unittest for edge_subgrah on the GPU

* fix unittest for tensorflow

* use a fixed number of threads
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update

* Fix

* Fix

* Update

* Update

* Update

* Fix CI

* Fix

* Fix

* Fix

* Update

* Update

* Update

* Fix

* Fix

* Fix for TF

* [Model][Core] GATv2

* lint

* gatv2conv.py

* lint

* lint

* style and docs

* lint

* gatv2conv fix
Co-authored-by: Shaked Brody shakedbr@campus.technion.ac.il <shakedbr@tangerine.cslcs.technion.ac.il>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* added nn pytorch egatconv

* aligned with test build

* aligned with test build

* fixed wihite spaces

* fixed wihite spaces

* fixed wihite spaces

* added missing egatconv in imports

* added indentation in forward

* GATConv based implementation

* removed **kw_args

* added dgl relative imports

* PR corrections

* added DGL Error to EGATConv imports

* Update test_nn.py
Co-authored-by: Argusmocny <k.kaminski@cent.uw.edu.pl>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* gpu compact graph template

* cuda compact graph draft

* fix typo

* compact graphs

* pass unit test but fail in training

* example using EdgeDataLoader on the GPU

* refactor cuda_compact_graph and cuda_to_block

* update training scripts

* fix linting

* fix linting

* fix exclude_edges for the GPU

* add --data-cpu & fix copyright

* remove duplicate paper

* Update README.md

* parallelize CSRRowSlice()

* use parallel_for for the second loop
Co-authored-by: nv-dlasalle <63612878+nv-dlasalle@users.noreply.github.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* try to avoid memory leak

* try to avoid memory leak

* avoid memory leak with no hope

* Revert "avoid memory leak with no hope"

This reverts commit c77befe9479f46758e744642f66dd209b50eef7d.

* no message

* Update sparse.py

* Update tensor.py
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* Add pytorch-direct version

* remove

* add documentation for UnifiedTensor

* Revert "add documentation for UnifiedTensor"

This reverts commit 63ba42644d4aba197c1cb4ea4b85fa1bc43b8849.

* add boundary check for UVM IndexSelect

* relocate boundary check index kernels to cuda

* fix function name

* fix indexkernel in nccl api

* fix argument ordering

* simplify code

* Add a comment for the uvm version
Co-authored-by: shhssdm <shhssdm@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Use ==/!= to compare constant literals (str, bytes, int, float, tuple)

Avoid Syntax Warnings on Python >= 3.8

$ `python3`
```
>>> "" == ""
True
>>> "" is ""
<stdin>:1: SyntaxWarning: "is" with a literal. Did you mean "=="?
True
```

* Use ==/!= to compare constant literals (str, bytes, int, float, tuple)

[PyTorch][Bugfix] Use uint8 instead of bool in pytorch to be compatible with nightly version (#3406)

* Use uint8 instead of bool in pytorch

* Handle type aliases

* Fix syntax error
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* [Bugfix] fix a compile error for Debug-BuildType on Windows Platform

When using CMakeLists.txt to build the "Debug" BuildType on the Windows Platform, it has three compile errors (C4716) in the file "dgl\src\runtime\shared_mem.cc":

'dgl::runtime::SharedMemory::CreateNew': must return a value
'dgl::runtime::SharedMemory::Open': must return a value
'dgl::runtime::SharedMemory::Exist': must return a value

* [Bugfix] cmake error "cannot find load file" when DGL as a sub_directory on Linux

When using DGL as a subdirectory in a CMake Project, the "CMAKE_SOURCE_DIR" here will return the parent cmake scope dir, which is not a expected dir.
Maybe it is better to use "CMAKE_CURRENT_SOURCE_DIR" to set "GKLIB_PATH".

* [Bugfix] cmd cmake error when DGL as a subdirectory

When DGL as a subdirectory of another project, the WORKING_DIRECTORY of "add_custom_command" will be incorrect at the line 255 of "CMakeLists.txt", such that making a cmake "setlocal" error.

* Update README.md

* Update README.md

Co-authored-by: Israt Nisa <nisisrat@amazon.com>