Commits · 3e2f94ed20ad50de0907050b2b29f1303b01339c · OpenDAS / dgl

29 Jul, 2020 1 commit

[Distributed] Refactor distributed training to new DGLGraph. (#1874) · 3e2f94ed

Da Zheng authored Jul 28, 2020

* fix tests in partition.

* fix DistGraph.

* fix without shared memory.

* fix sampling.

* enable distributed test.

* fix tests.

* fix a bug in shared-mem heterograph.

* print better error messages.

* fix.

* don't specify formats.

* fix.

* fix

* small fix.

3e2f94ed

28 Jul, 2020 8 commits

[Doc] Introduce the relation of message passing APIs and operators in docstring. (#1878) · 05a43379
Zihao Ye authored Jul 29, 2020
```
* upd

* fix typo

* upd
```
05a43379
[Feature] Support higher order derivative for message passing. (#1877) · 2fa2b453
Zihao Ye authored Jul 28, 2020
```
* upd

* fix typo
```
2fa2b453
[refactor] Move spmm and sddmm operators to operator module (#1873) · 2b8eb5be
Zihao Ye authored Jul 28, 2020
```
* upd

* upd

* upd

* upd
```
2b8eb5be
Revert "[Distributed] DistDataloader (#1870)" (#1876) · 71cf7865
Jinjing Zhou authored Jul 28, 2020
```
This reverts commit 6557291f.
```
71cf7865

[Distributed] DistDataloader (#1870) · 6557291f

Jinjing Zhou authored Jul 28, 2020



* 111

* 111

* fix

* 111

* fix

* 11

* fix

* lint

* Update __init__.py

* lint

* fix

* lint

* fix

* fix

* fix

* fix

* fix

* try fix

* try fix

* fix

* Revert "fix"

This reverts commit a0b954fd4e99b7df92b53db8334dcb583d6e1551.

* fixes.

* fix.

* fix test.

* fix exit.

* fix.

* fix

* fix

* lint

* lint

* lint

* fix

* Update .gitignore
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

6557291f

[Feature] Shared memory utilities (#1807) · 40950629

Qidong Su authored Jul 28, 2020



* update

* update

* update

* update

* fix

* update

* fix

* update

* update

* win32

* update

* fix

* update

* update

* update

* updat

* update

* update

* fix

* update

* update

* update

* update

* update

* fix

* TODO

* 111

* fix

* minor fix

* minor fix

* fox

* Update shared_mem_manager.cc

* update

* update

* update

* update metis

* update metis

* update
Co-authored-by: VoVAllen <jz1749@nyu.edu>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

40950629

hot fix (#1871) · 1c1bb772
xiang song(charlie.song) authored Jul 28, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-68-185.ec2.internal>
```
1c1bb772

[Refactor][Graph] Merge DGLGraph and DGLHeteroGraph (#1862) · 44089c8b

Minjie Wang authored Jul 28, 2020

* Merge

* [Graph][CUDA] Graph on GPU and many refactoring (#1791)

* change edge_ids behavior and C++ impl

* fix unittests; remove utils.Index in edge_id

* pass mx and th tests

* pass tf test

* add aten::Scatter_

* Add nonzero; impl CSRGetDataAndIndices/CSRSliceMatrix

* CSRGetData and CSRGetDataAndIndices passed tests

* CSRSliceMatrix basic tests

* fix bug in empty slice

* CUDA CSRHasDuplicate

* has_node; has_edge_between

* predecessors, successors

* deprecate send/recv; fix send_and_recv

* deprecate send/recv; fix send_and_recv

* in_edges; out_edges; all_edges; apply_edges

* in deg/out deg

* subgraph/edge_subgraph

* adj

* in_subgraph/out_subgraph

* sample neighbors

* set/get_n/e_repr

* wip: working on refactoring all idtypes

* pass ndata/edata tests on gpu

* fix

* stash

* workaround nonzero issue

* stash

* nx conversion

* test_hetero_basics except update rou...

44089c8b

27 Jul, 2020 3 commits
- [Distributed] Small fixes (#1859) · 015acfd2
  Da Zheng authored Jul 27, 2020
```
* fix node/edge_split.

* fix partition.

* support heterograph interface.

* fix test.

* fix

* fix docstring.
```
  015acfd2
- [Distributed] turn off recording on embeddings in the inference. (#1861) · ff8f7082
  Da Zheng authored Jul 27, 2020
```
* turn on/off recording in sparse embedding.

* add test.
```
  ff8f7082
- [Distributed] Small fix on launch script (#1867) · bcb988bd
  Chao Ma authored Jul 27, 2020
```
* update

* update

* update

* update
```
  bcb988bd
26 Jul, 2020 1 commit

[Distributed] update Embedding API (#1847) · 6963d796

Da Zheng authored Jul 26, 2020



* update.

* update Embedding.

* add comments.

* fix lint
Co-authored-by: Chao Ma <mctt90@gmail.com>

6963d796

25 Jul, 2020 1 commit

[Feature] Slice dstnode features in NN modules (#1838) · ec2e24be

Quan (Andy) Gan authored Jul 25, 2020

* slice dstdata from srcdata within nn module

* a bunch of fixes

* add comment

* fix gcmc layer

* repr for blocks

* fix

* fix context

* fix

* do not copy internal columns

* docstring

ec2e24be

24 Jul, 2020 3 commits

update. (#1857) · 0e896a92

Da Zheng authored Jul 24, 2020


Co-authored-by: Ubuntu <ubuntu@ip-172-31-30-164.us-west-2.compute.internal>

0e896a92

[Torch] Fix inter-process communication for PyTorch (#1858) · 53fc6392
Jinjing Zhou authored Jul 24, 2020
```
* fix

* add comment
```
53fc6392

[Distributed] update Metis (#1856) · 62077ef3

Da Zheng authored Jul 23, 2020



* fix bugs.

* improve.

* more updates.

* remove print.

* change the heterograph version.

* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-30-164.us-west-2.compute.internal>

62077ef3

23 Jul, 2020 1 commit
- [RPC] Remove socket->SetTimeOut() (#1851) · b885c82f
  Chao Ma authored Jul 23, 2020
```
* update

* update

* update

* update

* udpate
```
  b885c82f
22 Jul, 2020 4 commits

[Example] Several updates on deepwalk (#1845) · 0fb615b9

Hao Xiong authored Jul 22, 2020



* fix bug

* fix bugs

* add args

* add args

* fix bug

* fix a typo

* results

* results

* results
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

0fb615b9

[HeteroGraph] Metis partition for hetero (#1843) · 33abd275
Jinjing Zhou authored Jul 22, 2020
```
* metis for hetero

* fix partition
```
33abd275

[Distributed] add distributed evaluation. (#1810) · 562871e7

Da Zheng authored Jul 22, 2020



* add eval.

* extend DistTensor.

* fix.

* add barrier.

* add more print.

* add more checks in kvstore.

* fix lint.

* get all neighbors for eval.

* reorganize.

* fix.

* fix.

* fix.

* fix test.

* add reuse_if_exist.

* add test for reuse_if_exist.

* fix lint.

* fix bugs.

* fix.

* print errors of tcp socket.

* support delete tensors.

* fix lint.

* fix

* fix example
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>

562871e7

Deprecate old random walk implementations (#1846) · 9d853977
Quan (Andy) Gan authored Jul 22, 2020

9d853977

21 Jul, 2020 3 commits
- Fix #1826 (#1835) · 41b905da
  xiang song(charlie.song) authored Jul 21, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
  41b905da
- Increase seconds for showing the tcp re-connect message (#1834) · 54b71412
  Chao Ma authored Jul 21, 2020
  
  54b71412
- [Update] d2l link (#1839) · dadceb30
  Anirudh authored Jul 21, 2020
  
  dadceb30
20 Jul, 2020 4 commits

Adding MWE-GCN for ogb/ogbn-proteins (#1803) · 523fa4df

zhengdao-chen authored Jul 20, 2020



* 07132020_cleaned

* Update README.md

* Create README.md

* Update README.md

* Update README.md

* further cleaning

* further cleaning

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-170.us-west-2.compute.internal>
Co-authored-by: Zihao Ye <expye@outlook.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

523fa4df

[RPC] Rpc exit with explicit invocation (#1825) · 5c92f6c2

Chao Ma authored Jul 20, 2020

* exit client

* update

* update

* update

* update

* update

* update

* update

* update test

* update

* update

* update

* update

* update

* update

* update

* update

* update

5c92f6c2

Basic class for dgl datasetyy (#1809) · 64557819
xiang song(charlie.song) authored Jul 20, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
```
64557819

[KVStore] Support delete_data() api on client (#1824) · 65e7805e

Chao Ma authored Jul 20, 2020

* delete tensor

* update

* update

* update

* update

* update

* update

* udpate

* update

* update

* update

65e7805e

18 Jul, 2020 1 commit

[Distributed] Reduce memory consumption in graph partitioning (#1823) · ea420c0a

Da Zheng authored Jul 18, 2020



* save mem.

* save mem.

* reduce mem

* fix test

* fix lint

* fix test

* fix.

* fix.

* fix.

* fix.

* fix lint.

* fix backend operator.

* fix tensorflow operators.

* fix.

* revert change in mxnet operator.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>

ea420c0a

17 Jul, 2020 4 commits
- fix launch. (#1822) · 7645c660
  Da Zheng authored Jul 17, 2020
```
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
```
  7645c660
- [Distributed] Fix partition (#1821) · 20734637
  Da Zheng authored Jul 17, 2020
```
* fix partition and print timing.

* fix lint.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-1.us-west-2.compute.internal>
```
  20734637
- fix (#1817) · df3683a2
  Quan (Andy) Gan authored Jul 17, 2020
  
  df3683a2
- [Example] Update Links for Supervised Community Detection with Graph Neural Networks (#1816) · 63feb47c
  Mufei Li authored Jul 17, 2020
```
* Update README.md

* Update README.txt
```
  63feb47c
16 Jul, 2020 1 commit

[Distributed] Distributed launching script (#1772) · ca9d3216

Chao Ma authored Jul 17, 2020



* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* update

* fix launch script.
Co-authored-by: Da Zheng <zhengda1936@gmail.com>

ca9d3216

15 Jul, 2020 4 commits

[Transfom] Add support for to_bidirected of heterogeneous graphs (#1793) · 0e92dad6

xiang song(charlie.song) authored Jul 15, 2020



* code

* joint_union

* joint union pass all test

* test case for test_transform

* upd

* lint

* lint

* Fix

* list

* Fix

* Fix

* update to_bidirected impl

* Fix

* Fix

* upd

* remove joint_union
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>

0e92dad6

[CI] Update PyTorch in CI image to 1.5.1 (#1808) · 92321347
Jinjing Zhou authored Jul 15, 2020
```
* test

* Revert "test"

This reverts commit be555b06a9942a3267d173f4be760a04d33be227.

* change
```
92321347

[Distributed] add the standalone mode in DistGraph (#1800) · cda0abf7

Da Zheng authored Jul 14, 2020



* add standalone mode

* add comments.

* add tests for sampling.

* fix.

* make the code to run the standalone mode

* fix

* fix

* fix readme.

* fix.

* fix test
Co-authored-by: Chao Ma <mctt90@gmail.com>

cda0abf7

[Transform] New ToSimple API (#1789) · a5722d02

xiang song(charlie.song) authored Jul 15, 2020



* To simple

* lint

* upd

* more test

* fix

* Fix

* Fix

* add share edata

* doc

* Fix

* Fix

* Fix

* Fix

* lint

* lint

* Fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

a5722d02

14 Jul, 2020 1 commit

[Distributed] Run distributed graph server inside DGL (#1801) · a1472bcf

Da Zheng authored Jul 14, 2020

* run dist server in dgl.

* fix bugs.

* fix example.

* check environment variables and fix lint.

* fix lint

a1472bcf