Commits · 4c5136c8f8ded9087fd3aa75721b45db18e9b069 · OpenDAS / dgl

19 Aug, 2020 4 commits
- deprecated some mxnet example (#2054) · 4c5136c8
  xiang song(charlie.song) authored Aug 19, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
  4c5136c8
- Update (#2057) · 6e8f7605
  Mufei Li authored Aug 19, 2020
  
  6e8f7605
- Fix tree lstm (#2052) · 4edde000
  xiang song(charlie.song) authored Aug 19, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-129.ec2.internal>
```
  4edde000
- Fix (#2051) · f3f35098
  xiang song(charlie.song) authored Aug 19, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-129.ec2.internal>
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  f3f35098
18 Aug, 2020 8 commits

[Example] Rgcn distributed training (#1999) · 0052f121

xiang song(charlie.song) authored Aug 19, 2020



* add entity_classify_dist

* upd

* update

* Fix

* Fix

* upd

* upd

* upd

* upd

* global eval

* Fix

* Fix

* Fix

* Fix

* FIx

* upd

* upd

* update

* support pytorch sparse embedding

* Fix

* Fix

* update Readme

* update with new API

* Fix

* update Readme

* add fanout for validation neighbor sampling
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-24-210.ec2.internal>
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

0052f121

Fix mxnet gin (#2048) · 3d654843
xiang song(charlie.song) authored Aug 19, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
3d654843
[Feature] Change the Default Value of transpose in DGLGraph.adj (#2046) · 9088c635
Mufei Li authored Aug 18, 2020
```
* Update adj

* Fix
```
9088c635
[Feature] Make sample_neighbors copy features on demand (#2042) · edfbee2c
Quan (Andy) Gan authored Aug 18, 2020
```
* fix

* fix

* lint

* fix

* test

* fix

* fix
```
edfbee2c

[Example] rm gcn spmv (#2044) · 09ec6020

xiang song(charlie.song) authored Aug 18, 2020



* rm gcn spmv

* remove useless test

* remove useless test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

09ec6020

upd (#2043) · 6d346281
Zihao Ye authored Aug 18, 2020

6d346281
remove kvstore example which is not maintianed and is out of date (#2041) · 1a1f38e3
xiang song(charlie.song) authored Aug 18, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
1a1f38e3
[Model] use dask to parallelize preprocessing (#2040) · 6367318f
Quan (Andy) Gan authored Aug 18, 2020

6367318f

17 Aug, 2020 2 commits

[Doc/Feature] Refactor, doc update and behavior fix for graphs (#1983) · be444e52

Mufei Li authored Aug 18, 2020



* Update graph

* Fix for dgl.graph

* from_scipy

* Replace canonical_etypes with relations

* from_networkx

* Update for hetero_from_relations

* Roll back the change of canonical_etypes to relations

* heterograph

* bipartite

* Update doc

* Fix lint

* Fix lint

* Fix test cases

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix test

* Fix

* Update

* Use DGLError

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* rewrite sanity checks

* delete unnecessary checks

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Update

* Fix

* Update

* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

be444e52

[Doc] API Doc update for mxnet and tf, remove some degree check (#2028) · b1e69105

Tianjun Xiao authored Aug 17, 2020

* mx tf relconv

* use method instead of private attr

* src and dst have different fc for gat

* update edgeconv

* change sage and sgconv

* no degree check on gin

* add remainding API doc

* fix pylint

* infer fc_src and fc_dst, only one tensor for block

* fix pytest

b1e69105

13 Aug, 2020 1 commit

[Distributed] Copy training scripts in copy_partitions.py (#2010) · eb9c067b

Chao Ma authored Aug 13, 2020

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

eb9c067b

12 Aug, 2020 5 commits

update (#2007) · 98c1117d
Chao Ma authored Aug 12, 2020

98c1117d
[Distributed] Fix all arguments to the format of xx_xxx (#2005) · f5d8fa84
Chao Ma authored Aug 12, 2020
```
* update

* update
```
f5d8fa84

[Example] Update results in Sudoku example with RRN (#1998) · 912da18c

Xiangkun Hu authored Aug 12, 2020

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* remove duplicate edges

* Update README.md

* change model save and load

* Update README.md

* Update README.md

912da18c

[Distributed] adjust various APIs. (#1993) · d1cf5c38

Da Zheng authored Aug 11, 2020

* rename get_data_size.

* remove g from DistTensor.

* remove g from DistEmbedding.

* clean up API of graph partition book.

* fix DistGraph

* fix lint.

* collect all part policies.

* fix.

* fix.

* support distributed sampler.

* remove partition.py

d1cf5c38

[Model] Fix GCMC broken code (#2001) · a6b44e72
Quan (Andy) Gan authored Aug 12, 2020
```
* [Model] Fix GCMC debugging code

* use the one with apply_edges
```
a6b44e72

11 Aug, 2020 4 commits

[Distributed] Move server start code to initialize. (#2002) · 4efa3320
Da Zheng authored Aug 11, 2020
```
* move server start code to initialize.

* fix.

* fix lint.

* fix examples.

* add more checks.
```
4efa3320

[Feature] Edge DataLoader for edge classification & link prediction (#1828) · f5eb80d2

Quan (Andy) Gan authored Aug 11, 2020

* clean commit

* oops forgot the most important files

* use einsum

* copy feature from frontier to block

* Revert "copy feature from frontier to block"

This reverts commit 5224ec963eb6a3ef1b6ab74d8ecbd44e4e42f285.

* temp fix

* unit test

* fix

* revert jtnn

* lint

* fix win64

* docstring fixes and doc indexing

* revert einsum in sparse bidecoder

* fix some examples

* lint

* fix due to some tediousness in remove_edges

* addresses comments

* fix

* more jtnn fixes

* fix

f5eb80d2

[Distributed] Remove server_count from ip_config.txt (#1985) · d340ea3a

Chao Ma authored Aug 11, 2020



* remove server_count from ip_config.txt

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* lint

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* Update dist_context.py

* fix lint.

* make it work for multiple spaces.

* update ip_config.txt.

* fix examples.

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* udpate

* update

* update

* update

* update

* update
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>

d340ea3a

Remove stale partition code and fix #1949 (#1984) · a089b91f
Jinjing Zhou authored Aug 11, 2020
```
* remove unused code

* fix litn

* fix
```
a089b91f

10 Aug, 2020 1 commit

[Distributed] Fix standalone (#1974) · ee30b2aa

Da Zheng authored Aug 10, 2020



* fix tests.

* fix.

* remove a test.

* make code work in the standalone mode.

* fix example.

* more fix.

* make DistDataloader work with num_workers=0

* fix DistDataloader tests.

* fix.

* fix lint.

* fix cleanup.

* fix test

* remove unnecessary code.

* remove tests.

* fix.

* fix.

* fix.

* fix example

* fix.

* fix.

* fix launch script.
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>

ee30b2aa

09 Aug, 2020 2 commits

[Feature] [Example] Graph matching routines with DGLGraphs (#1935) · 4097fa21

gurdaspuriya authored Aug 09, 2020



* Adding graph matching routines

* Adding graph matching routines
Co-authored-by: Ubuntu <ubuntu@ip-172-31-32-199.us-east-2.compute.internal>
Co-authored-by: Zihao Ye <expye@outlook.com>

4097fa21

[Example] Rgcn support ogbn-mag dataset. (#1812) · 4ef01dbb

xiang song(charlie.song) authored Aug 09, 2020



* rgcn support ogbn-mag dataset

* upd

* multi-gpu val and test

* Fix

* fix

* Add support for ogbn-mag

* Fix

* Fix

* Fix

* Fix

* Add layer_norm

* update

* Fix merge

* Clean some code

* update Readme

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-87-240.ec2.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

4ef01dbb

08 Aug, 2020 2 commits
- [Distributed] move feature copy to samplers in distributed GraphSage. (#1975) · 4b8eaf20
  Da Zheng authored Aug 08, 2020
```
* fix example.

* move feature copy to sampler.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
```
  4b8eaf20
- Update train_sampling_unsupervised.py (#1973) · d34cbf31
  Mufei Li authored Aug 08, 2020
  
  d34cbf31
07 Aug, 2020 3 commits

[bugfix] Fix a bunch of examples to be compatible with dgl 0.5 (#1957) · 264d96cd

Zihao Ye authored Aug 08, 2020



* upd

* upd

* upd

* upd

* upd

* upd

* fix pinsage also

* upd

* upd

* upd
Co-authored-by: Ubuntu <ubuntu@ip-172-31-29-3.us-east-2.compute.internal>
Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

264d96cd

[bugfix] Fix dataloader bug in GAT PPI data example (#1966) · dcf46412

Xiangkun Hu authored Aug 08, 2020



* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* fix dataloader bug
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Zihao Ye <expye@outlook.com>

dcf46412

Remove duplicate code of deepwalk (#1965) · 3611a66e
xiang song(charlie.song) authored Aug 07, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-87-240.ec2.internal>
```
3611a66e

06 Aug, 2020 3 commits
- [Bug] Fix VRGCN with new dataset (#1955) · ba110e50
  Quan (Andy) Gan authored Aug 06, 2020
  
  ba110e50
- fix (#1950) · cebf3364
  Jinjing Zhou authored Aug 06, 2020
  
  cebf3364
- [Example] Remove duplicated edges in RRN Sudoku example (#1946) · 3fa8d755
  Xiangkun Hu authored Aug 06, 2020
```
* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* remove duplicate edges

* Update README.md
```
  3fa8d755
05 Aug, 2020 3 commits

[hotfix] Remove dead code (#1942) · f9bde91f
xiang song(charlie.song) authored Aug 05, 2020
```
* Remove dead code

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
f9bde91f

[Distributed] DistDataloader (#1901) · 4f499c7f

Jinjing Zhou authored Aug 05, 2020



* 111

* 111

* fix

* 111

* fix

* 11

* fix

* lint

* Update __init__.py

* lint

* fix

* lint

* fix

* fix

* fix

* fix

* fix

* try fix

* try fix

* fix

* Revert "fix"

This reverts commit a0b954fd4e99b7df92b53db8334dcb583d6e1551.

* fixes.

* fix.

* fix test.

* fix exit.

* fix.

* fix

* fix

* lint

* lint

* lint

* fix

* Update .gitignore

* 111

* fix

* 111

* 111

* fff

* 1111

* 111

* 1325315

* ffff

* f???

* fff

* 1111

* 111

* fix

* 111

* asda

* 1111

* 11

* 123

* 啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊啊

* spawn

* 1231231

* up

* 111

* fix

* fix

* Revert "fix"

This reverts commit 7373f95312fdcaa36d2fc330bf242339e89c045d.

* fix

* fix

* 1111

* fix

* fix tests

* start kvclient as early as possible.

* lint

* fix test

* lint

* 1111

* fix

* fix

* 111

* fix

* fix

* 1

* fix

* fix

* lint

* fix

* lint

* lint

* remove quit

* fix

* lint

* fix

* fix several

* lint

* fix minor

* fix

* lint
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

4f499c7f

[Model] Rewrite GraphSAGE example (#1938) · 929c99ed
Quan (Andy) Gan authored Aug 05, 2020

929c99ed

04 Aug, 2020 2 commits
- Fix timing (#1930) · 1232961e
  xiang song(charlie.song) authored Aug 04, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
  1232961e
- [API] remove the expand_as_pair call (#1929) · fae26dd1
  Quan (Andy) Gan authored Aug 04, 2020
  
  fae26dd1