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* add edge weight in forward

* fix lint

* fix

* fix

* address comments

* add utils

* add util to normalize in gcn way

* fix lint

* add unittest

* fix lint

* fix docstring

* fix docstring

* address comments

* improve notation consistence

* use preferred fn

* move edge_softmax to functional

* change examples

* fixes

* revert

* fix

* fix

* remove

* fix

* test

* add init
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* first commit

* more commit

* fix and docstring

* add to api reference

* address comments

* Update convert.py

* [Model] MixHop for Node Classification task

* [docs] update

* [docs] update

* [fix] remove seed option

* [fix] update readme

* [feature] support qm9 dataset

* [style] update

* [docs] fix the details

* [fix] indexing only support int

* [style] update

* [fix] multiple backends support

* [docs] add qm9

* [fix] Z type: float32 -> int32

* [fix] Z type: int32 -> long

* [docs] add ref

* [docs] fix

* [docs] update

* [docs] update

* [fix] test eval

* [docs] fix example
Co-authored-by: xnuohz@126.com <ubuntu@ip-172-31-44-184.us-east-2.compute.internal>
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* new tutorials for small graphs

* address changes and use GraphDataLoader

* fix and add data

* fix load_data

* style fixes

* Update 5_graph_classification.py

* add graph dataloader

* add to doc

* fix

* fix

* fix docstring

* update according to torch default_collate

* add unittest

* fix

* fix lint

* fix

* wip

* udp

* upd

* fix typo

* lint

* lint

* upd

* upd

* lint

* lint

* upd

* upd

* tftest

* fix

* fallback numpy

* fix tf

* docstring
Co-authored-by: Mufei Li <mufeili1996@gmail.com>

* upd

* fix-link

* lint

* Update

* Update

* Update

* Disable copying for anywhere but the GPU

* Remove unused import and remove references to transferring from the GPU from the docs

* Skip gpu test in cpu mode
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

* Update docs

* Make non-default streams non-blocking

* Add async transferer class

* Add async ndarray copy interface

* Add python bindings

* Fix comment

* Add python class

* Fix linting issues

* Add python unit test

* Update python interface

* move async_transferer to cuda only directory

* Fix linting issue

* Move out of contrib

* Add doc strings

* Move test compute from backend

* Update comment

* Fix test naming

* Fix argument usage

* Wrap/unwrap backend parameters

* Move to dataloading

* Move to 'dataloading'

* Make GPU/CPU compatible

* Fix unit tests

* Add docs

* Use only backend interface for datamovement in unit test

* Update Doc for UDFs

* add degree bucketing explanation

* Update udf.rst

* Update
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update dgl.DGLGraph.rst

* Update gcn.py

* fix user guide link

* some fix on tensorflow

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* move image to s3 server.

* fix links and ref

* WIP: api

* dgl.sampling, dgl.data

* dgl.sampling; dgl.dataloading

* sampling packages

* convert

* subgraph

* deprecate

* subgraph APIs

* All docstrings for convert/subgraph/transform

* almost all funcs under dgl namespace

* WIP: DGLGraph

* done graph query

* message passing functions

* lint

* fix merge error

* fix test

* lint

* fix
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* quick fix.

* update sparse optimizer.

* fix.

* fix

* add doc.

* update DistGraph.

* add DistTensor.

* update DistEmbedding.

* add partition.py

* add sampling.

* fix.

* add graph partition book and create a base class.

* fix test.

* add rst.

* update doc rst.

* update.

* fix.

* fix docs

* update distributed tensor and embeddings.

* add checks.

* update DistGraph.

* update initialization.

* fix graph partition book.

* update graph partition book.

* update partition.

* update partition.

* fix.

* add example code.

* update DistGraph

* Update python/dgl/distributed/dist_context.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_context.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* Update python/dgl/distributed/dist_dataloader.py
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>

* update initialize.

* update dataloader.

* update distgraph.

* update DistGraph.

* update DistTensor.

* update.

* more updates.

* fix lint.

* add num_nodes and num_edges
Co-authored-by: Chao Ma <mctt90@gmail.com>
Co-authored-by: Quan (Andy) Gan <coin2028@hotmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* fix mxnet nn doc and no note on chebconv

* change notes to note to highlight

* Update graph

* Fix for dgl.graph

* from_scipy

* Replace canonical_etypes with relations

* from_networkx

* Update for hetero_from_relations

* Roll back the change of canonical_etypes to relations

* heterograph

* bipartite

* Update doc

* Fix lint

* Fix lint

* Fix test cases

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix test

* Fix

* Update

* Use DGLError

* Update

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Fix

* Update

* Update

* Update

* Update

* Update

* Update

* rewrite sanity checks

* delete unnecessary checks

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Fix

* Update

* Update

* Update

* Fix

* Fix

* Fix

* Update

* Fix

* Update

* Fix

* Fix

* Update

* Fix

* Update

* Fix
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Quan Gan <coin2028@hotmail.com>

* add chebconv

* fix

* lint

* fix lint

* docs

* [Doc] User guide section 5 and 6

* oops

* fix

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* modify the link of save_graphs and load_graphs in dataset user guide

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* data pipeline user guide

* remove chapter numbers

* Update data.rst

* image in dataset userguide

* update links using ref

* update knn graph docs

* more docs

* [Doc] transform module docstrings

* remove copy_ndata and copy_edata

* fix

* lint

* fix

* fix

* fix

* clean up docstrings

* fix docstring

* dtype specifications

* addresses comments

* fix
Co-authored-by: Mufei Li <mufeili1996@gmail.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* go through gcn, relgcn

* fix tagconv formula

* fix doc in sageconv

* fix sgconv doc

* replace hat with tilde

* more comments on gmmconv

* fix agnnconv chebconv doc

* modify nnconv doc

* remove &

* add nn conv examples

* Rebase master

* More merge conflicts

* check homo

* add back self loop for some convs, check homo in tranform

* add example for denseconv

* add example and doc for dotgat and cfconv

* check in-degree for graphconv

* add language fix

* gconv address all comments

* another round of change based on api template

* change agnn

* go through agnn, appnp, atomic, cf, cheb, dense, gat, sage modules

* finish pytorch part of nn conv

* mxnet graphconv done

* tensorflow graphconv works

* add new modules into doc

* add comments to not split code

* refine doc

* resr

* more comments

* more fix

* finish conv and dense conv part api

* pylint fix

* fix pylink

* fix pylint

* more fix

* fix

* fix test fail because zere in degree

* fix test fail

* sage is not update for mxnet tf
Co-authored-by: Ubuntu <ubuntu@ip-172-31-0-81.us-east-2.compute.internal>

* clean commit

* oops forgot the most important files

* use einsum

* copy feature from frontier to block

* Revert "copy feature from frontier to block"

This reverts commit 5224ec963eb6a3ef1b6ab74d8ecbd44e4e42f285.

* temp fix

* unit test

* fix

* revert jtnn

* lint

* fix win64

* docstring fixes and doc indexing

* revert einsum in sparse bidecoder

* fix some examples

* lint

* fix due to some tediousness in remove_edges

* addresses comments

* fix

* more jtnn fixes

* fix

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* upd

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* update doc

* Update data.rst
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>

* PPIDataset

* Revert "PPIDataset"

This reverts commit 264bd0c960cfa698a7bb946dad132bf52c2d0c8a.

* update data rst

* update data doc and docstring

* API doc rst for dataset

* docstring

* update api doc

* add url format

* update docstring

* update citation graph

* update knowledge graph

* update gc datasets

* fix index

* Rst fix (#3)

* Fix syntax

* syntax

* update docstring

* update doc (#4)

* final update

* fix rdflib

* fix rdf
Co-authored-by: HuXiangkun <huxk_hit@qq.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: xiang song(charlie.song) <classicxsong@gmail.com>