GitLab

Change the format of  README.md

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* Update README.md

Add description of RECT

* [Example] Add implementation of RECT

[Example] Add implementation of RECT

* Update classify.py

Modify the class names and the function names mentioned above

* Update main.py

Modify the function names mentioned above

* Update label_utils.py

Adjust the comments

* Update README.md

Add the github information
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>

* Start on uniform GPU sampling

* Save more work

* Get cu file compiling

* Update sampling

* More changes

* Get GPU sampling for uniform probabilities solved

* Fix batch tensor migration

* Fix

* update kernels

* expand blocking

* Undo testing change

* Cut down on sampling overhead

* Fix replacement

* Update unit tests

* Add option to gpu sample in graphsage

* Copy only csc to gpu

* Add ogbn support

* Fix linting

* Remove nvtx from sample

* Improve documentation and error checking

* Expand documentation

* Update assert checking

* delete extra space

* Use standard dataloader when dataset is a dictionary

* ogb -> ogbn

* Fix edge selection determinism

* Fix typos

* Remove nvtx

* Add comment for self.fanout_arrays and assert

* Fix linting

* Migrate to scalarbatcher

* Fix indentation

* Fix batcher

* Fix indexing

* Only use databatcher for GPU

* Convert to DGL NDArray to PyTorch Tensor

* Add optimization for PyTorch's F.tensor() for list of GPU tensors
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

* multi gpus training for mag240m

* remove unused function

* small changes

* more fix

* use multi gpus to eval and more fix
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* Add hgat example

* Add experiment

* Clean code

* clear the code

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Change the code title and folder name

* Ready to merge

* Prepare for rebase and change message passing function

* use git ignore to handle empty file

* change file permission to resolve empty file

* Change permission

* change file mode

* Finish Coding

* working code cpu

* pyg compare

* Accelerate with batching

* FastMode Enabled

* update readme

* Update README.md

* refractor code

* add graphsim code

* modified code

* few fix

* Modified graphsim

* Simple Model Added

* Clean up code

* Refractor the code for Merge

* Bugfix enable gradient when train

* update readme and format
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com>
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-4-63.ap-northeast-1.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-45-47.ap-northeast-1.compute.internal>

int has no attribute of item
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-73-81.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* [example] jknet

* update

* update

* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Typo in command example. 

process_nowplaying_rs.py is the right name under this folder.

* Update README.md

* Update README.md
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Add BGNN example

* Update bgnn example

* Remove uncessary files

* update model index

* style fix

* Add Readme for BGNN example

* Update documentation; remove preprocessing
Co-authored-by: s.ivanov <s.ivanov@mesos-slave080-am6.central.criteo.prod>
Co-authored-by: s.ivanov <s.ivanov@mesos-slave150-am6.central.criteo.prod>
Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: s.ivanov <s.ivanov@mesos-slave148-am6.central.criteo.prod>
Co-authored-by: s.ivanov <s.ivanov@mesos-slave078-am6.central.criteo.prod>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* compgcn

* readme

* readme

* update

* readme
Co-authored-by: zhjwy9343 <6593865@qq.com>

* RGAT baseline

* update links (data.dgl.ai hasn't refreshed yet)

* nvm still use dgl.ai domain

* descriptions

* actually it took less

* address comments

* stop worrying about cache

* update links

* oops

* [Example]Variational Graph Auto-Encoders

* change dgl dataset to single directional graph

* clean code

* refresh

* fix bug

* fix bug

* fix bug

* add gpu
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* remove num_workers.

* remove num_workers.

* remove num_workers.

* remove num-servers.

* update error message.

* update docstring.

* fix docs.

* fix tests.

* fix test.

* fix.

* print messages in test.

* fix.

* fix test.

* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>

* Update

* Add files via upload

* Add files via upload

* Add files via upload

Co-authored-by: messi-k <messi.k@kakaocorp.com>

* Add hgat example

* Add experiment

* Clean code

* clear the code

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Add index in README

* Change the code title and folder name

* Ready to merge

* Prepare for rebase and change message passing function

* use git ignore to handle empty file

* change file permission to resolve empty file

* Change permission

* change file mode

* Finish Coding

* working code cpu

* pyg compare

* Accelerate with batching

* FastMode Enabled

* update readme

* Update README.md

* refractor code

* Fix Bug

* add a simple temporal sampling method

* test results

* add train speed result

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* fix bug

* Fixed Grammar and Format Issue
Co-authored-by: Chen <chesirui@3c22fbe5458c.ant.amazon.com>
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-4-63.ap-northeast-1.compute.internal>
Co-authored-by: WangXuhongCN <wangxuhongcn@163.com>
Co-authored-by: WangXuhongCN <34096632+WangXuhongCN@users.noreply.github.com>

* [Example ]add mvgrl

* [Doc] add mvgrl to readme

* add more comments

* fix typos

* replace tab with space

* [doc] replace tab with space

* [Doc] fix a typo

* fix minor typos

* fix typos

* fix typos

* fix typos

* fix typos

* fix
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

Method `dataset.num_labels` has been deprecated and replaced by `dataset.num_classes`.  
Updating the method name to avoid runtime warning.
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* gnn-explainer

* gnn-explainer

* gnn-explainer

* gnn-explainer

* fix

* fix

* fix

* readme

* readme
Co-authored-by: zhjwy9343 <6593865@qq.com>

Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* Address bug where epochs exceed specified limit

* fix spacing

* [example] arma

* update

* update

* update

* update

* update

* [example] dimenet

* [docs] update dimenet

* [docs] update tf results

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* change DiffPoolBatchedGraphLayer

* fix bug and add benchmark

* upt

* upt

* upt

* upt
Co-authored-by: Tong He <hetong007@gmail.com>

* Add implementation of unsupervised model

* [Doc] Update Implementor's information

* [doc] add index of infograph

* [Feature] QM9_v2 Dataset Support

* fix a typo

* move qm9dataset from data to examples

* Update qm9_v2.py

* Infograph -> InfoGraph

* add implementation and results of semi-supervised model

* Update README.md

* Update README.md

* fix a typo

* Remove the duplicated links.

* fix some typos

* fix typos

* update model.py

* update collate fn

* remove unused functions

* Update model.py

* add device option

* Update evaluate_embedding.py

* Update evaluate_embedding.py

* Update unsupervised.py

* Fix typos

* fix bugs

* Update README.md
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* [Example]Variational Graph Auto-Encoders

* change dgl dataset to single directional graph

* clean code

* refresh
Co-authored-by: Tianjun Xiao <xiaotj1990327@gmail.com>

* support gpu training.

* remove unnecessary arguments.

* update README.

* update time measurement.

* add zero_grad.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

* Update README to use NFS, rather than copying files

* Update README.md

* Update README.md

* Update README.md

* Add ParMetis

* Update README.md

* fix directory.

* fix

* redo.

* fix.

* update.

* add more descriptions
Co-authored-by: Da Zheng <zhengda1936@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* [example] arma

* update

* update

* update

* update

* update
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* add seal example

* 1. add paper infomation in examples/README
2. adjust codes
3. option test

* use latest `to_simple` to replace coalesce graph function

* remove outdated codes

* remove useless comment

Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* add convert.

* fix.

* add write_mag.

* fix convert_partition.py

* write data.

* use pyarrow to read.

* update write_mag.py

* fix convert_partition.py.

* load node/edge features when necessary.

* reshuffle nodes.

* write mag correctly.

* fix a bug: inner nodes in a partition might be empty.

* fix bugs.

* add verify code.

* insert reverse edges.

* fix a bug.

* add get node/edge data.

* add instructions.

* remove unnecessary argument.

* update distributed preprocessing.

* fix readme.

* fix.

* fix.

* fix.

* fix readme.

* fix doc.

* fix.

* update readme

* update doc.

* update readme.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-132.us-west-1.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-2-202.us-west-1.compute.internal>

Co-authored-by: Ubuntu <ubuntu@ip-172-31-56-220.ec2.internal>

* add dependencies for GNN-Film and dagnn

* fix

* fix

* fix

* [Bug Fix][Example] hgp-sl: More info for running

* change list to table

* change dataset summary in gxn and sagpool

* remove redundent
Co-authored-by: Tong He <hetong007@gmail.com>