Commits · 37bd092587430540a9b3eae2ee86c75b9a05e614 · OpenDAS / dgl

"git@developer.sourcefind.cn:OpenDAS/dgl.git" did not exist on "364cb7186e94630eb7dc30cd2f494feee1218f8a"

29 Dec, 2022 1 commit

[Sparse] Namespace migration and doc update (#5088) · 37bd0925

Mufei Li authored Dec 29, 2022



* update

* lint

* lint

* comments
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

37bd0925

07 Dec, 2022 2 commits

Add Graph Transformer Layer (Dense Computation) (#4959) · 279e2e8f

Zhiteng Li authored Dec 07, 2022



* Add GraphTransformerLayer (dense)

* beautify the python code with black

* refine according to mufei's comments

* fix AttributeError in unit test

* rename module as GraphormerLayer

* fix name issue
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

279e2e8f

[Doc] Add Labor Sampler documentation (#4986) · 84a12cf6
Muhammed Fatih BALIN authored Dec 06, 2022
```
Co-authored-by: Xin Yao <xiny@nvidia.com>
```
84a12cf6

05 Dec, 2022 1 commit

[NN] Add PathEncoder (#4956) · 93ecfa31

ZhenyuLU_Heliodore authored Dec 05, 2022



* Add PathEncoder to transformer.py

* add blank line at the and

* rename variabl sp to shortest_path

* Fixed corresponding problems

* Fixed certain bugs when running on CUDA

* changed clamp min from 0 to 1
Co-authored-by: Ubuntu <ubuntu@ip-172-31-14-146.ap-northeast-1.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

93ecfa31

01 Dec, 2022 1 commit
- [API Deprecation] Remove candidates in DGLGraph (#4946) · 61139302
  peizhou001 authored Dec 01, 2022
  
  61139302
20 Nov, 2022 1 commit

[NN] Add biased multi-head attention module (dense) (#4916) · 16eba6e8

Zhiteng Li authored Nov 20, 2022



* Add biased multi-head attention module (dense)

* fix lint issues

* refine according to dongyu's comments
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

16eba6e8

18 Nov, 2022 1 commit

[Model] Add `dgl.nn.CuGraphRelGraphConv` model (#4826) · 4ecd2c85

Tingyu Wang authored Nov 18, 2022



* added relgraphconv

* add tests for CuGraphRelGraphConv

* move test to tests directory

* update docs

* address PR review 1

* address PR review, continued

* remove stashing ctx.device

* make fanout optional

* fanout -> max_in_degree

* improve docstrings consistency

* initialize parameters directly in __init__

* get rid of shared memory size check

* improve docs

* format comments

* skip test case for regularizer=None
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Hongzhi (Steve), Chen <chenhongzhi.nkcs@gmail.com>

4ecd2c85

16 Nov, 2022 1 commit

[Transform] Add ToLevi transform (#4884) · c235d17d

Zhiteng Li authored Nov 16, 2022



* add ToLevi transform

* fix parameter typo

* fix lint issues

* fix device issue

* refine according to dongyu's comments
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

c235d17d

15 Nov, 2022 1 commit
- Deprecate (#4864) · 3132da28
  peizhou001 authored Nov 15, 2022
```
rename DGLHeteroGraph to DGLGraph
```
  3132da28
06 Nov, 2022 1 commit

[Transform] Add shortest distance (#4799) · 1d229194

rudongyu authored Nov 06, 2022

* shortest dist

* update

* address issues

* update

* fix indent

* lint

* fix indent

1d229194

02 Nov, 2022 1 commit

[NN] Add DegreeEncoder for graph transformer (#4742) · 9d9280cb

ZhenyuLU_Heliodore authored Nov 02, 2022



* Add files via upload

This file will contain several utility modules for Graph Transformer. DegreeEncoder has been implemented in this file now.

* Update graph_transformer.py

* Update nn-pytorch.rst

Add graph_transformer.DegreeEncoder in Utility Modules

* Update test_nn.py

* Update __init__.py

* Update graph_transformer.py

* Update test_nn.py

* Update graph_transformer.py

fix unused import

* Update graph_transformer.py

add module doc-string

* Update graph_transformer.py

* Update graph_transformer.py
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

9d9280cb

01 Nov, 2022 1 commit

[Dist] Enable save and load for Distributed Optimizer (#4752) · 2caa6bd0

peizhou001 authored Nov 01, 2022



* add save/load for distributed  optimizer
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-19.ap-northeast-1.compute.internal>

2caa6bd0

31 Oct, 2022 1 commit

[NN] Add a learned laplacian positional encoder (#4750) · ed66a209

Zhiteng Li authored Oct 31, 2022



* add a learned laplacian positional encoder

* leverage black to beautify the python code

* refine according to dongyu's comments
Co-authored-by: rudongyu <ru_dongyu@outlook.com>

ed66a209

27 Oct, 2022 1 commit

[Model] Heterogeneous graph support for GNNExplainer (#4401) · 4b1fb681

Infinity_X authored Oct 27, 2022



* [Model] Heterogeneous graph support for GNNExplainer (#1)

* add HeteroGNNExplainer

* GNNExplainer for heterogeenous graph

* fix typo

* variable name cleanup

* added HeteroGNNExplainer test

* added doc indexing for HeteroGNNExplainer

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update python/dgl/nn/pytorch/explain/gnnexplainer.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* Update gnnexplainer.py

Change DGLHeteroGraph to DGLGraph, and specified parameter inputs

* Added ntype parameter to the explainer_node call

* responding to @mufeili's comment regarding restoring empty lines at appriopiate places to be consistent with existing practices

* responding to @mufeili's comment regarding restoring empty lines at appriopiate places that were missed in the last commit

* docstring comments added based on @mufeili suggestions

* indorporated @mufeili requested changes related to docstring model declaration.

* example model and test_nn.py added for explain_graphs

* explain_nodes fixed and fixed the way hetero num nodes and edges are handled

* white spaces removed

* lint issues fixed

* explain_graph model updated

* explain nodes model updated

* minor fixes related to gpu compatability

* cuda support added

* simplify WIP

* _init_masks for ennexplainer updated to match heterographs

* Update

* model simplified and docstring comments updated

* nits: docstring udpated

* lint check issues updated

* lint check updated

* soem formatting updated

* disabling int32 testing for GNNExplainer

* Update
Co-authored-by: Kangkook Jee <kangkook.jee@gmail.com>
Co-authored-by: ahadjawaid <94938815+ahadjawaid@users.noreply.github.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: kxm180046 <kxm180046@utdallas.edu>
Co-authored-by: Kunal Mukherjee <kunmukh@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-36-188.ap-northeast-1.compute.internal>

4b1fb681

12 Oct, 2022 1 commit

Add Metapath2vec module (#4660) · f846d902

LuckyLiuM authored Oct 13, 2022



* metapath2vec package

* fix bugs --metapath2vec package

* add unittest and fix bugs

* fix pyling messages

* del init.py

* fix bugs

* modify metapath2vec and add deepwalk

* metapath2vec module

* Update

* Update

* rollback to initial metapath2vec

* Update

* Update

* Update

* Update
Co-authored-by: Rhett Ying <85214957+Rhett-Ying@users.noreply.github.com>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal>

f846d902

10 Oct, 2022 1 commit

[Transform] Double Radius Node Labeling (#4513) · 303b150f

rudongyu authored Oct 10, 2022

* add double radius node labeling

* add doc

* add test

* fix lint issue

* update

* update

* update

* update

* fix lint

303b150f

30 Sep, 2022 1 commit

[Sparse] Improve API docs (#4663) · 09ec5fd5

Israt Nisa authored Sep 30, 2022



* replace with pow

* autosummary for attributes

* revert accidental push

* revert accidental push

* added example
Co-authored-by: Israt Nisa <nisisrat@amazon.com>

09ec5fd5

29 Sep, 2022 1 commit

Add Deepwalk module (#4562) · eb729c54

LuckyLiuM authored Sep 29, 2022



* metapath2vec package

* fix bugs --metapath2vec package

* add unittest and fix bugs

* fix pyling messages

* del init.py

* fix bugs

* modify metapath2vec and add deepwalk

* deepwalk module

* del metapath2vec files

* Update

* Update

* Update

* Update

* Update

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

eb729c54

28 Sep, 2022 1 commit

Add `sddmm` operator in mock_sparse library (#4579) · fa05ccb9

Israt Nisa authored Sep 28, 2022



* sddmm init

* SDDMM with N-D nonzero values

* drop support for vector shaped non zero elements

* address comments

* skip cpu test

* skip GPU test too
Co-authored-by: Israt Nisa <nisisrat@amazon.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

fa05ccb9

27 Sep, 2022 1 commit

[Sparse] Migration of Unary, Softmax, Matmul Ops (#4616) · 977b1ba4

Mufei Li authored Sep 27, 2022



* Update

* lint

* Fix

* Update

* Update

* Update

* update

* Fix

* Update

* Fix

* Fix

* Fix

* CI

* Update

* Update

* Update

* update test
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal>

977b1ba4

26 Sep, 2022 1 commit

[Sparse] Add reduction operators (#4600) · 544a2cd1

czkkkkkk authored Sep 26, 2022

* [Sparse] Add reduction operators

* Fix linting problem

* Fix linting problem

* Fix linting problem

* Fix docstring

* Fix test cases

* Fix linting problem

* Skip reduction unittests

544a2cd1

23 Sep, 2022 1 commit

[Sparse] Add Transposition for SparseMatrix and DiagMatrix (#4597) · db64cc37

czkkkkkk authored Sep 23, 2022



* [Sparse] Add Transposition

* Fix docstring

* Fix linting problem

* Minor fix

* Minor fix
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

db64cc37

20 Sep, 2022 1 commit

[Sparse] Migrate DiagMatrix class (#4567) · 73b9f3a1

Mufei Li authored Sep 20, 2022



* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update
Co-authored-by: Ubuntu <ubuntu@ip-172-31-9-26.ap-northeast-1.compute.internal>

73b9f3a1

14 Sep, 2022 1 commit

Move mock version of dgl_sparse library to DGL main repo (#4524) · cf035927

Israt Nisa authored Sep 14, 2022



* init

* Add api doc for sparse library

* support op btwn matrices with differnt sparsity

* Fixed docstring

* addresses comments

* lint check

* change keyword format to fmt
Co-authored-by: Israt Nisa <nisisrat@amazon.com>

cf035927

05 Sep, 2022 1 commit

[Bug] Enable turn on/off libxsmm at runtime (#4455) · 62af41c2

peizhou001 authored Sep 05, 2022



* enable turn on/off libxsmm at runtime by adding a global config and related API
Co-authored-by: Ubuntu <ubuntu@ip-172-31-19-194.ap-northeast-1.compute.internal>

62af41c2

17 Aug, 2022 1 commit

[Doc] Update distributed chapter according to new pipeline (#4275) · 3bcb268a

Minjie Wang authored Aug 17, 2022

* dist index chapter

* preproc chapter

* rst

* tools page

* partition chapter

* rst

* hetero chapter

* 7.1 step1

* add parmetis back

* changed based on feedback

* address comments

3bcb268a

16 Aug, 2022 1 commit

[Feature] enable graph partition book support canonical etypes (#4343) · 39987bc5

Rhett Ying authored Aug 16, 2022

* [Feature] enable graph partition book support canonical etypes

* fix lint

* fix lint

* add todo

* refine according to review comments

* fix lint

* refine naming

* revert PartitionPolicy __init__

* refine docstring

* fix doc string

39987bc5

07 Jul, 2022 1 commit

[Feature] Add to_cugraph and from_cugraph to DGL (#4166) · 9ae117d3

Vibhu Jawa authored Jul 06, 2022



* Added to_cugraph and from_cugraph functionality

* fix from_cugraph example

* Addressed Reviews

* Fix linting

* Apply suggestions to docstrings from code review
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>

* Add API docs and remove `from_cugraph` alias

* move cugraph tests to  tests/cugraph/test_basics.py

* remove ununsed imports from test_basics.py

* remove pytest.importorskip as no longer needed
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

9ae117d3

20 Jun, 2022 1 commit

[Dist] defer to load node/edge feats (#4143) · 69226588

Rhett Ying authored Jun 20, 2022



* [Dist] defer to load node/edge feats

* fix lint

* Update python/dgl/distributed/partition.py
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>

* Update python/dgl/distributed/partition.py
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>

* fix lint
Co-authored-by: Minjie Wang <minjie.wang@nyu.edu>

69226588

15 Jun, 2022 1 commit

[Doc] Updated transform ops list in dgl.rst (Issue #4087) (#4123) · 5f04fc2b

ndickson-nvidia authored Jun 15, 2022



* * Added functions from dgl.transforms.functional that were missing from the list for documentation in dgl.rst

* * Sorted transform ops list in dgl.rst in alphabetical order
Co-authored-by: Xin Yao <xiny@nvidia.com>

5f04fc2b

14 Jun, 2022 1 commit

[Dataset] Add Flickr and Yelp dataset (#4099) · defa292b

RecLusIve-F authored Jun 14, 2022



* Add Flickr and Yelp dataset

* Update flickr.py

* update

* Update yelp.py

* Update yelp.py

* update

* Update yelp.py

* Update test_data.py

* Update yelp.py

* update

* Update test_data.py

* Update yelp.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

defa292b

02 Jun, 2022 2 commits

[Dataset] Add WikiCS Dataset (#4035) · 89655cfd

RecLusIve-F authored Jun 02, 2022



* Fix bugs & Update dataset

* Update

* Update wikics.py

* Update wikics.py

* Update test_data.py

* Update wikics.py

* Update wikics.py

* Update wikics.py

* update

* Update module.py

* Update dgl.data.rst

* Update wikics.py

* Update wikics.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

89655cfd

[Data] AsGraphPredDataset (#4073) · d9c25521
Mufei Li authored Jun 02, 2022
```
* Update

* CI

* Update

* Update

* Fix

* Fix
```
d9c25521

27 May, 2022 1 commit
- [Bugfix] Fix PinSAGE Benchmark (#4058) · bef99307
  Mufei Li authored May 28, 2022
```
* Update

* Update

* Update dgl.data.rst

* CI
```
  bef99307
20 May, 2022 1 commit

[NN] Label Propagation & Directional Graph Networks (#4017) · 3fe5eea7

rudongyu authored May 20, 2022



* add label propagation module

* fix prev bug in example

* add dgn

* fix linting and doc issues

* update label propagation & dgn

* update label propagation & dgn

* update example

* fix unit test

* fix agg heritage issue

* fix agg issue

* fix lint

* fix idx

* fix lp gpu issue

* Update

* Update
Co-authored-by: mufeili <mufeili1996@gmail.com>

3fe5eea7

16 May, 2022 1 commit

[Dataset & Transform] Synthetic Datasets for Explainability and SIGNDiffusion Transform (#3982) · 65b0b9e8

Mufei Li authored May 16, 2022

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

65b0b9e8

07 May, 2022 1 commit

[Transform] Add FeatMask and RowFeatNormalizer transforms (#3968) · b2ec5a2e

RecLusIve-F authored May 07, 2022



* [Model]P-GNN

* updata

* [Example]P-GNN

* Update README.md

* Add NodeFeatureMasking and NormalizeFeatures

* Update

* Update transforms.rst

* Update

* Update

* Update

* Update test_transform.py

* Update

* Update

* Update test_transform.py

* Update module.py

* Update module.py

* Update module.py
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

b2ec5a2e

25 Apr, 2022 1 commit

[NN] GINEConv (#3934) · 248bece6

Mufei Li authored Apr 25, 2022



* Update

* Update

* Update

* Update
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

248bece6

15 Apr, 2022 1 commit
- [Doc] Fix documentation in dgl.multiprocessing namespace (#3929) · 4375c2d7
  Quan (Andy) Gan authored Apr 16, 2022
```
* fix docs

* remove

* oh

* fix
```
  4375c2d7
12 Apr, 2022 1 commit

[Feature] Enable UVA sampling with CPU indices (#3892) · e06e63d5

Quan (Andy) Gan authored Apr 12, 2022

* enable UVA sampling with CPU indices

* add docs

* add more docs

* lint

* fix

* fix

* better error message

* use mp.Barrier instead of queues

* revert

* revert

* oops

* revert dgl.multiprocessing.spawn

* Update pytorch.py

e06e63d5