Commits · 338f24cfbcfbcceb0f73894a07a8e35fdb3c624d · OpenDAS / dgl

16 Apr, 2020 1 commit

Chao Ma authored Apr 16, 2020

* update

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* fix lint

338f24cf

15 Apr, 2020 1 commit
- Update (#1447) · ad222fb9
  Mufei Li authored Apr 16, 2020
  
  ad222fb9
14 Apr, 2020 1 commit

[DGL-LifeSci] Weave for Molecular Property Prediction (#1441) · 011656fd

jjhu94 authored Apr 15, 2020



* featurize for weave model

* weave module for molecular graphs

* Update

* completed weave model

* update the whole weave model

* Update

* update atom (node) features

'

* "featurizer"

* Add files via upload

add edge featurizer

* Add files via upload

* Update

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* Update
Co-authored-by: mufeili <mufeili1996@gmail.com>

011656fd

13 Apr, 2020 1 commit

[Example] GCMC with sampling (#1296) · 28117cd9

xiang song(charlie.song) authored Apr 13, 2020



* gcmc example

* Update Readme

* Add multiprocess support

* Fix

* Multigpu + dataloader

* Delete some dead code

* Delete more

* upd

* Add README

* upd

* Upd

* combine full batch and sample GCMCLayer, use HeteroCov

* Fix

* Update Readme

* udp

* Fix typo

* Add cpu run

* some fix and docstring
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Ubuntu <ubuntu@ip-172-31-63-71.ec2.internal>

28117cd9

09 Apr, 2020 5 commits
- [Bug] Fix khop graph (#1433) · bd1e48a5
  Mufei Li authored Apr 10, 2020
```
* Update

* Update

* Update
```
  bd1e48a5
- [Example] Update README of transformers for multi-gpu support (#1435) · 88c34487
  Mufei Li authored Apr 09, 2020
```
* Update README.md

* Update README.md
```
  88c34487
- deprecate DGL-KE. (#1432) · e317f715
  Da Zheng authored Apr 09, 2020
```
* deprecate DGL-KE.

* Update README.md

* remove from CI.

* remove tests.
Co-authored-by: Zheng <dzzhen@3c22fb0ed81b.ant.amazon.com>
```
  e317f715
- [Docs] Fix typos in env vars docs (#1429) · 8d20c249
  Adam J. Stewart authored Apr 08, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  8d20c249
- [Doc] Fix GraphConv math notation (#1430) · aefc080e
  Adam J. Stewart authored Apr 08, 2020
  
  aefc080e
08 Apr, 2020 1 commit

[Regression] Fix regression test (#1426) · 1b37545d

Jinjing Zhou authored Apr 08, 2020

* fix

* fix

* fix

* fix

* fix

* 111

* fix

* fix

* fix

* test

* ff

* fix

* ff

* fix

* f

* merge

* fix

1b37545d

06 Apr, 2020 2 commits
- backend selection (#1424) · 43d9f43a
  Quan (Andy) Gan authored Apr 06, 2020
  
  43d9f43a
- fix #1421 (#1422) · 91f7ff8e
  Quan (Andy) Gan authored Apr 06, 2020
  
  91f7ff8e
05 Apr, 2020 1 commit

[Feature] Simplify shared memory graph index (#1381) · 7c47d8c9

Da Zheng authored Apr 05, 2020



* simplify shared memory graph index.

* fix.

* remove edge_dir in SharedMemGraphStore.

* avoid creating shared-mem graph store with from_csr.

* simplify from_csr.

* add comments.

* fix lint.

* remove the test.

* fix compilation error.

* fix a bug.

* fix a bug.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal>

7c47d8c9

03 Apr, 2020 2 commits
- [Doc & Tutorial] Fix dgl.batch and GAT (#1418) · 1b152bf5
  Mufei Li authored Apr 04, 2020
```
* Update doc and tutorials

* Fix
```
  1b152bf5
- [BUG] Fix #1409 (#1411) · 24dc71fc
  Quan (Andy) Gan authored Apr 03, 2020
```
* [BUG] Fix #1409

* fix test
```
  24dc71fc
02 Apr, 2020 4 commits
- [DGL-LifeSci] Documentation (#1414) · d3560b71
  Mufei Li authored Apr 02, 2020
```
* Update

* Update

* Update
```
  d3560b71
- [Docs] Fix doc build doesn't work for nn.tensorflow and nn.mxnet (#1413) · 7e0893e6
  Jinjing Zhou authored Apr 02, 2020
```
* fix

* lint

* fix
```
  7e0893e6
- [README] New stuffs from 0.4.3 (#1412) · 31a636a1
  Minjie Wang authored Apr 02, 2020
  
  31a636a1
- [DGL-LifeSci] Final release preparation for 0.2.1 · 0ee9f56e
  Mufei Li authored Apr 02, 2020
  
  0ee9f56e
01 Apr, 2020 2 commits

Update README.md · 00efec60
Minjie Wang authored Apr 01, 2020

00efec60

[DGL-LifeSci] Release Preparation (CI, Docker, Conda build) (#1399) · b76ac11c

Mufei Li authored Apr 01, 2020



* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* Update

* add docs

* Fix style

* Fix lint

* Bug fix

* Fix test

* Update

* Update

* Update

* Update
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

b76ac11c

30 Mar, 2020 5 commits
- [Windows] fix compilation issues on vs2015 (#1405) · e4cc8185
  Quan (Andy) Gan authored Mar 30, 2020
```
* [Windows] fix compilation issues on vs2015

* fix test
```
  e4cc8185
- [TF] TF backend fix and new logic to choose backend (#1393) · e9440acb
  Jinjing Zhou authored Mar 30, 2020
```
* TF backend fix and new logic to choose backend

* fix

* fix

* fix

* fix

* fix backend

* fix

* dlpack alignment

* add flag

* flag

* lint

* lint

* remove unused

* several fixes
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  e9440acb
- [Sampler] Change argument type of fanout from list to dict (#1403) · 4b4186f8
  Quan (Andy) Gan authored Mar 30, 2020
  
  4b4186f8
- [BUG] fix crash in neighbor sampling w/ replacement on 0 degree nodes (#1402) · 97b08fbb
  Quan (Andy) Gan authored Mar 30, 2020
  
  97b08fbb
- add an optional include_dst_in_src argument (#1401) · e3a9a6bb
  Quan (Andy) Gan authored Mar 30, 2020
  
  e3a9a6bb
29 Mar, 2020 1 commit

[Feature] Support nn modules for bipartite graphs. (#1392) · af61e2fb

Zihao Ye authored Mar 29, 2020



* init gat

* fix

* gin

* 7 nn modules

* rename & lint

* upd

* upd

* fix lint

* upd test

* upd

* lint

* shape check

* upd

* lint

* address comments

* update tensorflow
Co-authored-by: Quan Gan <coin2028@hotmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

af61e2fb

28 Mar, 2020 1 commit

[Feature] Deprecate multigraph (#1389) · 67cb7a43

xiang song(charlie.song) authored Mar 28, 2020



* Deprecate multi-graph

* Handle heterograph and edge_ids

* lint

* Fix

* Remove multigraph in C++ end

* Fix lint

* Add some test and fix something

* Fix

* Fix

* upd

* Fix some test case

* Fix

* Fix
Co-authored-by: Ubuntu <ubuntu@ip-172-31-51-214.ec2.internal>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>

67cb7a43

27 Mar, 2020 2 commits

[NN] Add HeteroGraphConv module for cleaner module definition (#1385) · 3efb5d8e

Minjie Wang authored Mar 27, 2020

* Add HeteroGraphConv

* add custom aggregator; some docstring

* debugging

* rm print

* fix some acc bugs

* fix initialization problem in weight basis

* passed tests

* lint

* fix graphconv flag; add error message

* add mxnet heteroconv

* more fix for mx

* lint

* fix torch cuda test

* fix mx test_nn

* add exhaust test for graphconv

* add tf heteroconv

* fix comment

3efb5d8e

[Feature] Casting between DGLGraph and DGLHeteroGraph (#1391) · bbfff8ce

Quan (Andy) Gan authored Mar 27, 2020



* [Feature] Casting between DGLGraph and DGLHeteroGraph

* lint

* address comments
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
Co-authored-by: Jinjing Zhou <VoVAllen@users.noreply.github.com>

bbfff8ce

26 Mar, 2020 1 commit
- [CI] Tensorflow ci (#1397) · ebda932d
  Jinjing Zhou authored Mar 27, 2020
```
* fix

* fix
```
  ebda932d
25 Mar, 2020 2 commits
- [MXNet] Patch mxnet unittest (#1395) · 1e27e90e
  Jinjing Zhou authored Mar 26, 2020
```
* patch

* turn off tf test

* skip test

* fix
```
  1e27e90e
- [Doc] Fix link to backends docs (#1376) · 08fcda32
  Adam J. Stewart authored Mar 25, 2020
```
Co-authored-by: Tong He <hetong007@gmail.com>
```
  08fcda32
23 Mar, 2020 1 commit
- [BUG] Another fix on remove edges when all edges are removed (#1386) · b9c65e91
  Quan (Andy) Gan authored Mar 23, 2020
```
* [BUG] Another fix on remove edges when all edges are removed

* fix mxnet
```
  b9c65e91
22 Mar, 2020 5 commits

[BUG] Fix remove_edges crashing with empty edge ID tensors (#1384) · d27b4859
Quan (Andy) Gan authored Mar 22, 2020

d27b4859

[BUGFIX] don’t import dgl in the package. (#1382) · a0721405

Da Zheng authored Mar 22, 2020



* fix dgl data.

* remove more.

* fix.

* fix.
Co-authored-by: Ubuntu <ubuntu@ip-172-31-16-150.us-west-2.compute.internal>

a0721405

[BUGFIX] Fix is_multigraph in the construction from scipy coo matrix (#1357) · 10253a5c

Da Zheng authored Mar 22, 2020

* fix is_multigraph in from_coo.

* add tests for partition.

* fix.

* Revert "add tests for partition."

This reverts commit cb8c8555da3e0c70a482c2d639adce2943475bfc.

* fix everywhere from_scipy_sparse_matrix is used.

10253a5c

Update README · 856de790
Minjie Wang authored Mar 22, 2020
```
Update README with both latest and stable doc links
```
856de790

[Doc] Patch tutorial (#1380) · 2cdc4d3c

Minjie Wang authored Mar 22, 2020

* patched 1_first

* done 2_basics

* done 4_batch

* done 1_gcn, 9_gat, 2_capsule

* 4_rgcn.py

* revert

* more fix

2cdc4d3c

20 Mar, 2020 1 commit
- [Hetero] Replace card with num_nodes · 0f40c6e4
  Mufei Li authored Mar 20, 2020
```
Co-authored-by: Minjie Wang <wmjlyjemaine@gmail.com>
```
  0f40c6e4