Commits · 5008af2210cc08a72719d5eb81c8e080dc3de085 · OpenDAS / dgl

29 Mar, 2023 1 commit
- [Misc] Rename number_of_edges and number_of_nodes to num_edges and num_nodes in examples. (#5492) · 5008af22
  Hongzhi (Steve), Chen authored Mar 29, 2023
```
* pytorch_example

* fix

---------
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>
```
  5008af22
22 Mar, 2023 1 commit
- Update main.py (#5460) · a0730530
  Mufei Li authored Mar 22, 2023
  
  a0730530
19 Feb, 2023 1 commit

Hongzhi (Steve), Chen authored Feb 19, 2023


Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-63.ap-northeast-1.compute.internal>

704bcaf6

01 Dec, 2022 1 commit
- [API Deprecation] Remove candidates in DGLGraph (#4946) · 61139302
  peizhou001 authored Dec 01, 2022
  
  61139302
15 Nov, 2022 1 commit
- Deprecate (#4864) · 3132da28
  peizhou001 authored Nov 15, 2022
```
rename DGLHeteroGraph to DGLGraph
```
  3132da28
09 Nov, 2022 1 commit
- Fix ogb/ogbn-mag/heter-RGCN example (#4839) · 6566c31f
  Chang Liu authored Nov 08, 2022
```
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
```
  6566c31f
03 Nov, 2022 1 commit

[Example] Update SEAL+NGNN for ogbl-citation2 (#4776) · 7c788f53

Ereboas authored Nov 03, 2022



* Use black for formatting

* limit line width to 80 characters.

* Use a backslash instead of directly concatenating

* file structure adjustment.

* file structure adjustment(2)

* codes for citation2

* format slight adjustment

* adjust format in models.py

* now it runs normally for all datasets.

* add comments; adjust code order.

* adjust indenting.
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

7c788f53

27 Oct, 2022 1 commit

[Example] SEAL+NGNN for ogbl-citation2 (#4772) · f9805ef1

Ereboas authored Oct 28, 2022



* Use black for formatting

* limit line width to 80 characters.

* Use a backslash instead of directly concatenating

* file structure adjustment.

* file structure adjustment(2)

* codes for citation2

* format slight adjustment

* adjust format in models.py

* now it runs normally for all datasets.
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

f9805ef1

22 Oct, 2022 1 commit

[EXAMPLE]Add device support in hetero_rgcn (#4677) · e682fa74

Chendi.Xue authored Oct 21, 2022



* Add device support in hetero_rgcn
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>

* use num_workers instead of hard code and enable cpu_affinity for pytorch > 1.12
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>

* Remove hard code num_workers and use dgl version to check if cpu_affinity is supported
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>

* Remove specified dl_cores and computer_cores

Add error print if num_workers are miss set
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>

* expected num_workers should be less than num_physical_cores
Signed-off-by: Chendi Xue <chendi.xue@intel.com>

* Update examples/pytorch/ogb/ogbn-mag/hetero_rgcn.py
Co-authored-by: Chang Liu <chang.liu@utexas.edu>

* Remove dgl version and num_workers print
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>

* add comment to explain is_support_affinity

* Fix typo
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>
Signed-off-by: Xue, Chendi <chendi.xue@intel.com>
Signed-off-by: Chendi Xue <chendi.xue@intel.com>
Co-authored-by: Chang Liu <chang.liu@utexas.edu>

e682fa74

28 Sep, 2022 1 commit
- [Misc] Black auto fix. (#4652) · 0b9df9d7
  Hongzhi (Steve), Chen authored Sep 28, 2022
```
Co-authored-by: Steve <ubuntu@ip-172-31-34-29.ap-northeast-1.compute.internal>
```
  0b9df9d7
27 Sep, 2022 1 commit
- [Example][Bugfix] Fix mlp example (#4631) · 7f50a6da
  Chang Liu authored Sep 27, 2022
```
* Fix mlp example

* Remove unused file
```
  7f50a6da
22 Sep, 2022 1 commit

[Example] SEAL+NGNN for ogbl (#4550) · 92bff4d2

Ereboas authored Sep 22, 2022



* Use black for formatting

* limit line width to 80 characters.

* Use a backslash instead of directly concatenating

* file structure adjustment.

* file structure adjustment(2)
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

92bff4d2

31 Aug, 2022 1 commit

[Example] SEAL for OGBL (#4291) · b9290e8b

rudongyu authored Aug 31, 2022



* [Example] SEAL for OGBL

* update index

* update

* fix readme typo

* add seal sampler

* modify set ops

* prefetch

* efficiency test

* update

* optimize

* fix ScatterAdd dtype issue

* update sampler style

* update
Co-authored-by: Quan Gan <coin2028@hotmail.com>

b9290e8b

26 Aug, 2022 1 commit

[Example] directional_GSN for ogbg-molpcba (#4405) · 97b2ab53

Zhiteng Li authored Aug 26, 2022



* version-1

* version-2

* version-3

* update examples/README

* Update .gitignore

* update performance in README, delete scripts

* 1st approving review

* 2nd approving review
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

97b2ab53

13 Aug, 2022 1 commit

[Example] NGNN for ogbl (#4328) · 49c81795

Ereboas authored Aug 13, 2022



* NGNN for ogbl

* modify doc organization.

* merge similar parts

* 1st approving review.

* minor changes

* Remove the "Usage" section.
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

49c81795

10 Aug, 2022 1 commit

[Example]rgcn-ogbn-mag (#4331) · a88e7f7e

YJ-Zhao authored Aug 10, 2022



* rgcn-ogbn-mag

* Add link in README.md

* correct code-format,add the reset_parameters function to the HeteroEmbedding module

* add the annotation in hetero.py

* add a unit test

* modify format

* Update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-50-143.us-west-2.compute.internal>

a88e7f7e

09 Jun, 2022 1 commit

[Bugfix] Fix example case: examples/pytorch/ogb/ogbn-proteins and... · 549df65a

Chang Liu authored Jun 09, 2022

[Bugfix] Fix example case: examples/pytorch/ogb/ogbn-proteins and examples/pytorch/ogb/ogbn-products (#4080)

* [Bugfix] Fix ogbn-gat-proteins/products examples

* Remove unused BatchSampler definition

* Remove comments to ease reading/reviewing

* Remove dataloader wrapper

549df65a

02 Jun, 2022 1 commit
- [Bugfix] Fix cluster-gat examples (#4068) · 9e46423e
  Chang Liu authored Jun 02, 2022
```
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
```
  9e46423e
11 May, 2022 1 commit
- [Example] Rename NodeDataLoader to DataLoader in GraphSAGE example (#3972) · 74f01405
  Quan (Andy) Gan authored May 11, 2022
```
* rename

* Update node_classification.py

* more fixes...
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  74f01405
12 Apr, 2022 1 commit

[Feature] Enable UVA sampling with CPU indices (#3892) · e06e63d5

Quan (Andy) Gan authored Apr 12, 2022

* enable UVA sampling with CPU indices

* add docs

* add more docs

* lint

* fix

* fix

* better error message

* use mp.Barrier instead of queues

* revert

* revert

* oops

* revert dgl.multiprocessing.spawn

* Update pytorch.py

e06e63d5

24 Feb, 2022 1 commit
- [Transform] [Doc] Rename transform to transforms and update doc (#3765) · 6d9433b0
  Mufei Li authored Feb 24, 2022
```
* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix
```
  6d9433b0
20 Dec, 2021 1 commit

[Example] An example that re-creates the PyG OGB performance on ogbnmag (#3563) · 42897c36

Zak Jost authored Dec 20, 2021



* Adding initial files of example

* Removing old timing code

* Improving doc strings and fixing some minor bugs

* Merging from upstream and addressing PR comments
Co-authored-by: zakjost <jostza@amazon.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

42897c36

26 Oct, 2021 1 commit
- Update README.md (#3442) · 579cd3eb
  Hongyu Cai authored Oct 26, 2021
  
  579cd3eb
15 Jul, 2021 1 commit

[Bug fix] Various fix from bug bash (#3133) · 3f6f6941

Mufei Li authored Jul 15, 2021



* Update

* Update

* Update dependencies

* Update

* Update

* Fix ogbn-products gat

* Update

* Update

* Reformat

* Fix typo in node2vec_random_walk

* Specify file encoding

* Working for 6.7

* Update

* Fix subgraph

* Fix doc for sample_neighbors_biased

* Fix hyperlink

* Add example for udf cross reducer

* Fix

* Add example for slice_batch

* Replace dgl.bipartite

* Fix GATConv

* Fix math rendering

* Fix doc
Co-authored-by: Ubuntu <ubuntu@ip-172-31-28-17.us-west-2.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-22-156.us-west-2.compute.internal>

3f6f6941

12 Jul, 2021 1 commit
- fix docs (#3126) · 36418292
  Jinjing Zhou authored Jul 12, 2021
```
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
```
  36418292
16 Jun, 2021 1 commit

[Example] update ogbn-arxiv and ogbn-proteins results (#3018) · 305d5c16

espylapiza authored Jun 16, 2021



* [Example] GCN on ogbn-arxiv dataset

* Add README.md

* Update GCN implementation on ogbn-arxiv

* Update GCN on ogbn-arxiv

* Fix typo

* Use evaluator to get results

* Fix duplicated

* Fix duplicated

* Update GCN on ogbn-arxiv

* Add GAT for ogbn-arxiv

* Update README.md

* Update GAT on ogbn-arxiv

* Update README.md

* Update README

* Update README.md

* Update README.md

* Add GAT implementation for ogbn-proteins

* Add GAT implementation for ogbn-proteins

* Add GAT implementation for ogbn-proteins

* Add GAT implementation for ogbn-proteins

* Add GAT implementation for ogbn-proteins

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Update examples for ogbn-arxiv

* Add examples for ogbn-products.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-proteins.

* Update examples for ogbn-products.

* Update examples for ogbn-products.

* Update examples for ogbn-arxiv.

* Update examples for ogbn-arxiv.

* Update examples for ogbn-arxiv.

* Update examples for ogbn-proteins.

* Update examples for ogbn-products.

* Update examples for ogbn-proteins.

* Update examples for ogbn-arxiv.

* Update examples for ogbn-proteins.

* Update README.md

* [Example] ogbn-arxiv & ogbn-proteins

* [Example] ogbn-arxiv & ogbn-proteins

* [Example] ogbn-arxiv & ogbn-proteins

* [Example] ogbn-arxiv & ogbn-proteins
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

305d5c16

14 May, 2021 1 commit
- [Feature] Replacing thread_wrapped_func with minimal mp.Process wrapper (#2905) · caa6d607
  Quan (Andy) Gan authored May 14, 2021
```
* standardizing thread_wrapped_func

* lints

* Update __init__.py
```
  caa6d607
05 Feb, 2021 1 commit
- [Fix] Various Fix after Bug Bash (#2620) · 3ca52b1e
  Mufei Li authored Feb 05, 2021
```
* update

* Misc fix

* Update
```
  3ca52b1e
26 Jan, 2021 1 commit

[Doc][Org] move edge_softmax to functional (#2442) · 6c23fba8

Quan (Andy) Gan authored Jan 26, 2021



* move edge_softmax to functional

* change examples

* fixes

* revert

* fix

* fix

* remove

* fix

* test

* add init
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

6c23fba8

13 Jan, 2021 1 commit
- [Doc] Fix typo of datasets (#2517) · 1502c56d
  Hongyu Cai authored Jan 13, 2021
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  1502c56d
28 Dec, 2020 1 commit

[Example] Move Data to GPU before Minibatch Training (#2453) · 927d2b31

Mufei Li authored Dec 28, 2020

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

927d2b31

20 Dec, 2020 1 commit

[Fix] Avoid Overloading Nonzero for PyTorch Backend (#2434) · 492ad9be

Mufei Li authored Dec 20, 2020

* Update gatedgraphconv.py

* Update entity_classify.py

* Update data-process.rst

* Update reading_data.py

* Update data-process.rst

* Update utils.py

* Update knowledge_graph.py

* Update entity_classify.py

* Update rdf.py

* Update entity_classify_mb.py

* Update test_classify.py

* Update tensor.py

* Update sparse.py

* Update entity_classify_mp.py

* Update 6_line_graph.py

492ad9be

03 Nov, 2020 1 commit

[Model] SIGN for OGB dataset (#2316) · b8cc26e3

Lingfan Yu authored Nov 02, 2020



* sign for ogbn products, arxiv, mag

* texts

* fix

* update ogb folder readme

* use dgl nightly build
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

b8cc26e3

29 Oct, 2020 2 commits

[Fix] typo (#2265) · 269983db

chwan-rice authored Oct 29, 2020



* upd

* upd

* upd

* upd

* upd

* fix OpenMP compatibility issues

* typo

* partition

* misc

* fix typo

* num_parts=1

* import torch

* long

* print info

* print info

* print info

* upd

* remove debug code

* revert partition.py

* fix cut count

* fix cut count

* Revert "fix cut count"

This reverts commit 10926b4fd48f45c8f1ddb58be7db6c22e653effd.

* Revert "fix cut count"

This reverts commit 76465283bef093a2b4209ad70dd15d2437b2ec8a.

* type of deprecate

* typo in deprecate info

* fix typo

* use cv for partitioning

* CE

* no message

* revert

* typo

* no message

* no message

* no message

* practice

* dmlc-core

* DGLGraph
Co-authored-by: yzh119 <expye@outlook.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

269983db

[Example] fix print info (#2305) · d06c5403
maqy1995 authored Oct 29, 2020

d06c5403

20 Sep, 2020 1 commit

[Example] Implement LINE with dgl and pytorch (#2195) · eef4c059

Hao Xiong authored Sep 21, 2020



* line

* two lines

* update readme

* readme

* update readme

* update

* Implement LINE

* readme

* readme

* typos

* update readme
Co-authored-by: Zihao Ye <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

eef4c059

18 Sep, 2020 1 commit

[Example] GAT on ogbn-arxiv (#2210) · 47bb0593

espylapiza authored Sep 18, 2020



* [Example] GCN on ogbn-arxiv dataset

* Add README.md

* Update GCN implementation on ogbn-arxiv

* Update GCN on ogbn-arxiv

* Fix typo

* Use evaluator to get results

* Fix duplicated

* Fix duplicated

* Update GCN on ogbn-arxiv

* Add GAT for ogbn-arxiv

* Update README.md

* Update GAT on ogbn-arxiv

* Update README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

47bb0593

15 Sep, 2020 1 commit

[Fix] fix some typos in example/ogb/deepwalk/ (#2190) · 9488bace

Hao Xiong authored Sep 15, 2020



* line

* two lines

* update readme

* readme

* update readme

* update
Co-authored-by: Zihao Ye <expye@outlook.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

9488bace

12 Sep, 2020 1 commit
- Fix `create_format_` to `create_formats` (#2184) · 0afacfb8
  Jinjing Zhou authored Sep 12, 2020
```
* Update dgl.DGLGraph.rst

* Update gcn.py
```
  0afacfb8
05 Sep, 2020 1 commit

[Example] Fix duplicated (#2154) · 3659fb05

espylapiza authored Sep 06, 2020



* [Example] GCN on ogbn-arxiv dataset

* Add README.md

* Update GCN implementation on ogbn-arxiv

* Update GCN on ogbn-arxiv

* Fix typo

* Use evaluator to get results

* Fix duplicated

* Fix duplicated
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

3659fb05